Wall clock time and date at job start Tue Mar 31 2020 22:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 113.99573 * 2 1 4 4 C 1.53001 * 109.47035 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47289 * 64.99465 * 4 3 2 6 6 N 1.28395 * 119.10423 * 270.28002 * 5 4 3 7 7 C 1.31403 * 122.26461 * 180.30079 * 6 5 4 8 8 C 1.47881 * 119.89273 * 179.70317 * 7 6 5 9 9 O 1.21559 * 120.00301 * 179.72279 * 8 7 6 10 10 N 1.34774 * 119.99979 * 359.72125 * 8 7 6 11 11 C 1.46507 * 120.00020 * 180.02562 * 10 8 7 12 12 H 1.08993 * 109.47109 * 325.00326 * 11 10 8 13 13 C 1.53006 * 109.46661 * 85.00514 * 11 10 8 14 14 C 1.52997 * 109.46993 * 204.99906 * 11 10 8 15 15 H 1.09005 * 109.47159 * 300.00253 * 14 11 10 16 16 C 1.52999 * 109.47264 * 60.00253 * 14 11 10 17 17 N 1.46498 * 109.47167 * 180.02562 * 14 11 10 18 18 C 1.36935 * 120.00239 * 154.99975 * 17 14 11 19 19 H 1.08004 * 120.00069 * 0.02562 * 18 17 14 20 20 C 1.38811 * 120.00368 * 180.02562 * 18 17 14 21 21 N 1.31624 * 119.99540 * 359.72375 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46758 * 269.72270 * 22 20 18 24 24 H 1.48499 * 109.47026 * 29.72118 * 22 20 18 25 25 H 1.48496 * 109.47474 * 149.72153 * 22 20 18 26 26 C 1.41582 * 120.21310 * 359.42064 * 7 6 5 27 27 C 1.36326 * 118.23621 * 0.28184 * 26 7 6 28 28 C 1.34614 * 119.09933 * 90.00641 * 5 4 3 29 29 O 1.21980 * 120.22424 * 0.02562 * 28 5 4 30 30 H 1.09004 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47435 * 299.99725 * 1 2 3 32 32 H 1.08997 * 109.47278 * 60.00078 * 1 2 3 33 33 H 1.08997 * 109.47434 * 60.00073 * 3 2 1 34 34 H 1.09006 * 109.47217 * 299.99993 * 3 2 1 35 35 H 1.09001 * 109.46973 * 304.99736 * 4 3 2 36 36 H 1.08997 * 109.47209 * 185.00084 * 4 3 2 37 37 H 0.97004 * 120.00037 * 359.97438 * 10 8 7 38 38 H 1.09003 * 109.46879 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.46812 * 299.99473 * 13 11 10 40 40 H 1.08993 * 109.47512 * 60.00060 * 13 11 10 41 41 H 1.09005 * 109.47033 * 59.99923 * 16 14 11 42 42 H 1.08994 * 109.47214 * 179.97438 * 16 14 11 43 43 H 1.08994 * 109.47102 * 299.99987 * 16 14 11 44 44 H 0.97004 * 119.99747 * 335.00715 * 17 14 11 45 45 H 0.97000 * 120.00481 * 0.27542 * 21 20 18 46 46 H 1.08004 * 120.87615 * 180.25223 * 26 7 6 47 47 H 1.08009 * 121.03046 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2526 6 7 4.0781 -0.7139 -1.3140 7 6 4.4724 -1.3346 -2.4030 8 6 4.5780 -2.8096 -2.4134 9 8 4.9377 -3.3861 -3.4212 10 7 4.2754 -3.5147 -1.3054 11 6 4.3805 -4.9759 -1.3155 12 1 4.0992 -5.3536 -2.2984 13 6 5.8215 -5.3856 -1.0048 14 6 3.4442 -5.5619 -0.2568 15 1 3.7256 -5.1841 0.7262 16 6 2.0032 -5.1521 -0.5673 17 7 3.5497 -7.0230 -0.2665 18 6 3.2423 -7.7392 0.8594 19 1 2.9216 -7.2269 1.7545 20 6 3.3428 -9.1237 0.8505 21 7 3.7284 -9.7484 -0.2420 22 14 2.9227 -10.1007 2.3862 23 1 4.1440 -10.2715 3.2136 24 1 1.8920 -9.3731 3.1692 25 1 2.3984 -11.4343 1.9965 26 6 4.7908 -0.5961 -3.5682 27 6 4.6817 0.7619 -3.5211 28 6 4.2564 1.3500 -2.3091 29 8 4.1448 2.5615 -2.2204 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6885 1.8464 0.8899 34 1 1.6885 1.8464 -0.8900 35 1 3.8514 0.5684 0.8410 36 1 3.9784 2.1766 0.0889 37 1 3.9887 -3.0546 -0.5009 38 1 5.8999 -6.4728 -1.0128 39 1 6.4886 -4.9681 -1.7591 40 1 6.1028 -5.0080 -0.0219 41 1 1.7218 -5.5299 -1.5503 42 1 1.3361 -5.5700 0.1866 43 1 1.9250 -4.0650 -0.5598 44 1 3.8375 -7.4832 -1.0705 45 1 3.9462 -9.2411 -1.0396 46 1 5.1121 -1.0955 -4.4704 47 1 4.9128 1.3694 -4.3837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733984905.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:59 Heat of formation + Delta-G solvation = -58.788481 kcal Electronic energy + Delta-G solvation = -30005.290293 eV Core-core repulsion = 25803.549910 eV Total energy + Delta-G solvation = -4201.740383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.31887 -41.03111 -39.00748 -38.95104 -38.36745 -36.10974 -35.85390 -33.79033 -32.79732 -31.61812 -30.60028 -29.93077 -27.67707 -26.66429 -25.77618 -25.73342 -24.53092 -23.53154 -22.32772 -21.62968 -19.89898 -19.50148 -19.19116 -18.07364 -17.88139 -17.60921 -17.28287 -17.13240 -16.65176 -16.34265 -16.08526 -15.75390 -15.62229 -15.40481 -15.20614 -14.82298 -14.74019 -14.45003 -14.27783 -14.16933 -13.87250 -13.54059 -13.29342 -13.18319 -12.98146 -12.90942 -12.78198 -12.58279 -12.43151 -12.26147 -12.23209 -11.84974 -11.64151 -11.53449 -11.45554 -11.19424 -10.97504 -10.94625 -10.71266 -10.23618 -9.73926 -9.08597 -8.31726 -5.26604 -0.67117 -0.04729 0.92976 1.61988 1.62583 1.72564 1.85854 1.89022 2.37278 2.65750 2.76273 2.83602 3.47011 3.52056 3.54783 3.68339 3.74441 3.81067 3.87237 3.96269 4.13964 4.25020 4.28053 4.33933 4.40996 4.49099 4.49124 4.53768 4.57214 4.67628 4.72217 4.79826 4.82670 4.84275 4.90616 4.92484 4.98954 5.10778 5.26496 5.41700 5.45737 5.67719 6.08611 6.27952 6.39725 6.55852 6.79610 7.02558 7.14224 8.03502 8.15258 9.20049 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014963 B = 0.002767 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.812821 B =10116.451151 C =11428.634089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.404 6.404 3 C 0.044 3.956 4 C 0.103 3.897 5 N -0.325 5.325 6 N -0.158 5.158 7 C 0.009 3.991 8 C 0.591 3.409 9 O -0.558 6.558 10 N -0.687 5.687 11 C 0.149 3.851 12 H 0.070 0.930 13 C -0.144 4.144 14 C 0.174 3.826 15 H 0.057 0.943 16 C -0.152 4.152 17 N -0.740 5.740 18 C -0.320 4.320 19 H 0.070 0.930 20 C -0.105 4.105 21 N -0.979 5.979 22 Si 1.127 2.873 23 H -0.286 1.286 24 H -0.272 1.272 25 H -0.298 1.298 26 C -0.024 4.024 27 C -0.191 4.191 28 C 0.472 3.528 29 O -0.555 6.555 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.102 0.898 34 H 0.045 0.955 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.417 0.583 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.034 0.966 42 H 0.040 0.960 43 H 0.070 0.930 44 H 0.359 0.641 45 H 0.245 0.755 46 H 0.177 0.823 47 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.663 27.189 -0.495 27.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.323 6.323 3 C -0.033 4.033 4 C -0.016 4.016 5 N -0.147 5.147 6 N 0.010 4.990 7 C -0.162 4.162 8 C 0.375 3.625 9 O -0.434 6.434 10 N -0.338 5.338 11 C 0.044 3.956 12 H 0.088 0.912 13 C -0.202 4.202 14 C 0.065 3.935 15 H 0.075 0.925 16 C -0.212 4.212 17 N -0.383 5.383 18 C -0.452 4.452 19 H 0.088 0.912 20 C -0.296 4.296 21 N -0.627 5.627 22 Si 0.953 3.047 23 H -0.213 1.213 24 H -0.198 1.198 25 H -0.225 1.225 26 C -0.048 4.048 27 C -0.221 4.221 28 C 0.273 3.727 29 O -0.436 6.436 30 H 0.106 0.894 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.120 0.880 34 H 0.064 0.936 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.254 0.746 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.192 0.808 45 H 0.055 0.945 46 H 0.194 0.806 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.825 25.781 0.610 25.852 hybrid contribution -0.020 1.730 -1.591 2.350 sum -1.845 27.511 -0.980 27.590 Atomic orbital electron populations 1.22860 0.79676 1.03482 1.00753 1.87946 1.21112 1.27636 1.95606 1.22949 0.92069 0.85631 1.02652 1.22523 0.94441 1.01444 0.83146 1.46988 1.50986 1.01799 1.14971 1.71126 1.05478 0.96233 1.26125 1.21574 1.07979 0.94501 0.92114 1.17388 0.77189 0.84667 0.83289 1.90820 1.48740 1.70348 1.33497 1.45718 1.66579 1.06742 1.14752 1.21021 0.95934 0.78986 0.99698 0.91186 1.21944 0.95361 1.01340 1.01582 1.20465 0.93074 0.83557 0.96405 0.92484 1.22261 0.98165 1.00486 1.00294 1.42459 1.81875 1.01448 1.12519 1.20335 1.40562 0.91967 0.92306 0.91232 1.27069 1.01119 0.95463 1.05946 1.70953 1.51189 1.37752 1.02806 0.82612 0.76422 0.74306 0.71343 1.21308 1.19771 1.22486 1.22348 0.90306 0.93670 0.98437 1.22864 1.05001 0.95385 0.98806 1.18449 0.80393 0.87974 0.85884 1.90952 1.55607 1.13450 1.83575 0.89423 0.92165 0.94119 0.87990 0.93647 0.85261 0.84597 0.74558 0.92964 0.92450 0.91879 0.94641 0.94060 0.91100 0.80833 0.94490 0.80569 0.79136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -7.05 10.53 -148.98 -1.57 -8.62 16 3 C 0.04 0.56 6.28 71.98 0.45 1.02 16 4 C 0.10 1.31 5.94 86.38 0.51 1.82 16 5 N -0.33 -5.96 3.17 -472.49 -1.50 -7.46 16 6 N -0.16 -3.15 9.99 -48.20 -0.48 -3.63 16 7 C 0.01 0.19 6.84 42.59 0.29 0.48 16 8 C 0.59 15.72 7.77 86.80 0.67 16.39 16 9 O -0.56 -18.08 16.05 -3.90 -0.06 -18.14 16 10 N -0.69 -17.98 4.37 -445.35 -1.95 -19.92 16 11 C 0.15 4.86 2.21 44.99 0.10 4.96 16 12 H 0.07 2.57 7.58 -2.39 -0.02 2.55 16 13 C -0.14 -4.75 9.33 71.98 0.67 -4.08 16 14 C 0.17 6.45 2.52 44.99 0.11 6.56 16 15 H 0.06 2.09 8.08 -2.38 -0.02 2.07 16 16 C -0.15 -5.22 9.34 71.98 0.67 -4.55 16 17 N -0.74 -35.56 4.43 -322.94 -1.43 -36.99 16 18 C -0.32 -17.24 9.93 84.03 0.83 -16.41 16 19 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 20 C -0.10 -5.95 5.50 84.86 0.47 -5.48 16 21 N -0.98 -60.60 13.70 21.65 0.30 -60.31 16 22 Si 1.13 51.17 29.92 68.60 2.05 53.22 16 23 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.30 -13.91 7.11 99.48 0.71 -13.21 16 26 C -0.02 -0.42 9.68 22.65 0.22 -0.20 16 27 C -0.19 -3.13 10.11 22.57 0.23 -2.90 16 28 C 0.47 9.63 7.47 85.01 0.63 10.26 16 29 O -0.56 -13.71 16.62 -5.25 -0.09 -13.80 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.68 8.14 -2.38 -0.02 0.67 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.14 1.40 7.36 -2.39 -0.02 1.38 16 37 H 0.42 9.49 7.72 -92.71 -0.72 8.77 16 38 H 0.05 2.00 7.44 -2.39 -0.02 1.98 16 39 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.07 1.98 7.45 -2.39 -0.02 1.96 16 44 H 0.36 18.44 6.41 -92.71 -0.59 17.84 16 45 H 0.24 15.12 6.77 -92.71 -0.63 14.49 16 46 H 0.18 2.58 7.72 -2.91 -0.02 2.56 16 47 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -73.12 397.83 2.22 -70.90 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: -0.17 Total: 35.24 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 7.12 Total: 9.51 kcal Atomic # 7 Polarization: -123.25 SS G_CDS: -5.06 Total: -128.31 kcal Atomic # 8 Polarization: -38.84 SS G_CDS: -1.72 Total: -40.56 kcal Atomic # 14 Polarization: 51.17 SS G_CDS: 2.05 Total: 53.22 kcal Total: -73.12 2.22 -70.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733984905.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.110 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds