Wall clock time and date at job start Tue Mar 31 2020 22:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46896 * 2 1 4 4 N 1.46501 * 109.47368 * 119.99884 * 2 1 3 5 5 C 1.36938 * 120.00052 * 275.00530 * 4 2 1 6 6 H 1.08003 * 119.99926 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00053 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00184 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00374 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46881 * 89.99820 * 9 7 5 11 11 H 1.48495 * 109.47587 * 209.99890 * 9 7 5 12 12 H 1.48494 * 109.47017 * 330.00170 * 9 7 5 13 13 C 1.52997 * 109.47312 * 240.00551 * 2 1 3 14 14 H 1.09001 * 110.88341 * 302.41911 * 13 2 1 15 15 C 1.55157 * 111.00357 * 178.54155 * 13 2 1 16 16 C 1.54320 * 102.94184 * 206.42119 * 15 13 2 17 17 N 1.47014 * 107.27192 * 22.19242 * 16 15 13 18 18 C 1.34780 * 125.65182 * 181.02497 * 17 16 15 19 19 O 1.21277 * 120.00497 * 180.02562 * 18 17 16 20 20 C 1.50705 * 119.99755 * 0.02562 * 18 17 16 21 21 N 1.46499 * 109.47079 * 180.02562 * 20 18 17 22 22 C 1.46414 * 119.53152 * 90.00420 * 21 20 18 23 23 C 1.53041 * 109.51748 * 144.14224 * 22 21 20 24 24 C 1.50813 * 109.18148 * 46.69678 * 23 22 21 25 25 O 1.21241 * 120.01331 * 145.78945 * 24 23 22 26 26 N 1.34557 * 119.96773 * 325.76231 * 24 23 22 27 27 C 1.34200 * 119.58421 * 270.24629 * 21 20 18 28 28 O 1.21534 * 119.13843 * 5.69907 * 27 21 20 29 29 C 1.47419 * 108.70404 * 1.28902 * 17 16 15 30 30 H 1.08999 * 109.47379 * 60.00302 * 1 2 3 31 31 H 1.09009 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47373 * 299.99729 * 1 2 3 33 33 H 0.96992 * 119.99847 * 95.00327 * 4 2 1 34 34 H 0.96993 * 120.00537 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.71754 * 88.06163 * 15 13 2 36 36 H 1.08992 * 110.72267 * 324.78490 * 15 13 2 37 37 H 1.09009 * 109.88114 * 262.77949 * 16 15 13 38 38 H 1.08999 * 110.01109 * 141.68405 * 16 15 13 39 39 H 1.09009 * 109.46532 * 60.00615 * 20 18 17 40 40 H 1.08997 * 109.47628 * 300.00783 * 20 18 17 41 41 H 1.08996 * 109.46168 * 24.13239 * 22 21 20 42 42 H 1.08997 * 109.46200 * 264.15939 * 22 21 20 43 43 H 1.08994 * 109.52224 * 286.78458 * 23 22 21 44 44 H 1.09000 * 109.52092 * 166.60627 * 23 22 21 45 45 H 0.97001 * 119.50400 * 184.41013 * 26 24 23 46 46 H 1.09002 * 110.37107 * 94.48291 * 29 17 16 47 47 H 1.09008 * 110.36943 * 216.80146 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8925 1.0405 2.4242 7 6 2.6123 -0.6616 3.5090 8 7 2.9255 -1.9387 3.4499 9 14 2.7914 0.2703 5.1179 10 1 1.5240 0.1790 5.8865 11 1 3.8963 -0.3227 5.9133 12 1 3.0960 1.6955 4.8332 13 6 2.0400 -0.7211 -1.2493 14 1 1.6548 -1.7398 -1.2944 15 6 3.5906 -0.7100 -1.3037 16 6 3.8841 -0.8146 -2.8151 17 7 2.6860 -0.3452 -3.5260 18 6 2.5342 -0.2991 -4.8644 19 8 1.4975 0.1091 -5.3436 20 6 3.6528 -0.7547 -5.7657 21 7 3.2441 -0.6062 -7.1646 22 6 3.5149 0.6502 -7.8661 23 6 3.8607 0.3555 -9.3275 24 6 2.8565 -0.6207 -9.8872 25 8 2.5199 -0.5449 -11.0495 26 7 2.3349 -1.5760 -9.0961 27 6 2.6224 -1.6211 -7.7846 28 8 2.3160 -2.6073 -7.1438 29 6 1.6802 0.0728 -2.5325 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6316 1.1526 34 1 3.2496 -2.3958 4.2416 35 1 4.0013 -1.5676 -0.7709 36 1 3.9841 0.2220 -0.8981 37 1 4.0909 -1.8512 -3.0817 38 1 4.7378 -0.1881 -3.0736 39 1 3.8798 -1.8013 -5.5623 40 1 4.5391 -0.1481 -5.5801 41 1 4.3533 1.1585 -7.3900 42 1 2.6319 1.2877 -7.8231 43 1 4.8598 -0.0762 -9.3855 44 1 3.8289 1.2807 -9.9030 45 1 1.7393 -2.2397 -9.4778 46 1 1.7500 1.1452 -2.3500 47 1 0.6786 -0.1904 -2.8727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754803526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:55 Heat of formation + Delta-G solvation = -75.159385 kcal Electronic energy + Delta-G solvation = -29566.233415 eV Core-core repulsion = 25363.783136 eV Total energy + Delta-G solvation = -4202.450279 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07576 -40.16609 -39.23748 -37.86795 -36.54334 -35.24517 -35.01350 -32.56311 -31.99342 -30.62669 -29.42229 -28.33563 -27.11618 -25.53988 -24.51459 -23.53925 -22.86164 -21.49392 -20.11602 -19.67390 -19.05440 -18.69698 -18.14604 -17.57824 -17.09138 -16.79873 -16.40154 -15.87189 -15.33365 -15.25029 -15.03444 -14.87609 -14.50789 -14.24503 -13.88576 -13.76354 -13.47166 -13.28529 -13.11843 -12.79768 -12.61692 -12.53995 -12.38614 -12.17902 -11.99844 -11.75020 -11.23901 -11.11557 -10.91699 -10.73830 -10.68769 -10.61961 -10.60750 -10.43856 -10.31817 -10.24236 -9.89552 -9.66839 -9.25553 -8.94333 -8.66969 -6.99462 -5.79803 -3.08328 1.30575 1.81855 2.46947 2.56783 2.78590 3.00944 3.40803 3.46417 3.47631 3.83053 3.98730 4.26465 4.36713 4.44274 4.54885 4.71916 4.75443 4.81915 4.90414 4.94556 5.09735 5.17277 5.28706 5.42331 5.50369 5.51115 5.63869 5.66313 5.84868 5.87933 5.94338 5.99453 6.04330 6.18042 6.19578 6.36275 6.42336 6.57286 6.61983 6.84484 6.90843 7.06721 7.07584 7.44715 7.67286 7.73416 8.04147 8.38693 9.50191 10.07208 10.42225 11.42728 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033800 B = 0.001977 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.191753 B =14160.163248 C =14235.809243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.049 0.951 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.103 4.103 14 H 0.081 0.919 15 C -0.115 4.115 16 C 0.094 3.906 17 N -0.614 5.614 18 C 0.511 3.489 19 O -0.537 6.537 20 C 0.116 3.884 21 N -0.600 5.600 22 C 0.109 3.891 23 C -0.157 4.157 24 C 0.524 3.476 25 O -0.504 6.504 26 N -0.674 5.674 27 C 0.715 3.285 28 O -0.548 6.548 29 C 0.115 3.885 30 H 0.037 0.963 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.116 0.884 44 H 0.128 0.872 45 H 0.427 0.573 46 H 0.069 0.931 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 4.795 -24.364 25.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.067 0.933 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.123 4.123 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.029 4.029 17 N -0.349 5.349 18 C 0.297 3.703 19 O -0.413 6.413 20 C -0.011 4.011 21 N -0.336 5.336 22 C -0.014 4.014 23 C -0.197 4.197 24 C 0.312 3.688 25 O -0.377 6.377 26 N -0.343 5.343 27 C 0.416 3.584 28 O -0.422 6.422 29 C -0.007 4.007 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.217 0.783 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.134 0.866 44 H 0.146 0.854 45 H 0.268 0.732 46 H 0.088 0.912 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.839 4.792 -24.774 25.900 hybrid contribution -0.144 -0.145 0.912 0.935 sum 5.696 4.647 -23.862 24.969 Atomic orbital electron populations 1.22493 0.99262 1.01001 1.00043 1.20127 0.91781 0.95119 0.85463 0.93309 1.42365 1.78143 1.10679 1.05118 1.19208 1.36347 0.93839 0.87308 0.91249 1.24720 1.02280 0.95972 0.97987 1.69651 1.50963 1.08639 1.28854 0.86222 0.77283 0.78777 0.84087 1.21813 1.21846 1.20822 1.22715 0.95380 1.00088 0.94087 0.90045 1.22559 0.96242 1.04311 0.92164 1.22254 0.87220 0.99349 0.94088 1.48576 1.17911 1.63704 1.04683 1.20640 0.89397 0.78740 0.81499 1.90707 1.29151 1.47108 1.74365 1.21328 0.95889 1.05394 0.78503 1.46522 1.61246 1.14150 1.11710 1.21708 1.03553 0.85746 0.90376 1.22274 0.99577 1.00883 0.96964 1.20983 0.81217 0.80687 0.85920 1.90804 1.58953 1.70937 1.16968 1.44244 1.48846 1.32448 1.08735 1.15481 0.78231 0.83539 0.81136 1.91033 1.55293 1.32152 1.63710 1.22359 0.92273 0.98893 0.87215 0.94427 0.93440 0.92730 0.78275 0.93548 0.89364 0.90118 0.91315 0.91448 0.86283 0.86668 0.87759 0.89931 0.86627 0.85424 0.73176 0.91234 0.90601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.34 37.16 0.35 -2.58 16 2 C 0.19 3.37 2.41 -67.93 -0.16 3.20 16 3 H 0.05 0.90 8.04 -51.92 -0.42 0.48 16 4 N -0.72 -16.72 4.82 -53.42 -0.26 -16.98 16 5 C -0.24 -6.20 9.93 -15.06 -0.15 -6.35 16 6 H 0.07 1.79 7.83 -52.48 -0.41 1.38 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -27.10 13.06 55.49 0.72 -26.37 16 9 Si 0.90 21.73 29.55 -169.99 -5.02 16.71 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 C -0.10 -1.52 2.64 -88.35 -0.23 -1.76 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 15 C -0.11 -1.51 6.13 -24.90 -0.15 -1.66 16 16 C 0.09 0.93 6.48 -3.07 -0.02 0.91 16 17 N -0.61 -7.41 3.32 -170.38 -0.57 -7.98 16 18 C 0.51 6.31 7.91 -10.98 -0.09 6.22 16 19 O -0.54 -8.71 16.68 5.56 0.09 -8.61 16 20 C 0.12 0.93 5.01 -5.19 -0.03 0.90 16 21 N -0.60 -4.93 2.28 -181.18 -0.41 -5.35 16 22 C 0.11 0.50 6.63 -4.07 -0.03 0.48 16 23 C -0.16 -0.58 6.28 -27.81 -0.17 -0.76 16 24 C 0.52 4.13 7.76 -11.03 -0.09 4.04 16 25 O -0.50 -5.59 17.93 5.59 0.10 -5.49 16 26 N -0.67 -5.88 5.18 -16.04 -0.08 -5.96 16 27 C 0.71 7.65 8.21 -87.83 -0.72 6.93 16 28 O -0.55 -7.95 16.66 5.34 0.09 -7.86 16 29 C 0.12 1.57 5.57 -2.41 -0.01 1.55 16 30 H 0.04 0.56 7.45 -51.93 -0.39 0.17 16 31 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.38 9.50 7.80 -40.82 -0.32 9.19 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.08 1.12 8.04 -51.93 -0.42 0.70 16 37 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.12 0.97 7.44 -51.92 -0.39 0.59 16 40 H 0.12 0.46 7.82 -51.93 -0.41 0.05 16 41 H 0.10 0.17 7.79 -51.93 -0.40 -0.23 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.12 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.13 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.43 3.43 8.86 -40.82 -0.36 3.07 16 46 H 0.07 0.93 8.01 -51.93 -0.42 0.51 16 47 H 0.08 1.12 7.95 -51.92 -0.41 0.71 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -36.33 389.23 -8.35 -44.69 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: -7.28 Total: 6.67 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -1.60 Total: 10.67 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.60 Total: -62.63 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.28 Total: -21.96 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.33 -8.35 -44.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.473 kcal (2) G-P(sol) polarization free energy of solvation -36.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds