Wall clock time and date at job start Tue Mar 31 2020 22:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47104 * 2 1 4 4 N 1.46501 * 109.47035 * 240.00340 * 2 1 3 5 5 C 1.36934 * 120.00242 * 85.00038 * 4 2 1 6 6 H 1.07998 * 119.99995 * 359.97438 * 5 4 2 7 7 C 1.38808 * 120.00184 * 179.97438 * 5 4 2 8 8 N 1.31620 * 120.00303 * 179.97438 * 7 5 4 9 9 Si 1.86806 * 120.00033 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47055 * 89.99800 * 9 7 5 11 11 H 1.48501 * 109.47037 * 210.00251 * 9 7 5 12 12 H 1.48499 * 109.46953 * 329.99943 * 9 7 5 13 13 C 1.53004 * 109.47213 * 120.00340 * 2 1 3 14 14 H 1.08994 * 110.91472 * 63.89720 * 13 2 1 15 15 C 1.55154 * 111.00307 * 187.80320 * 13 2 1 16 16 C 1.54334 * 103.01682 * 153.38090 * 15 13 2 17 17 N 1.47022 * 107.26985 * 338.13705 * 16 15 13 18 18 C 1.34777 * 125.65295 * 178.85016 * 17 16 15 19 19 O 1.21271 * 120.00156 * 179.69649 * 18 17 16 20 20 C 1.50699 * 119.99480 * 359.69407 * 18 17 16 21 21 N 1.46506 * 109.46870 * 180.02562 * 20 18 17 22 22 C 1.34760 * 124.17763 * 89.97685 * 21 20 18 23 23 O 1.21238 * 127.16227 * 359.97438 * 22 21 20 24 24 C 1.51582 * 105.68688 * 180.02562 * 22 21 20 25 25 N 1.47316 * 103.59163 * 359.97438 * 24 22 21 26 26 C 1.46496 * 126.68902 * 179.73523 * 25 24 22 27 27 C 1.33794 * 124.17371 * 270.00027 * 21 20 18 28 28 O 1.21530 * 123.77462 * 359.95498 * 27 21 20 29 29 C 1.47421 * 108.69994 * 358.58716 * 17 16 15 30 30 H 1.09001 * 109.47598 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47242 * 299.99397 * 1 2 3 32 32 H 1.08999 * 109.47331 * 59.99956 * 1 2 3 33 33 H 0.97000 * 119.99974 * 265.00011 * 4 2 1 34 34 H 0.96995 * 120.00287 * 180.02562 * 8 7 5 35 35 H 1.09003 * 110.72036 * 271.93660 * 15 13 2 36 36 H 1.09002 * 110.71991 * 35.03870 * 15 13 2 37 37 H 1.09002 * 109.99008 * 218.66591 * 16 15 13 38 38 H 1.08998 * 109.78111 * 97.49773 * 16 15 13 39 39 H 1.09000 * 109.47691 * 60.00231 * 20 18 17 40 40 H 1.09005 * 109.47651 * 299.99921 * 20 18 17 41 41 H 1.09003 * 110.60206 * 241.47241 * 24 22 21 42 42 H 1.09001 * 110.60352 * 118.52154 * 24 22 21 43 43 H 1.09007 * 109.47197 * 90.00456 * 26 25 24 44 44 H 1.09005 * 109.47321 * 209.99489 * 26 25 24 45 45 H 1.08996 * 109.47367 * 330.00231 * 26 25 24 46 46 H 1.09005 * 110.36992 * 143.18679 * 29 17 16 47 47 H 1.08998 * 110.37077 * 265.51373 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1491 -0.0074 -2.3758 6 1 1.8918 1.0404 -2.4243 7 6 2.6122 -0.6616 -3.5090 8 7 2.7375 -0.0051 -4.6429 9 14 3.0565 -2.4741 -3.4253 10 1 1.8594 -3.2924 -3.7452 11 1 4.1324 -2.7659 -4.4064 12 1 3.5309 -2.8047 -2.0575 13 6 2.0400 -0.7213 1.2492 14 1 1.7473 -1.7712 1.2390 15 6 3.5783 -0.5740 1.3873 16 6 3.8050 -0.7061 2.9082 17 7 2.5331 -0.3789 3.5691 18 6 2.3105 -0.3991 4.8982 19 8 1.2182 -0.1040 5.3346 20 6 3.4190 -0.7885 5.8419 21 7 2.9281 -0.7332 7.2212 22 6 2.3584 -1.7714 7.8642 23 8 2.1623 -2.8852 7.4271 24 6 2.0123 -1.2569 9.2474 25 7 2.4709 0.1428 9.2208 26 6 2.3741 1.1164 10.3111 27 6 2.9896 0.3546 7.9977 28 8 3.4621 1.4152 7.6387 29 6 1.5434 -0.0190 2.5376 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 2.2489 -1.6317 -1.1527 34 1 3.0608 -0.4623 -5.4349 35 1 4.0919 -1.3699 0.8480 36 1 3.9055 0.4036 1.0331 37 1 4.5801 -0.0110 3.2312 38 1 4.0965 -1.7281 3.1503 39 1 4.2547 -0.0985 5.7254 40 1 3.7503 -1.8019 5.6150 41 1 2.5475 -1.8209 10.0114 42 1 0.9366 -1.3052 9.4166 43 1 3.2719 1.0626 10.9270 44 1 2.2786 2.1195 9.8952 45 1 1.5001 0.8918 10.9224 46 1 0.5557 -0.3882 2.8142 47 1 1.5193 1.0614 2.3955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733534573.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:37 Heat of formation + Delta-G solvation = -43.731918 kcal Electronic energy + Delta-G solvation = -29758.289268 eV Core-core repulsion = 25557.201786 eV Total energy + Delta-G solvation = -4201.087482 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.74761 -40.13643 -38.98010 -38.00902 -36.55231 -35.54643 -35.38062 -32.54773 -31.16795 -30.38882 -29.72388 -28.35276 -27.34735 -26.58884 -24.48532 -23.01897 -22.80549 -21.47098 -20.91708 -19.87953 -19.50114 -18.14437 -17.82837 -17.52440 -17.15911 -16.91545 -16.27999 -15.98663 -15.44774 -15.26803 -14.98572 -14.75039 -14.47386 -14.38631 -14.04317 -13.82632 -13.64071 -13.29498 -13.10345 -12.97818 -12.87532 -12.73659 -12.59839 -12.42069 -12.20868 -11.92110 -11.60871 -11.32353 -11.02536 -10.85931 -10.79819 -10.64766 -10.59324 -10.51893 -10.27554 -9.98575 -9.80962 -9.60155 -9.46895 -8.95934 -8.76526 -7.29810 -5.78403 -3.14148 1.25313 1.53757 2.36486 2.41709 2.58489 2.95413 3.34357 3.38166 3.43860 3.57182 4.16484 4.17924 4.49556 4.56950 4.59285 4.63481 4.65237 4.71085 4.76889 4.92827 4.95288 4.99304 5.15843 5.17417 5.36034 5.39296 5.45878 5.55136 5.61003 5.77657 5.82373 5.91416 5.92841 6.06880 6.09649 6.19982 6.32646 6.39578 6.47635 6.65932 6.77376 6.93335 6.99393 7.32578 7.65736 7.91148 7.97632 8.40439 9.18729 9.91128 10.10871 11.39906 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026343 B = 0.002224 C = 0.002185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.663305 B =12587.058686 C =12813.545582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.191 3.809 3 H 0.059 0.941 4 N -0.746 5.746 5 C -0.240 4.240 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.884 3.116 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.277 1.277 13 C -0.106 4.106 14 H 0.081 0.919 15 C -0.119 4.119 16 C 0.092 3.908 17 N -0.612 5.612 18 C 0.516 3.484 19 O -0.535 6.535 20 C 0.105 3.895 21 N -0.562 5.562 22 C 0.527 3.473 23 O -0.466 6.466 24 C 0.067 3.933 25 N -0.630 5.630 26 C 0.121 3.879 27 C 0.705 3.295 28 O -0.537 6.537 29 C 0.116 3.884 30 H 0.046 0.954 31 H 0.041 0.959 32 H 0.059 0.941 33 H 0.360 0.640 34 H 0.259 0.741 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.063 0.937 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.186 -2.572 32.212 32.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.081 3.919 3 H 0.077 0.923 4 N -0.389 5.389 5 C -0.370 4.370 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.582 5.582 9 Si 0.715 3.285 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.203 1.203 13 C -0.127 4.127 14 H 0.099 0.901 15 C -0.157 4.157 16 C -0.031 4.031 17 N -0.347 5.347 18 C 0.303 3.697 19 O -0.412 6.412 20 C -0.020 4.020 21 N -0.308 5.308 22 C 0.314 3.686 23 O -0.335 6.335 24 C -0.059 4.059 25 N -0.369 5.369 26 C -0.019 4.019 27 C 0.407 3.593 28 O -0.410 6.410 29 C -0.006 4.006 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.099 0.901 46 H 0.097 0.903 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.778 -2.167 31.961 32.084 hybrid contribution 0.308 -1.390 -0.234 1.443 sum 2.086 -3.557 31.728 31.995 Atomic orbital electron populations 1.22469 0.98711 1.01028 1.00667 1.20099 0.92006 0.95450 0.84348 0.92330 1.42736 1.79765 1.09410 1.06987 1.19045 1.36857 0.95613 0.85515 0.89208 1.24669 1.01516 0.97428 0.95577 1.69697 1.52688 1.35547 1.00242 0.86557 0.78091 0.86920 0.76941 1.21213 1.21855 1.20346 1.22716 0.95037 1.00561 0.94336 0.90067 1.22617 0.96537 1.04286 0.92227 1.22274 0.85630 1.00541 0.94607 1.48488 1.14156 1.67202 1.04811 1.20269 0.89497 0.78165 0.81779 1.90719 1.25292 1.48950 1.76218 1.21436 0.96591 1.06161 0.77831 1.45877 1.57404 1.13517 1.13955 1.20871 0.75667 0.84212 0.87833 1.90842 1.50772 1.19037 1.72823 1.22493 1.04094 0.82996 0.96313 1.47420 1.63466 1.12507 1.13552 1.21536 1.02232 0.91337 0.86822 1.15748 0.79168 0.83307 0.81033 1.90993 1.49440 1.24826 1.75777 1.22332 0.92368 0.99982 0.85928 0.93534 0.94029 0.92186 0.80705 0.93082 0.89621 0.89732 0.91019 0.91255 0.85501 0.85694 0.85842 0.85802 0.91862 0.89842 0.90105 0.90323 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.27 37.15 0.34 -2.53 16 2 C 0.19 3.40 2.42 -67.93 -0.16 3.24 16 3 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 4 N -0.75 -16.55 4.78 -53.43 -0.26 -16.80 16 5 C -0.24 -6.51 10.41 -15.06 -0.16 -6.66 16 6 H 0.09 2.63 8.06 -52.49 -0.42 2.20 16 7 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -28.84 13.97 55.49 0.78 -28.07 16 9 Si 0.88 21.56 27.74 -169.99 -4.71 16.84 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.23 6.52 56.52 0.37 -5.86 16 13 C -0.11 -1.53 2.66 -88.47 -0.24 -1.77 16 14 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 15 C -0.12 -1.52 6.28 -24.89 -0.16 -1.68 16 16 C 0.09 0.95 6.49 -3.06 -0.02 0.93 16 17 N -0.61 -7.83 3.33 -170.52 -0.57 -8.39 16 18 C 0.52 7.12 7.92 -10.99 -0.09 7.03 16 19 O -0.54 -9.33 16.69 5.57 0.09 -9.24 16 20 C 0.10 1.07 5.37 -5.19 -0.03 1.04 16 21 N -0.56 -6.04 2.09 -122.02 -0.26 -6.30 16 22 C 0.53 5.08 8.31 -10.56 -0.09 4.99 16 23 O -0.47 -5.75 17.76 5.59 0.10 -5.65 16 24 C 0.07 0.35 7.66 -4.31 -0.03 0.32 16 25 N -0.63 -4.60 3.42 -187.94 -0.64 -5.24 16 26 C 0.12 0.50 11.18 59.84 0.67 1.17 16 27 C 0.71 7.94 8.31 -88.01 -0.73 7.21 16 28 O -0.54 -7.80 17.15 5.34 0.09 -7.71 16 29 C 0.12 1.60 5.27 -2.53 -0.01 1.59 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.04 0.61 7.23 -51.93 -0.38 0.23 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.36 7.88 5.66 -40.82 -0.23 7.65 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.08 1.15 7.99 -51.93 -0.41 0.73 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.13 1.09 7.86 -51.93 -0.41 0.68 16 40 H 0.13 1.00 8.00 -51.93 -0.42 0.58 16 41 H 0.12 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.12 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 44 H 0.08 0.45 8.03 -51.93 -0.42 0.04 16 45 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.08 1.14 7.94 -51.93 -0.41 0.73 16 47 H 0.07 1.02 8.04 -51.93 -0.42 0.60 16 LS Contribution 391.24 15.07 5.90 5.90 Total: -1.00 -37.88 391.24 -7.60 -45.48 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -7.33 Total: 4.31 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: -0.80 Total: 14.88 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.95 Total: -64.81 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.28 Total: -22.60 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -37.88 -7.60 -45.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733534573.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.751 kcal (2) G-P(sol) polarization free energy of solvation -37.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds