Wall clock time and date at job start Tue Mar 31 2020 22:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.34773 * 119.99909 * 275.00159 * 4 2 1 6 6 O 1.21277 * 120.00549 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99847 * 180.02562 * 5 4 2 8 8 H 1.08988 * 110.43741 * 298.91138 * 7 5 4 9 9 C 1.54634 * 110.48735 * 176.22529 * 7 5 4 10 10 C 1.54478 * 101.76821 * 266.12315 * 9 7 5 11 11 N 1.46769 * 105.47178 * 334.58327 * 10 9 7 12 12 C 1.34419 * 111.29956 * 17.01576 * 11 10 9 13 13 O 1.21280 * 124.93789 * 179.56050 * 12 11 10 14 14 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 15 15 C 1.53941 * 113.73253 * 156.72310 * 14 2 1 16 16 N 1.47960 * 86.18133 * 221.92125 * 15 14 2 17 17 C 1.46903 * 110.99668 * 137.58386 * 16 15 14 18 18 C 1.50699 * 109.46931 * 70.64370 * 17 16 15 19 19 O 1.21294 * 120.00264 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99675 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99774 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00073 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00148 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99815 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00228 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46717 * 60.00643 * 25 23 21 27 27 H 1.48495 * 109.47080 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47070 * 300.00526 * 25 23 21 29 29 C 1.47958 * 90.76438 * 24.69085 * 16 15 14 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 34 34 H 1.09002 * 110.96745 * 24.24247 * 9 7 5 35 35 H 1.09001 * 110.96831 * 147.99638 * 9 7 5 36 36 H 1.08999 * 110.24460 * 215.58223 * 10 9 7 37 37 H 1.08997 * 110.31863 * 93.61943 * 10 9 7 38 38 H 0.96996 * 124.34816 * 197.04514 * 11 10 9 39 39 H 1.08996 * 112.93959 * 288.43201 * 14 2 1 40 40 H 1.09001 * 113.76064 * 336.24266 * 15 14 2 41 41 H 1.09004 * 113.75238 * 107.60426 * 15 14 2 42 42 H 1.09003 * 109.46453 * 190.63941 * 17 16 15 43 43 H 1.08991 * 109.47246 * 310.63983 * 17 16 15 44 44 H 0.96996 * 120.00144 * 359.97438 * 20 18 17 45 45 H 0.96996 * 120.00239 * 179.97438 * 24 23 21 46 46 H 1.09001 * 113.76030 * 220.99134 * 29 16 15 47 47 H 1.09004 * 113.76187 * 89.62476 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8590 1.1585 2.4116 7 6 2.6499 -0.7287 3.5874 8 1 1.9780 -1.5431 3.8579 9 6 2.8009 0.2651 4.7624 10 6 4.2864 0.6716 4.6423 11 7 4.9464 -0.4520 3.9669 12 6 4.0514 -1.2514 3.3613 13 8 4.3274 -2.2467 2.7255 14 6 2.0401 -0.7212 -1.2492 15 6 3.4671 -0.3152 -1.6598 16 7 2.9606 -0.3144 -3.0500 17 6 3.4683 0.8457 -3.7946 18 6 4.9421 0.6694 -4.0553 19 8 5.5134 -0.3246 -3.6594 20 7 5.6255 1.6168 -4.7275 21 6 6.9664 1.4567 -4.9643 22 1 7.4749 0.5712 -4.6124 23 6 7.6709 2.4332 -5.6578 24 7 7.0521 3.5103 -6.0863 25 14 9.4980 2.2154 -5.9797 26 1 9.7165 0.9813 -6.7765 27 1 10.0113 3.3882 -6.7320 28 1 10.2187 2.1035 -4.6861 29 6 1.5823 -0.0737 -2.5687 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 2.1484 1.1281 4.6297 35 1 2.6066 -0.2259 5.7160 36 1 4.7174 0.8224 5.6321 37 1 4.3835 1.5793 4.0468 38 1 5.9051 -0.5989 3.9589 39 1 1.8825 -1.7990 -1.2117 40 1 3.7641 0.6699 -1.3001 41 1 4.2153 -1.0837 -1.4655 42 1 2.9387 0.9282 -4.7438 43 1 3.3086 1.7512 -3.2095 44 1 5.1687 2.4119 -5.0438 45 1 7.5439 4.1921 -6.5701 46 1 0.8246 -0.6492 -3.1006 47 1 1.3280 0.9821 -2.4748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734121169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:52 Heat of formation + Delta-G solvation = -70.841233 kcal Electronic energy + Delta-G solvation = -29634.029605 eV Core-core repulsion = 25431.766575 eV Total energy + Delta-G solvation = -4202.263030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.32617 -40.23074 -39.01756 -37.73184 -36.71158 -35.35992 -33.86630 -32.32257 -31.35402 -31.06210 -29.40851 -28.14657 -26.19121 -25.47440 -24.26972 -23.14364 -21.97597 -21.28884 -20.50437 -19.47264 -19.14609 -17.99146 -17.83226 -17.73082 -16.65229 -16.07716 -15.96133 -15.70405 -15.26894 -14.86005 -14.74615 -14.58695 -14.28296 -14.05400 -13.90051 -13.83383 -13.67931 -13.36222 -13.11368 -13.04526 -12.64211 -12.46617 -12.24630 -12.00203 -11.78269 -11.74277 -11.67443 -11.44684 -11.04173 -10.91587 -10.62149 -10.56080 -10.42802 -10.36662 -10.18854 -10.05278 -9.49216 -9.47134 -9.32018 -8.60064 -8.18654 -7.93749 -6.39367 -3.80074 1.95644 2.35556 2.85882 3.04236 3.21601 3.26792 3.31557 3.84059 3.92152 3.96442 4.02213 4.21215 4.29686 4.43626 4.58926 4.59985 4.68989 4.96717 5.01152 5.08354 5.13847 5.20627 5.24271 5.27236 5.41463 5.44962 5.49544 5.57063 5.59245 5.72300 5.76239 5.78609 5.86033 5.98564 6.11301 6.24258 6.29822 6.33536 6.40311 6.58747 6.67612 7.22318 7.25933 7.57139 7.80571 7.90795 8.08067 8.64239 9.20363 9.56789 10.08975 10.78489 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002648 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.100229 B =10573.081638 C =11993.442674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.149 3.851 3 H 0.089 0.911 4 N -0.713 5.713 5 C 0.532 3.468 6 O -0.531 6.531 7 C -0.152 4.152 8 H 0.133 0.867 9 C -0.119 4.119 10 C 0.098 3.902 11 N -0.726 5.726 12 C 0.528 3.472 13 O -0.518 6.518 14 C -0.129 4.129 15 C 0.029 3.971 16 N -0.453 5.453 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.102 0.898 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.930 3.070 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.010 3.990 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.408 0.592 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.416 0.584 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.053 0.947 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.090 0.910 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.261 -4.149 21.457 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.045 3.955 3 H 0.107 0.893 4 N -0.364 5.364 5 C 0.316 3.684 6 O -0.408 6.408 7 C -0.177 4.177 8 H 0.151 0.849 9 C -0.157 4.157 10 C -0.027 4.027 11 N -0.382 5.382 12 C 0.312 3.688 13 O -0.393 6.393 14 C -0.148 4.148 15 C -0.100 4.100 16 N -0.175 5.175 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.119 4.119 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.243 0.757 34 H 0.129 0.871 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.255 0.745 39 H 0.122 0.878 40 H 0.082 0.918 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.071 0.929 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.819 -4.844 20.834 25.465 hybrid contribution 1.088 0.814 -0.023 1.359 sum -12.730 -4.030 20.811 24.726 Atomic orbital electron populations 1.22138 0.94780 1.02314 1.02622 1.21112 0.94224 0.97198 0.82990 0.89311 1.46072 1.66337 1.14721 1.09280 1.19700 0.77761 0.86942 0.83949 1.90707 1.50314 1.15301 1.84487 1.22180 0.97446 1.01645 0.96431 0.84908 1.22613 0.96638 1.00048 0.96437 1.22166 0.92681 0.89685 0.98156 1.46161 1.10029 1.27285 1.54733 1.20293 0.87289 0.82782 0.78399 1.90821 1.83106 1.25203 1.40189 1.23380 0.97496 1.01178 0.92778 1.23797 0.95770 1.01607 0.88785 1.68408 1.01871 1.35616 1.11608 1.22462 0.96673 0.92817 1.00246 1.19701 0.87652 0.85408 0.84329 1.90525 1.70049 1.30290 1.55323 1.41861 1.09504 1.19528 1.49306 1.19650 0.83964 1.06074 1.33142 0.88029 1.25252 1.00532 0.95210 0.96942 1.69604 1.37265 1.09096 1.38484 0.85923 0.82065 0.77656 0.78607 1.19872 1.20967 1.19946 1.23973 0.94192 0.99884 0.93893 0.92245 0.92181 0.91218 0.75684 0.87127 0.89191 0.89724 0.90297 0.74500 0.87772 0.91757 0.88806 0.89135 0.92881 0.77515 0.91847 0.89121 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.29 37.16 0.35 -1.07 16 2 C 0.15 1.60 2.42 -67.93 -0.16 1.44 16 3 H 0.09 1.13 7.37 -51.93 -0.38 0.75 16 4 N -0.71 -7.38 5.01 -53.81 -0.27 -7.65 16 5 C 0.53 5.70 7.15 -10.99 -0.08 5.62 16 6 O -0.53 -7.03 15.12 5.56 0.08 -6.95 16 7 C -0.15 -1.22 3.33 -91.78 -0.31 -1.53 16 8 H 0.13 0.78 8.14 -51.94 -0.42 0.35 16 9 C -0.12 -0.69 6.53 -25.10 -0.16 -0.85 16 10 C 0.10 0.58 7.78 -3.12 -0.02 0.56 16 11 N -0.73 -5.90 6.24 -59.20 -0.37 -6.27 16 12 C 0.53 5.52 7.65 -10.86 -0.08 5.44 16 13 O -0.52 -7.31 17.85 5.56 0.10 -7.21 16 14 C -0.13 -1.52 3.49 -89.68 -0.31 -1.84 16 15 C 0.03 0.48 6.31 -2.76 -0.02 0.46 16 16 N -0.45 -7.76 5.95 -239.71 -1.43 -9.19 16 17 C 0.01 0.19 5.31 -4.97 -0.03 0.16 16 18 C 0.44 10.90 7.59 -10.98 -0.08 10.82 16 19 O -0.58 -16.24 15.13 5.55 0.08 -16.15 16 20 N -0.57 -14.78 5.29 -10.96 -0.06 -14.83 16 21 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 24 N -0.90 -25.02 13.05 55.50 0.72 -24.30 16 25 Si 0.93 21.50 29.55 -169.99 -5.02 16.47 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 29 C 0.01 0.12 6.59 -2.76 -0.02 0.11 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 7.43 -51.93 -0.39 0.17 16 33 H 0.41 3.96 8.39 -40.82 -0.34 3.62 16 34 H 0.11 0.73 6.92 -51.93 -0.36 0.37 16 35 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.42 2.95 8.96 -40.82 -0.37 2.59 16 39 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.10 7.60 -51.93 -0.39 0.70 16 41 H 0.09 1.76 8.09 -51.93 -0.42 1.34 16 42 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 43 H 0.05 0.89 7.69 -51.93 -0.40 0.49 16 44 H 0.39 9.78 7.90 -40.82 -0.32 9.45 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 47 H 0.07 0.78 7.71 -51.93 -0.40 0.37 16 LS Contribution 389.92 15.07 5.88 5.88 Total: -1.00 -36.13 389.92 -8.54 -44.67 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -7.09 Total: 14.41 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -1.17 Total: 11.13 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -1.40 Total: -62.24 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: 0.27 Total: -30.31 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.13 -8.54 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734121169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.176 kcal (2) G-P(sol) polarization free energy of solvation -36.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds