Wall clock time and date at job start Tue Mar 31 2020 22:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09009 * 109.46896 * 2 1 4 4 N 1.46501 * 109.47368 * 119.99884 * 2 1 3 5 5 C 1.36938 * 120.00052 * 275.00530 * 4 2 1 6 6 H 1.08003 * 119.99926 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00053 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00184 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00374 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46881 * 89.99820 * 9 7 5 11 11 H 1.48495 * 109.47587 * 209.99890 * 9 7 5 12 12 H 1.48494 * 109.47017 * 330.00170 * 9 7 5 13 13 C 1.52997 * 109.47312 * 240.00551 * 2 1 3 14 14 H 1.09001 * 110.88341 * 302.41911 * 13 2 1 15 15 C 1.55157 * 111.00357 * 178.54155 * 13 2 1 16 16 C 1.54320 * 102.94184 * 206.42119 * 15 13 2 17 17 N 1.47014 * 107.27192 * 22.19242 * 16 15 13 18 18 C 1.34780 * 125.65182 * 181.02497 * 17 16 15 19 19 O 1.21277 * 120.00497 * 180.02562 * 18 17 16 20 20 C 1.50705 * 119.99755 * 0.02562 * 18 17 16 21 21 N 1.46499 * 109.47079 * 180.02562 * 20 18 17 22 22 C 1.46414 * 119.53152 * 90.00420 * 21 20 18 23 23 C 1.53041 * 109.51748 * 144.14224 * 22 21 20 24 24 C 1.50813 * 109.18148 * 46.69678 * 23 22 21 25 25 O 1.21241 * 120.01331 * 145.78945 * 24 23 22 26 26 N 1.34557 * 119.96773 * 325.76231 * 24 23 22 27 27 C 1.34200 * 119.58421 * 270.24629 * 21 20 18 28 28 O 1.21534 * 119.13843 * 5.69907 * 27 21 20 29 29 C 1.47419 * 108.70404 * 1.28902 * 17 16 15 30 30 H 1.08999 * 109.47379 * 60.00302 * 1 2 3 31 31 H 1.09009 * 109.46896 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47373 * 299.99729 * 1 2 3 33 33 H 0.96992 * 119.99847 * 95.00327 * 4 2 1 34 34 H 0.96993 * 120.00537 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.71754 * 88.06163 * 15 13 2 36 36 H 1.08992 * 110.72267 * 324.78490 * 15 13 2 37 37 H 1.09009 * 109.88114 * 262.77949 * 16 15 13 38 38 H 1.08999 * 110.01109 * 141.68405 * 16 15 13 39 39 H 1.09009 * 109.46532 * 60.00615 * 20 18 17 40 40 H 1.08997 * 109.47628 * 300.00783 * 20 18 17 41 41 H 1.08996 * 109.46168 * 24.13239 * 22 21 20 42 42 H 1.08997 * 109.46200 * 264.15939 * 22 21 20 43 43 H 1.08994 * 109.52224 * 286.78458 * 23 22 21 44 44 H 1.09000 * 109.52092 * 166.60627 * 23 22 21 45 45 H 0.97001 * 119.50400 * 184.41013 * 26 24 23 46 46 H 1.09002 * 110.37107 * 94.48291 * 29 17 16 47 47 H 1.09008 * 110.36943 * 216.80146 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1491 -0.0075 2.3758 6 1 1.8925 1.0405 2.4242 7 6 2.6123 -0.6616 3.5090 8 7 2.9255 -1.9387 3.4499 9 14 2.7914 0.2703 5.1179 10 1 1.5240 0.1790 5.8865 11 1 3.8963 -0.3227 5.9133 12 1 3.0960 1.6955 4.8332 13 6 2.0400 -0.7211 -1.2493 14 1 1.6548 -1.7398 -1.2944 15 6 3.5906 -0.7100 -1.3037 16 6 3.8841 -0.8146 -2.8151 17 7 2.6860 -0.3452 -3.5260 18 6 2.5342 -0.2991 -4.8644 19 8 1.4975 0.1091 -5.3436 20 6 3.6528 -0.7547 -5.7657 21 7 3.2441 -0.6062 -7.1646 22 6 3.5149 0.6502 -7.8661 23 6 3.8607 0.3555 -9.3275 24 6 2.8565 -0.6207 -9.8872 25 8 2.5199 -0.5449 -11.0495 26 7 2.3349 -1.5760 -9.0961 27 6 2.6224 -1.6211 -7.7846 28 8 2.3160 -2.6073 -7.1438 29 6 1.6802 0.0728 -2.5325 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.2491 -1.6316 1.1526 34 1 3.2496 -2.3958 4.2416 35 1 4.0013 -1.5676 -0.7709 36 1 3.9841 0.2220 -0.8981 37 1 4.0909 -1.8512 -3.0817 38 1 4.7378 -0.1881 -3.0736 39 1 3.8798 -1.8013 -5.5623 40 1 4.5391 -0.1481 -5.5801 41 1 4.3533 1.1585 -7.3900 42 1 2.6319 1.2877 -7.8231 43 1 4.8598 -0.0762 -9.3855 44 1 3.8289 1.2807 -9.9030 45 1 1.7393 -2.2397 -9.4778 46 1 1.7500 1.1452 -2.3500 47 1 0.6786 -0.1904 -2.8727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754803526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:54 Heat of formation + Delta-G solvation = -102.534941 kcal Electronic energy + Delta-G solvation = -29567.420508 eV Core-core repulsion = 25363.783136 eV Total energy + Delta-G solvation = -4203.637372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.75052 -41.11139 -40.04312 -38.99114 -37.26768 -36.73185 -35.74259 -34.24235 -32.63467 -31.85243 -30.77806 -29.46045 -28.15832 -26.13542 -26.01054 -24.64230 -23.79544 -22.76535 -21.09406 -20.84512 -19.76387 -19.35530 -19.12986 -18.80507 -18.30239 -17.56601 -17.45601 -16.67615 -16.55729 -16.15344 -15.84487 -15.72395 -15.56203 -15.32432 -15.24639 -14.87159 -14.62138 -14.26769 -14.04809 -13.89288 -13.71985 -13.57498 -13.37643 -13.19447 -12.98908 -12.84011 -12.77783 -12.55237 -12.28460 -12.15090 -11.95393 -11.89309 -11.62025 -11.51814 -11.40277 -11.39485 -11.35142 -11.22154 -10.89946 -9.96692 -9.63437 -8.95517 -7.88797 -5.15759 0.64582 1.17558 1.50286 1.51383 1.58562 1.59193 1.87144 2.13482 2.21516 2.59935 3.38016 3.40530 3.45552 3.63745 3.73039 3.75245 3.88239 3.99540 4.14533 4.27239 4.35878 4.37130 4.42339 4.45618 4.55189 4.59116 4.63056 4.71317 4.82942 4.86031 4.92187 4.93794 5.01713 5.05214 5.08277 5.20716 5.26732 5.38460 5.40923 5.43500 5.57421 5.62130 6.26112 6.33271 6.42577 6.53832 6.99307 7.12756 7.40296 8.16423 8.39977 9.34421 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.033800 B = 0.001977 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 828.191753 B =14160.163248 C =14235.809243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 H 0.051 0.949 4 N -0.730 5.730 5 C -0.229 4.229 6 H 0.074 0.926 7 C -0.075 4.075 8 N -0.968 5.968 9 Si 0.965 3.035 10 H -0.294 1.294 11 H -0.298 1.298 12 H -0.269 1.269 13 C -0.096 4.096 14 H 0.069 0.931 15 C -0.113 4.113 16 C 0.101 3.899 17 N -0.615 5.615 18 C 0.505 3.495 19 O -0.583 6.583 20 C 0.119 3.881 21 N -0.595 5.595 22 C 0.105 3.895 23 C -0.144 4.144 24 C 0.521 3.479 25 O -0.542 6.542 26 N -0.675 5.675 27 C 0.711 3.289 28 O -0.596 6.596 29 C 0.122 3.878 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.037 0.963 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.170 0.830 41 H 0.149 0.851 42 H 0.068 0.932 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.424 0.576 46 H 0.076 0.924 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.826 6.806 -25.582 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 H 0.069 0.931 4 N -0.370 5.370 5 C -0.361 4.361 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.796 3.204 10 H -0.222 1.222 11 H -0.225 1.225 12 H -0.194 1.194 13 C -0.117 4.117 14 H 0.087 0.913 15 C -0.151 4.151 16 C -0.021 4.021 17 N -0.349 5.349 18 C 0.294 3.706 19 O -0.463 6.463 20 C -0.008 4.008 21 N -0.330 5.330 22 C -0.016 4.016 23 C -0.183 4.183 24 C 0.312 3.688 25 O -0.417 6.417 26 N -0.343 5.343 27 C 0.413 3.587 28 O -0.473 6.473 29 C -0.001 4.001 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.205 0.795 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.188 0.812 41 H 0.167 0.833 42 H 0.086 0.914 43 H 0.162 0.838 44 H 0.167 0.833 45 H 0.265 0.735 46 H 0.094 0.906 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.109 6.870 -26.023 28.110 hybrid contribution -0.931 -0.736 1.234 1.712 sum 7.179 6.134 -24.789 26.527 Atomic orbital electron populations 1.22380 0.98620 1.00560 1.00504 1.20297 0.92042 0.95073 0.85160 0.93143 1.42518 1.78243 1.10287 1.05944 1.19555 1.34229 0.94065 0.88277 0.90807 1.25440 1.03424 0.96827 1.01070 1.69798 1.52875 1.10061 1.29180 0.85252 0.76571 0.78235 0.80390 1.22186 1.22453 1.19378 1.22494 0.96918 0.99075 0.93163 0.91273 1.22483 0.94425 1.03352 0.94822 1.22334 0.87354 1.01271 0.91107 1.48640 1.18029 1.63477 1.04723 1.21501 0.89899 0.77668 0.81562 1.90690 1.31288 1.49295 1.75071 1.21563 0.95570 1.06351 0.77272 1.46709 1.59949 1.14508 1.11864 1.22022 1.04707 0.84043 0.90872 1.22380 0.99173 1.00578 0.96217 1.21863 0.81142 0.80517 0.85297 1.90791 1.60397 1.71898 1.18593 1.44309 1.48730 1.32773 1.08469 1.15732 0.77982 0.83684 0.81330 1.90996 1.57368 1.34204 1.64764 1.22134 0.92196 0.98890 0.86913 0.91722 0.94340 0.94420 0.79515 0.94257 0.90807 0.90695 0.89788 0.87403 0.86211 0.81246 0.83337 0.91354 0.83752 0.83255 0.73534 0.90624 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.58 9.34 71.98 0.67 -4.91 16 2 C 0.18 6.59 2.41 44.99 0.11 6.70 16 3 H 0.05 1.82 8.04 -2.38 -0.02 1.80 16 4 N -0.73 -34.12 4.82 -322.94 -1.56 -35.67 16 5 C -0.23 -12.04 9.93 84.03 0.83 -11.21 16 6 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 7 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 8 N -0.97 -57.23 13.06 21.65 0.28 -56.95 16 9 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 10 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 11 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 12 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 13 C -0.10 -2.81 2.64 -9.33 -0.02 -2.84 16 14 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 15 C -0.11 -2.80 6.13 31.78 0.19 -2.61 16 16 C 0.10 1.66 6.48 86.73 0.56 2.22 16 17 N -0.61 -13.37 3.32 -811.36 -2.70 -16.07 16 18 C 0.50 11.33 7.91 87.66 0.69 12.03 16 19 O -0.58 -18.45 16.68 -3.02 -0.05 -18.50 16 20 C 0.12 1.46 5.01 85.63 0.43 1.89 16 21 N -0.60 -8.14 2.28 -845.74 -1.93 -10.07 16 22 C 0.10 0.56 6.63 86.41 0.57 1.13 16 23 C -0.14 -0.54 6.28 29.90 0.19 -0.36 16 24 C 0.52 7.55 7.76 87.73 0.68 8.23 16 25 O -0.54 -11.77 17.93 -2.91 -0.05 -11.82 16 26 N -0.68 -11.62 5.18 -441.71 -2.29 -13.90 16 27 C 0.71 14.64 8.21 179.37 1.47 16.11 16 28 O -0.60 -17.41 16.66 -3.82 -0.06 -17.47 16 29 C 0.12 3.18 5.57 86.93 0.48 3.67 16 30 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 31 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.37 18.90 7.80 -92.71 -0.72 18.18 16 34 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.07 1.95 8.04 -2.39 -0.02 1.93 16 37 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.12 1.57 7.44 -2.38 -0.02 1.56 16 40 H 0.17 0.23 7.82 -2.39 -0.02 0.21 16 41 H 0.15 -0.45 7.79 -2.39 -0.02 -0.47 16 42 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.14 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.42 7.21 8.86 -92.71 -0.82 6.39 16 46 H 0.08 1.88 8.01 -2.39 -0.02 1.87 16 47 H 0.06 1.75 7.95 -2.38 -0.02 1.73 16 Total: -1.00 -83.08 389.23 0.47 -82.61 By element: Atomic # 1 Polarization: 25.13 SS G_CDS: -0.54 Total: 24.59 kcal Atomic # 6 Polarization: 19.02 SS G_CDS: 7.34 Total: 26.36 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -8.19 Total: -132.66 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.17 Total: -47.79 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -83.08 0.47 -82.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754803526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.923 kcal (2) G-P(sol) polarization free energy of solvation -83.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds