Wall clock time and date at job start Tue Mar 31 2020 22:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 5 5 C 1.34773 * 119.99909 * 275.00159 * 4 2 1 6 6 O 1.21277 * 120.00549 * 359.97438 * 5 4 2 7 7 C 1.50703 * 119.99847 * 180.02562 * 5 4 2 8 8 H 1.08988 * 110.43741 * 298.91138 * 7 5 4 9 9 C 1.54634 * 110.48735 * 176.22529 * 7 5 4 10 10 C 1.54478 * 101.76821 * 266.12315 * 9 7 5 11 11 N 1.46769 * 105.47178 * 334.58327 * 10 9 7 12 12 C 1.34419 * 111.29956 * 17.01576 * 11 10 9 13 13 O 1.21280 * 124.93789 * 179.56050 * 12 11 10 14 14 C 1.52997 * 109.47164 * 240.00295 * 2 1 3 15 15 C 1.53941 * 113.73253 * 156.72310 * 14 2 1 16 16 N 1.47960 * 86.18133 * 221.92125 * 15 14 2 17 17 C 1.46903 * 110.99668 * 137.58386 * 16 15 14 18 18 C 1.50699 * 109.46931 * 70.64370 * 17 16 15 19 19 O 1.21294 * 120.00264 * 359.97438 * 18 17 16 20 20 N 1.34781 * 119.99675 * 180.02562 * 18 17 16 21 21 C 1.37097 * 119.99774 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00073 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00148 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99815 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00228 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46717 * 60.00643 * 25 23 21 27 27 H 1.48495 * 109.47080 * 180.02562 * 25 23 21 28 28 H 1.48500 * 109.47070 * 300.00526 * 25 23 21 29 29 C 1.47958 * 90.76438 * 24.69085 * 16 15 14 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97003 * 119.99825 * 95.00368 * 4 2 1 34 34 H 1.09002 * 110.96745 * 24.24247 * 9 7 5 35 35 H 1.09001 * 110.96831 * 147.99638 * 9 7 5 36 36 H 1.08999 * 110.24460 * 215.58223 * 10 9 7 37 37 H 1.08997 * 110.31863 * 93.61943 * 10 9 7 38 38 H 0.96996 * 124.34816 * 197.04514 * 11 10 9 39 39 H 1.08996 * 112.93959 * 288.43201 * 14 2 1 40 40 H 1.09001 * 113.76064 * 336.24266 * 15 14 2 41 41 H 1.09004 * 113.75238 * 107.60426 * 15 14 2 42 42 H 1.09003 * 109.46453 * 190.63941 * 17 16 15 43 43 H 1.08991 * 109.47246 * 310.63983 * 17 16 15 44 44 H 0.96996 * 120.00144 * 359.97438 * 20 18 17 45 45 H 0.96996 * 120.00239 * 179.97438 * 24 23 21 46 46 H 1.09001 * 113.76030 * 220.99134 * 29 16 15 47 47 H 1.09004 * 113.76187 * 89.62476 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1470 -0.0184 2.3571 6 8 1.8590 1.1585 2.4116 7 6 2.6499 -0.7287 3.5874 8 1 1.9780 -1.5431 3.8579 9 6 2.8009 0.2651 4.7624 10 6 4.2864 0.6716 4.6423 11 7 4.9464 -0.4520 3.9669 12 6 4.0514 -1.2514 3.3613 13 8 4.3274 -2.2467 2.7255 14 6 2.0401 -0.7212 -1.2492 15 6 3.4671 -0.3152 -1.6598 16 7 2.9606 -0.3144 -3.0500 17 6 3.4683 0.8457 -3.7946 18 6 4.9421 0.6694 -4.0553 19 8 5.5134 -0.3246 -3.6594 20 7 5.6255 1.6168 -4.7275 21 6 6.9664 1.4567 -4.9643 22 1 7.4749 0.5712 -4.6124 23 6 7.6709 2.4332 -5.6578 24 7 7.0521 3.5103 -6.0863 25 14 9.4980 2.2154 -5.9797 26 1 9.7165 0.9813 -6.7765 27 1 10.0113 3.3882 -6.7320 28 1 10.2187 2.1035 -4.6861 29 6 1.5823 -0.0737 -2.5687 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6318 1.1525 34 1 2.1484 1.1281 4.6297 35 1 2.6066 -0.2259 5.7160 36 1 4.7174 0.8224 5.6321 37 1 4.3835 1.5793 4.0468 38 1 5.9051 -0.5989 3.9589 39 1 1.8825 -1.7990 -1.2117 40 1 3.7641 0.6699 -1.3001 41 1 4.2153 -1.0837 -1.4655 42 1 2.9387 0.9282 -4.7438 43 1 3.3086 1.7512 -3.2095 44 1 5.1687 2.4119 -5.0438 45 1 7.5439 4.1921 -6.5701 46 1 0.8246 -0.6492 -3.1006 47 1 1.3280 0.9821 -2.4748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734121169.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:51 Heat of formation + Delta-G solvation = -103.027587 kcal Electronic energy + Delta-G solvation = -29635.425310 eV Core-core repulsion = 25431.766575 eV Total energy + Delta-G solvation = -4203.658735 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11773 -41.40959 -40.06953 -39.48142 -37.51251 -36.36635 -35.92079 -33.38738 -33.09391 -32.07819 -30.60232 -28.78600 -27.61614 -26.90700 -25.66764 -24.11659 -22.68082 -22.25088 -21.37831 -21.00647 -20.43331 -19.92385 -18.71986 -18.53756 -17.86247 -17.60259 -16.79141 -16.72694 -16.58131 -16.50233 -16.03436 -15.76205 -15.52266 -15.32565 -14.98397 -14.78024 -14.73076 -14.55333 -14.12087 -13.98868 -13.71318 -13.63564 -13.54861 -13.29117 -13.12278 -12.87980 -12.75428 -12.48038 -12.43267 -12.30516 -12.16017 -11.83886 -11.82883 -11.69230 -11.52730 -11.23367 -10.93678 -10.38017 -10.22165 -10.17177 -10.05879 -9.68414 -8.50327 -5.99578 1.13749 1.36265 1.37847 1.49276 1.54055 2.00412 2.09512 2.25794 2.37101 2.78779 3.15482 3.20749 3.21478 3.39649 3.41970 3.58560 3.68169 3.99866 4.12071 4.13231 4.19949 4.24310 4.30440 4.41536 4.43857 4.48244 4.49713 4.51199 4.72239 4.75265 4.79648 4.83918 4.98234 5.00852 5.10446 5.17286 5.30333 5.35939 5.39149 5.48147 5.68406 5.86594 5.88937 6.04760 6.39637 6.56062 7.04103 7.08385 7.09825 7.51018 8.07349 8.67043 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.002648 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.100229 B =10573.081638 C =11993.442674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.153 3.847 3 H 0.067 0.933 4 N -0.713 5.713 5 C 0.528 3.472 6 O -0.559 6.559 7 C -0.147 4.147 8 H 0.158 0.842 9 C -0.112 4.112 10 C 0.093 3.907 11 N -0.722 5.722 12 C 0.519 3.481 13 O -0.564 6.564 14 C -0.104 4.104 15 C 0.021 3.979 16 N -0.480 5.480 17 C 0.022 3.978 18 C 0.438 3.562 19 O -0.620 6.620 20 N -0.573 5.573 21 C -0.337 4.337 22 H 0.076 0.924 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.272 1.272 27 H -0.267 1.267 28 H -0.273 1.273 29 C 0.021 3.979 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.082 0.918 33 H 0.411 0.589 34 H 0.104 0.896 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.418 0.582 39 H 0.116 0.884 40 H 0.050 0.950 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.073 0.927 44 H 0.396 0.604 45 H 0.279 0.721 46 H 0.116 0.884 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.838 -3.743 22.396 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.049 3.951 3 H 0.086 0.914 4 N -0.364 5.364 5 C 0.314 3.686 6 O -0.438 6.438 7 C -0.171 4.171 8 H 0.176 0.824 9 C -0.149 4.149 10 C -0.030 4.030 11 N -0.377 5.377 12 C 0.304 3.696 13 O -0.443 6.443 14 C -0.124 4.124 15 C -0.108 4.108 16 N -0.203 5.203 17 C -0.109 4.109 18 C 0.225 3.775 19 O -0.506 6.506 20 N -0.211 5.211 21 C -0.466 4.466 22 H 0.094 0.906 23 C -0.212 4.212 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.197 1.197 27 H -0.191 1.191 28 H -0.198 1.198 29 C -0.107 4.107 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.123 0.877 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.084 0.916 38 H 0.258 0.742 39 H 0.134 0.866 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.131 0.869 43 H 0.091 0.909 44 H 0.230 0.770 45 H 0.088 0.912 46 H 0.134 0.866 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.421 -4.399 21.787 27.052 hybrid contribution 1.598 0.704 -0.294 1.771 sum -13.822 -3.695 21.493 25.820 Atomic orbital electron populations 1.22067 0.92561 1.03397 1.02929 1.21016 0.95745 0.95788 0.82597 0.91446 1.46131 1.66083 1.14885 1.09287 1.20143 0.77199 0.86688 0.84617 1.90692 1.51637 1.16457 1.85014 1.22234 0.96210 1.02711 0.95935 0.82418 1.22686 0.96049 0.99411 0.96801 1.22370 0.93142 0.88216 0.99296 1.46309 1.10257 1.27191 1.53898 1.20729 0.88578 0.82399 0.77875 1.90791 1.83985 1.27286 1.42250 1.23217 0.93684 1.01928 0.93524 1.23693 0.97713 0.99915 0.89497 1.68398 1.04747 1.35380 1.11743 1.22364 0.92155 0.94374 1.02016 1.20798 0.90080 0.84106 0.82495 1.90493 1.71740 1.31856 1.56527 1.41934 1.09052 1.20148 1.49943 1.19613 0.85502 1.06231 1.35253 0.90591 1.26048 1.04687 0.94515 0.95904 1.69662 1.38853 1.09358 1.38174 0.84996 0.76728 0.78112 0.78536 1.19690 1.19132 1.19779 1.24099 0.91893 1.01444 0.93312 0.90738 0.92877 0.89910 0.75283 0.87720 0.85997 0.86409 0.91619 0.74200 0.86642 0.93130 0.92405 0.86919 0.90895 0.76995 0.91179 0.86558 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.29 71.98 0.67 -1.63 16 2 C 0.15 3.13 2.42 44.99 0.11 3.24 16 3 H 0.07 1.70 7.37 -2.39 -0.02 1.69 16 4 N -0.71 -14.47 5.01 -442.54 -2.22 -16.69 16 5 C 0.53 11.07 7.15 87.66 0.63 11.69 16 6 O -0.56 -14.65 15.12 -3.02 -0.05 -14.70 16 7 C -0.15 -2.18 3.33 -11.54 -0.04 -2.22 16 8 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 9 C -0.11 -1.05 6.53 31.65 0.21 -0.85 16 10 C 0.09 0.97 7.78 86.83 0.68 1.65 16 11 N -0.72 -11.41 6.24 -459.80 -2.87 -14.28 16 12 C 0.52 10.80 7.65 87.90 0.67 11.47 16 13 O -0.56 -16.42 17.85 -3.03 -0.05 -16.47 16 14 C -0.10 -2.35 3.49 -10.14 -0.04 -2.39 16 15 C 0.02 0.71 6.31 86.41 0.55 1.26 16 16 N -0.48 -16.20 5.95 -912.30 -5.43 -21.63 16 17 C 0.02 0.82 5.31 85.56 0.45 1.28 16 18 C 0.44 22.11 7.59 87.66 0.67 22.77 16 19 O -0.62 -36.42 15.13 -3.07 -0.05 -36.47 16 20 N -0.57 -30.79 5.29 -306.97 -1.62 -32.41 16 21 C -0.34 -19.85 9.68 84.04 0.81 -19.04 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 23 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 24 N -0.92 -50.76 13.05 21.66 0.28 -50.48 16 25 Si 0.99 44.10 29.55 68.60 2.03 46.12 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 28 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 29 C 0.02 0.46 6.59 86.41 0.57 1.03 16 30 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.05 7.43 -2.39 -0.02 1.04 16 33 H 0.41 7.89 8.39 -92.71 -0.78 7.11 16 34 H 0.10 1.20 6.92 -2.39 -0.02 1.19 16 35 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.42 5.94 8.96 -92.71 -0.83 5.10 16 39 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.05 1.81 7.60 -2.39 -0.02 1.80 16 41 H 0.06 2.33 8.09 -2.38 -0.02 2.31 16 42 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.07 2.38 7.69 -2.39 -0.02 2.36 16 44 H 0.40 20.11 7.90 -92.71 -0.73 19.37 16 45 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.09 1.66 7.71 -2.38 -0.02 1.64 16 Total: -1.00 -81.91 389.92 -4.88 -86.79 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -1.31 Total: 42.13 kcal Atomic # 6 Polarization: 21.69 SS G_CDS: 6.40 Total: 28.09 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -11.85 Total: -135.48 kcal Atomic # 8 Polarization: -67.49 SS G_CDS: -0.15 Total: -67.64 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -81.91 -4.88 -86.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734121169.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.238 kcal (2) G-P(sol) polarization free energy of solvation -81.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds