Wall clock time and date at job start Tue Mar 31 2020 22:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99636 * 2 1 4 4 C 1.52998 * 109.46699 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47310 * 65.00180 * 4 3 2 6 6 N 1.28388 * 119.09863 * 269.99904 * 5 4 3 7 7 C 1.31405 * 122.26298 * 179.97438 * 6 5 4 8 8 C 1.47890 * 119.88874 * 180.02562 * 7 6 5 9 9 O 1.21557 * 119.99726 * 179.97438 * 8 7 6 10 10 N 1.34777 * 120.00166 * 0.02562 * 8 7 6 11 11 C 1.46499 * 119.99622 * 180.02562 * 10 8 7 12 12 H 1.08996 * 109.47688 * 34.99992 * 11 10 8 13 13 C 1.52999 * 109.47061 * 274.99352 * 11 10 8 14 14 C 1.53000 * 109.46778 * 154.99840 * 11 10 8 15 15 H 1.08991 * 109.47582 * 59.99726 * 14 11 10 16 16 C 1.52997 * 109.47235 * 299.99392 * 14 11 10 17 17 N 1.46508 * 109.46943 * 179.97438 * 14 11 10 18 18 C 1.36935 * 119.99775 * 205.00009 * 17 14 11 19 19 H 1.08004 * 120.00147 * 359.97438 * 18 17 14 20 20 C 1.38814 * 120.00078 * 180.02562 * 18 17 14 21 21 N 1.31616 * 119.99881 * 359.97438 * 20 18 17 22 22 Si 1.86792 * 120.00162 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47252 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47466 * 119.99709 * 22 20 18 25 25 H 1.48499 * 109.47387 * 239.99662 * 22 20 18 26 26 C 1.41571 * 120.21528 * 359.97438 * 7 6 5 27 27 C 1.36332 * 118.24014 * 0.02562 * 26 7 6 28 28 C 1.34606 * 119.10190 * 89.72198 * 5 4 3 29 29 O 1.21983 * 120.22483 * 0.02999 * 28 5 4 30 30 H 1.09008 * 109.47009 * 60.00436 * 1 2 3 31 31 H 1.08998 * 109.47086 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47609 * 300.00328 * 1 2 3 33 33 H 1.08999 * 109.47195 * 60.00104 * 3 2 1 34 34 H 1.08995 * 109.47261 * 299.99621 * 3 2 1 35 35 H 1.09001 * 109.47466 * 305.00104 * 4 3 2 36 36 H 1.09007 * 109.47318 * 184.99544 * 4 3 2 37 37 H 0.96993 * 120.00170 * 359.97438 * 10 8 7 38 38 H 1.08996 * 109.46864 * 60.00185 * 13 11 10 39 39 H 1.08994 * 109.47316 * 180.02562 * 13 11 10 40 40 H 1.09004 * 109.47235 * 300.00232 * 13 11 10 41 41 H 1.09006 * 109.47641 * 180.02562 * 16 14 11 42 42 H 1.09004 * 109.47246 * 300.00543 * 16 14 11 43 43 H 1.09003 * 109.46970 * 59.99928 * 16 14 11 44 44 H 0.96993 * 120.00027 * 24.99777 * 17 14 11 45 45 H 0.96998 * 120.00042 * 180.02562 * 21 20 18 46 46 H 1.08000 * 120.88210 * 179.97438 * 26 7 6 47 47 H 1.08002 * 121.03458 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 7 4.0843 -0.7140 -1.3101 7 6 4.4738 -1.3354 -2.4004 8 6 4.5788 -2.8105 -2.4103 9 8 4.9385 -3.3874 -3.4180 10 7 4.2748 -3.5153 -1.3025 11 6 4.3794 -4.9765 -1.3122 12 1 5.2197 -5.2765 -1.9383 13 6 3.0875 -5.5765 -1.8706 14 6 4.6011 -5.4814 0.1149 15 1 3.7609 -5.1815 0.7411 16 6 5.8929 -4.8814 0.6734 17 7 4.7051 -6.9427 0.1053 18 6 4.3961 -7.6586 1.2310 19 1 4.0761 -7.1458 2.1261 20 6 4.4952 -9.0431 1.2221 21 7 4.8856 -9.6679 0.1314 22 14 4.0744 -10.0195 2.7579 23 1 3.6659 -9.0883 3.8401 24 1 2.9587 -10.9534 2.4606 25 1 5.2644 -10.7932 3.1942 26 6 4.7921 -0.5974 -3.5659 27 6 4.6830 0.7607 -3.5194 28 6 4.2528 1.3488 -2.3091 29 8 4.1363 2.5600 -2.2224 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8507 0.5686 0.8427 36 1 3.9784 2.1766 0.0901 37 1 3.9874 -3.0550 -0.4985 38 1 2.9296 -5.2168 -2.8873 39 1 3.1652 -6.6637 -1.8775 40 1 2.2472 -5.2766 -1.2444 41 1 6.0511 -5.2414 1.6900 42 1 6.7333 -5.1813 0.0472 43 1 5.8152 -3.7942 0.6806 44 1 4.9928 -7.4031 -0.6985 45 1 4.9545 -10.6354 0.1251 46 1 5.1138 -1.0971 -4.4677 47 1 4.9148 1.3678 -4.3820 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733984908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:09 Heat of formation + Delta-G solvation = -34.493839 kcal Electronic energy + Delta-G solvation = -29885.950111 eV Core-core repulsion = 25685.263222 eV Total energy + Delta-G solvation = -4200.686889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.45911 -39.79191 -38.29959 -38.01338 -36.80048 -35.25319 -34.01557 -32.31444 -31.60829 -30.65406 -29.30010 -28.37574 -27.01334 -25.82542 -24.91501 -23.99103 -23.27220 -22.57832 -21.01078 -20.08586 -18.80656 -18.38110 -17.42929 -17.12527 -16.99169 -16.88818 -16.43873 -15.79637 -15.61693 -15.07557 -14.91213 -14.58301 -14.46337 -13.97362 -13.67244 -13.59854 -13.42092 -13.30841 -13.22488 -13.03986 -12.63796 -12.43490 -12.37687 -11.88904 -11.83193 -11.69456 -11.63831 -11.17866 -10.96529 -10.84371 -10.77046 -10.69344 -10.31850 -10.18582 -10.12060 -10.00148 -9.86135 -9.67808 -9.06685 -8.92676 -8.74093 -6.99086 -5.77987 -3.07358 0.15721 0.88822 1.72480 2.63460 3.06527 3.24059 3.39463 3.42514 3.48302 3.50438 3.68914 4.32464 4.39728 4.46124 4.47266 4.58347 4.68156 4.77701 4.91660 4.96848 5.01026 5.16338 5.25933 5.30849 5.36274 5.38852 5.49318 5.56296 5.68054 5.70966 5.75523 5.90325 6.12409 6.21015 6.38881 6.42781 6.53062 6.62162 6.66620 6.82295 6.92324 7.03452 7.17063 7.52799 7.69259 7.73349 8.21593 8.39731 9.51326 10.06484 10.41658 11.44466 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014952 B = 0.002681 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.167561 B =10442.396373 C =11454.360735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.044 3.956 4 C 0.111 3.889 5 N -0.330 5.330 6 N -0.162 5.162 7 C 0.019 3.981 8 C 0.586 3.414 9 O -0.530 6.530 10 N -0.694 5.694 11 C 0.134 3.866 12 H 0.088 0.912 13 C -0.153 4.153 14 C 0.169 3.831 15 H 0.052 0.948 16 C -0.165 4.165 17 N -0.718 5.718 18 C -0.237 4.237 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.025 4.025 27 C -0.199 4.199 28 C 0.480 3.520 29 O -0.533 6.533 30 H 0.039 0.961 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.115 0.885 36 H 0.123 0.877 37 H 0.407 0.593 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.052 0.948 41 H 0.055 0.945 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.385 0.615 45 H 0.255 0.745 46 H 0.164 0.836 47 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.104 24.410 -3.172 25.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.034 4.034 4 C -0.009 4.009 5 N -0.152 5.152 6 N 0.008 4.992 7 C -0.153 4.153 8 C 0.368 3.632 9 O -0.405 6.405 10 N -0.344 5.344 11 C 0.030 3.970 12 H 0.106 0.894 13 C -0.211 4.211 14 C 0.058 3.942 15 H 0.070 0.930 16 C -0.225 4.225 17 N -0.360 5.360 18 C -0.368 4.368 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.579 5.579 22 Si 0.737 3.263 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.049 4.049 27 C -0.229 4.229 28 C 0.280 3.720 29 O -0.411 6.411 30 H 0.057 0.943 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.243 0.757 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.220 0.780 45 H 0.065 0.935 46 H 0.181 0.819 47 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.133 24.308 -2.775 24.998 hybrid contribution -0.258 0.014 0.197 0.325 sum -5.391 24.322 -2.579 25.045 Atomic orbital electron populations 1.22775 0.80517 1.03327 0.99833 1.87995 1.20038 1.26382 1.95422 1.22866 0.92414 0.86217 1.01881 1.22201 0.94094 1.00670 0.83901 1.46761 1.51985 1.02272 1.14187 1.71160 1.05889 0.95757 1.26372 1.21926 1.06627 0.95917 0.90844 1.17168 0.78174 0.83654 0.84201 1.90830 1.47779 1.69453 1.32407 1.45953 1.66240 1.08217 1.14033 1.21450 0.99324 0.76902 0.99336 0.89357 1.22055 0.96575 1.02792 0.99670 1.20385 0.95675 0.86565 0.91543 0.92999 1.22453 1.00090 0.98112 1.01854 1.42295 1.80782 0.98695 1.14219 1.19234 1.37546 0.88855 0.91174 0.91085 1.24732 1.02309 0.96510 0.97278 1.69668 1.53501 1.07990 1.26703 0.86137 0.77528 0.80164 0.82453 1.20585 1.21909 1.21939 1.22287 0.90297 0.93638 0.98669 1.22642 1.06032 0.95466 0.98755 1.18141 0.80526 0.88138 0.85210 1.90960 1.54431 1.12600 1.83129 0.94282 0.89086 0.93853 0.90746 0.92497 0.86644 0.85865 0.75716 0.93344 0.89949 0.92937 0.92622 0.93394 0.94478 0.78034 0.93518 0.81861 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -3.59 10.54 -35.23 -0.37 -3.97 16 3 C 0.04 0.32 6.28 37.16 0.23 0.56 16 4 C 0.11 0.83 5.94 -4.04 -0.02 0.81 16 5 N -0.33 -3.35 3.17 -63.33 -0.20 -3.55 16 6 N -0.16 -1.77 10.00 33.41 0.33 -1.43 16 7 C 0.02 0.21 6.84 -82.83 -0.57 -0.35 16 8 C 0.59 8.18 7.77 -12.31 -0.10 8.08 16 9 O -0.53 -8.83 16.05 5.32 0.09 -8.74 16 10 N -0.69 -9.56 4.37 -54.74 -0.24 -9.80 16 11 C 0.13 2.22 2.21 -67.93 -0.15 2.07 16 12 H 0.09 1.61 7.58 -51.93 -0.39 1.22 16 13 C -0.15 -2.56 9.33 37.16 0.35 -2.21 16 14 C 0.17 3.15 2.52 -67.93 -0.17 2.97 16 15 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 16 C -0.16 -2.86 9.33 37.16 0.35 -2.51 16 17 N -0.72 -17.03 4.43 -53.42 -0.24 -17.27 16 18 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -27.42 13.06 55.49 0.72 -26.69 16 22 Si 0.91 21.89 29.55 -169.99 -5.02 16.87 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C -0.03 -0.25 9.67 -39.00 -0.38 -0.62 16 27 C -0.20 -1.85 10.11 -39.12 -0.40 -2.25 16 28 C 0.48 5.35 7.46 -15.18 -0.11 5.24 16 29 O -0.53 -7.02 16.62 4.93 0.08 -6.94 16 30 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16 31 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.12 0.78 7.37 -51.93 -0.38 0.39 16 37 H 0.41 5.03 7.72 -40.82 -0.32 4.72 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.08 1.57 7.44 -51.93 -0.39 1.18 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.53 7.44 -51.93 -0.39 0.15 16 44 H 0.39 9.84 7.58 -40.82 -0.31 9.53 16 45 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.16 1.36 7.72 -52.49 -0.41 0.95 16 47 H 0.17 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -32.96 399.55 -6.12 -39.07 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -7.19 Total: 10.17 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.10 Total: 6.25 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.38 Total: -58.75 kcal Atomic # 8 Polarization: -19.44 SS G_CDS: -0.20 Total: -19.64 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.96 -6.12 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733984908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.580 kcal (2) G-P(sol) polarization free energy of solvation -32.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds