Wall clock time and date at job start Tue Mar 31 2020 22:05:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46811 * 2 1 4 4 N 1.46498 * 109.47469 * 120.00068 * 2 1 3 5 5 C 1.34775 * 120.00090 * 275.00557 * 4 2 1 6 6 O 1.21282 * 119.99893 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00010 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47052 * 179.97438 * 7 5 4 9 9 H 1.08996 * 110.53330 * 52.17385 * 8 7 5 10 10 N 1.47310 * 110.60111 * 289.17852 * 8 7 5 11 11 C 1.34531 * 106.61746 * 241.47341 * 10 8 7 12 12 O 1.21537 * 123.77105 * 180.02562 * 11 10 8 13 13 N 1.33795 * 112.45942 * 359.97438 * 11 10 8 14 14 C 1.34769 * 111.64180 * 0.02562 * 13 11 10 15 15 O 1.21235 * 127.15313 * 179.97438 * 14 13 11 16 16 C 1.52999 * 109.47357 * 240.00347 * 2 1 3 17 17 C 1.53044 * 109.45897 * 64.99759 * 16 2 1 18 18 C 1.53194 * 109.31228 * 178.61692 * 17 16 2 19 19 N 1.46923 * 108.77818 * 54.63278 * 18 17 16 20 20 C 1.36935 * 120.63013 * 126.37083 * 19 18 17 21 21 H 1.07997 * 120.00003 * 332.24113 * 20 19 18 22 22 C 1.38811 * 119.99848 * 152.25074 * 20 19 18 23 23 N 1.31621 * 119.99881 * 335.23772 * 22 20 19 24 24 Si 1.86805 * 120.00093 * 155.52228 * 22 20 19 25 25 H 1.48497 * 109.47162 * 179.71744 * 24 22 20 26 26 H 1.48501 * 109.46645 * 299.71742 * 24 22 20 27 27 H 1.48500 * 109.47160 * 59.71867 * 24 22 20 28 28 C 1.46924 * 118.73831 * 306.64529 * 19 18 17 29 29 C 1.52763 * 109.00800 * 53.30883 * 28 19 18 30 30 H 1.09000 * 109.46946 * 60.00196 * 1 2 3 31 31 H 1.09006 * 109.46945 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47287 * 299.99513 * 1 2 3 33 33 H 0.96997 * 120.00182 * 94.99753 * 4 2 1 34 34 H 1.08998 * 109.47380 * 300.00201 * 7 5 4 35 35 H 1.09003 * 109.47028 * 60.00209 * 7 5 4 36 36 H 0.96993 * 126.69272 * 61.45215 * 10 8 7 37 37 H 0.96998 * 124.17736 * 180.02562 * 13 11 10 38 38 H 1.08995 * 109.44906 * 184.95942 * 16 2 1 39 39 H 1.08996 * 109.49642 * 58.66403 * 17 16 2 40 40 H 1.08999 * 109.49833 * 298.56820 * 17 16 2 41 41 H 1.09006 * 109.58170 * 294.84730 * 18 17 16 42 42 H 1.09001 * 109.58948 * 174.42581 * 18 17 16 43 43 H 0.96997 * 120.00123 * 354.51925 * 23 22 20 44 44 H 1.09002 * 109.59010 * 173.13891 * 28 19 18 45 45 H 1.08994 * 109.59213 * 293.56747 * 28 19 18 46 46 H 1.09003 * 109.56839 * 185.55247 * 29 28 19 47 47 H 1.09000 * 109.39069 * 65.51311 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8589 1.1585 2.4115 7 6 2.6489 -0.7289 3.5877 8 6 2.7010 0.2544 4.7587 9 1 1.7431 0.7612 4.8754 10 7 3.7875 1.2307 4.5679 11 6 4.6375 1.0665 5.5977 12 8 5.6513 1.7199 5.7477 13 7 4.2416 0.1043 6.4389 14 6 3.0852 -0.4605 6.0390 15 8 2.4785 -1.3546 6.5889 16 6 2.0401 -0.7212 -1.2493 17 6 1.6350 0.0695 -2.4955 18 6 2.1769 -0.6370 -3.7421 19 7 1.7131 -2.0311 -3.7347 20 6 1.0529 -2.5524 -4.8152 21 1 0.4799 -1.9046 -5.4620 22 6 1.1200 -3.9136 -5.0790 23 7 2.1435 -4.6183 -4.6454 24 14 -0.2385 -4.7436 -6.0564 25 1 0.0708 -6.1883 -6.2055 26 1 -1.5303 -4.5853 -5.3412 27 1 -0.3360 -4.1171 -7.3992 28 6 1.9658 -2.8534 -2.5437 29 6 1.4311 -2.1237 -1.3127 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.2491 -1.6317 1.1526 34 1 1.9762 -1.5508 3.8325 35 1 3.6481 -1.1213 3.3985 36 1 3.8735 1.8674 3.8413 37 1 4.7270 -0.1547 7.2377 38 1 3.1264 -0.7985 -1.2055 39 1 2.0497 1.0759 -2.4385 40 1 0.5480 0.1261 -2.5530 41 1 3.2667 -0.6144 -3.7301 42 1 1.8087 -0.1341 -4.6363 43 1 2.8888 -4.1745 -4.2113 44 1 1.4582 -3.8125 -2.6473 45 1 3.0378 -3.0153 -2.4320 46 1 1.7006 -2.6783 -0.4138 47 1 0.3459 -2.0464 -1.3808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734611722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:03 Heat of formation + Delta-G solvation = -100.333431 kcal Electronic energy + Delta-G solvation = -29734.912486 eV Core-core repulsion = 25531.370579 eV Total energy + Delta-G solvation = -4203.541908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.44816 -41.09121 -39.78444 -39.61849 -37.45178 -36.92004 -35.05729 -34.66517 -32.88050 -31.83104 -31.57859 -30.04934 -27.13617 -26.74372 -24.85728 -24.03312 -23.78521 -22.77145 -22.07795 -21.28125 -20.26254 -19.47169 -19.26541 -18.48888 -17.80466 -17.64307 -17.09856 -16.79716 -16.59954 -16.30579 -16.12345 -15.98658 -15.57975 -15.38702 -15.30844 -15.13404 -14.95970 -14.69792 -14.31893 -14.20948 -13.83962 -13.54267 -13.40712 -12.97645 -12.90058 -12.63277 -12.57739 -12.40972 -12.24568 -11.90752 -11.86657 -11.64195 -11.57501 -11.52827 -11.48959 -11.29482 -10.99710 -10.85961 -10.57835 -10.45156 -10.06717 -8.89772 -8.22256 -5.37480 0.45954 1.38618 1.59446 1.61313 1.65846 1.84868 1.89091 1.98375 2.28587 2.66974 2.91560 3.23221 3.42359 3.57082 3.73849 3.83197 3.85814 3.90164 3.99895 4.33870 4.35276 4.39961 4.47287 4.50724 4.58390 4.60076 4.64180 4.73269 4.84220 4.93597 4.99876 5.03924 5.10663 5.15998 5.18742 5.29635 5.31193 5.32009 5.52976 5.66159 5.73979 5.85051 5.86381 6.31619 6.42340 6.54346 7.06805 7.10070 7.21358 7.81684 8.25371 9.02455 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.002151 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.678556 B =13011.483887 C =13332.600486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.160 3.840 3 H 0.082 0.918 4 N -0.714 5.714 5 C 0.520 3.480 6 O -0.570 6.570 7 C -0.139 4.139 8 C 0.113 3.887 9 H 0.148 0.852 10 N -0.704 5.704 11 C 0.705 3.295 12 O -0.585 6.585 13 N -0.668 5.668 14 C 0.542 3.458 15 O -0.485 6.485 16 C -0.075 4.075 17 C -0.115 4.115 18 C 0.141 3.859 19 N -0.618 5.618 20 C -0.353 4.353 21 H 0.047 0.953 22 C -0.076 4.076 23 N -0.943 5.943 24 Si 1.111 2.889 25 H -0.293 1.293 26 H -0.279 1.279 27 H -0.279 1.279 28 C 0.154 3.846 29 C -0.117 4.117 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.411 0.589 34 H 0.144 0.856 35 H 0.124 0.876 36 H 0.447 0.553 37 H 0.442 0.558 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.012 0.988 42 H 0.046 0.954 43 H 0.254 0.746 44 H 0.041 0.959 45 H 0.001 0.999 46 H 0.078 0.922 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.037 9.142 20.918 22.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.100 0.900 4 N -0.365 5.365 5 C 0.307 3.693 6 O -0.450 6.450 7 C -0.180 4.180 8 C 0.004 3.996 9 H 0.166 0.834 10 N -0.368 5.368 11 C 0.404 3.596 12 O -0.462 6.462 13 N -0.339 5.339 14 C 0.328 3.672 15 O -0.355 6.355 16 C -0.094 4.094 17 C -0.155 4.155 18 C 0.016 3.984 19 N -0.343 5.343 20 C -0.483 4.483 21 H 0.065 0.935 22 C -0.272 4.272 23 N -0.585 5.585 24 Si 0.936 3.064 25 H -0.219 1.219 26 H -0.205 1.205 27 H -0.205 1.205 28 C 0.029 3.971 29 C -0.156 4.156 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.248 0.752 34 H 0.162 0.838 35 H 0.142 0.858 36 H 0.293 0.707 37 H 0.286 0.714 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.019 0.981 46 H 0.096 0.904 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.585 8.392 20.664 22.311 hybrid contribution 1.189 1.084 0.106 1.613 sum 0.605 9.476 20.770 22.838 Atomic orbital electron populations 1.22179 0.95084 1.02400 1.01991 1.20809 0.94200 0.96399 0.83100 0.89988 1.46087 1.66358 1.14825 1.09248 1.20629 0.76872 0.86972 0.84857 1.90714 1.51829 1.17055 1.85410 1.21915 1.06797 0.99039 0.90203 1.21835 0.94933 0.90280 0.92588 0.83441 1.45635 1.23636 1.40324 1.27234 1.15948 0.82877 0.80010 0.80762 1.91052 1.26950 1.51156 1.76999 1.44184 1.25680 1.35790 1.28269 1.20676 0.79613 0.81027 0.85901 1.90885 1.55864 1.27855 1.60886 1.21180 0.99869 0.94813 0.93585 1.21909 1.01133 0.98423 0.94000 1.21041 0.95348 0.85007 0.96992 1.44354 1.67163 1.09266 1.13517 1.20203 1.25952 0.94902 1.07211 0.93494 1.27100 1.02540 0.95780 1.01792 1.70905 1.06495 1.39389 1.41754 0.82895 0.73387 0.74899 0.75188 1.21874 1.20512 1.20469 1.20748 0.95686 0.94317 0.86390 1.21939 1.00511 0.95738 0.97403 0.91702 0.92080 0.92603 0.75179 0.83849 0.85791 0.70670 0.71407 0.91279 0.90249 0.92030 0.97001 0.93563 0.93582 0.94003 0.98055 0.90400 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.75 71.98 0.63 -2.72 16 2 C 0.16 3.26 2.35 44.99 0.11 3.37 16 3 H 0.08 1.81 7.58 -2.39 -0.02 1.80 16 4 N -0.71 -11.03 5.01 -442.54 -2.22 -13.24 16 5 C 0.52 7.59 7.72 87.66 0.68 8.26 16 6 O -0.57 -11.68 14.91 -3.04 -0.05 -11.73 16 7 C -0.14 -1.10 5.45 29.85 0.16 -0.94 16 8 C 0.11 1.08 3.14 44.37 0.14 1.22 16 9 H 0.15 1.30 7.89 -2.39 -0.02 1.28 16 10 N -0.70 -8.65 5.96 -459.61 -2.74 -11.39 16 11 C 0.70 11.09 8.99 179.44 1.61 12.71 16 12 O -0.58 -14.17 18.04 -3.83 -0.07 -14.24 16 13 N -0.67 -7.21 5.70 -441.11 -2.52 -9.73 16 14 C 0.54 6.14 8.14 87.94 0.72 6.86 16 15 O -0.48 -8.04 18.02 -2.89 -0.05 -8.09 16 16 C -0.08 -1.93 2.08 -10.77 -0.02 -1.95 16 17 C -0.12 -3.38 5.08 30.67 0.16 -3.22 16 18 C 0.14 5.56 6.52 86.36 0.56 6.12 16 19 N -0.62 -29.58 2.85 -699.93 -2.00 -31.58 16 20 C -0.35 -19.29 9.49 84.03 0.80 -18.50 16 21 H 0.05 2.59 7.94 -2.91 -0.02 2.57 16 22 C -0.08 -4.23 4.69 84.86 0.40 -3.83 16 23 N -0.94 -56.24 12.42 21.65 0.27 -55.97 16 24 Si 1.11 49.91 29.98 68.60 2.06 51.97 16 25 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 28 C 0.15 6.68 4.66 86.22 0.40 7.08 16 29 C -0.12 -3.53 4.70 30.53 0.14 -3.39 16 30 H 0.06 1.44 6.60 -2.39 -0.02 1.42 16 31 H 0.06 1.33 6.38 -2.38 -0.02 1.31 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.41 5.06 7.16 -92.71 -0.66 4.40 16 34 H 0.14 0.65 8.14 -2.39 -0.02 0.64 16 35 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.45 5.81 8.48 -92.71 -0.79 5.02 16 37 H 0.44 3.27 8.96 -92.71 -0.83 2.43 16 38 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 40 H 0.06 1.88 6.64 -2.39 -0.02 1.86 16 41 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.05 1.86 7.93 -2.39 -0.02 1.84 16 43 H 0.25 15.40 6.69 -92.71 -0.62 14.78 16 44 H 0.04 2.11 6.31 -2.39 -0.02 2.09 16 45 H 0.00 0.07 7.86 -2.39 -0.02 0.05 16 46 H 0.08 1.85 6.74 -2.39 -0.02 1.83 16 47 H 0.06 1.91 6.43 -2.39 -0.02 1.90 16 Total: -1.00 -74.64 374.43 -1.92 -76.56 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -1.09 Total: 16.38 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.48 Total: 11.07 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -9.20 Total: -121.92 kcal Atomic # 8 Polarization: -33.89 SS G_CDS: -0.17 Total: -34.06 kcal Atomic # 14 Polarization: 49.91 SS G_CDS: 2.06 Total: 51.97 kcal Total: -74.64 -1.92 -76.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734611722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.774 kcal (2) G-P(sol) polarization free energy of solvation -74.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds