Wall clock time and date at job start Tue Mar 31 2020 22:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47411 * 2 1 4 4 N 1.46503 * 109.47119 * 119.99761 * 2 1 3 5 5 C 1.34772 * 120.00214 * 275.00070 * 4 2 1 6 6 O 1.21291 * 119.99675 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00321 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.47223 * 180.02562 * 7 5 4 9 9 C 1.34765 * 124.17435 * 269.72134 * 8 7 5 10 10 O 1.21234 * 127.15809 * 0.02562 * 9 8 7 11 11 C 1.51583 * 105.68549 * 179.97438 * 9 8 7 12 12 N 1.47317 * 103.59100 * 0.32076 * 11 9 8 13 13 C 1.33792 * 124.18160 * 90.02248 * 8 7 5 14 14 O 1.21540 * 123.76793 * 359.96132 * 13 8 7 15 15 C 1.53002 * 109.47000 * 239.99514 * 2 1 3 16 16 C 1.53041 * 109.45892 * 180.02562 * 15 2 1 17 17 C 1.53192 * 109.31528 * 178.60312 * 16 15 2 18 18 N 1.46925 * 108.76193 * 54.65744 * 17 16 15 19 19 C 1.36936 * 120.63030 * 126.40785 * 18 17 16 20 20 H 1.07999 * 120.00001 * 331.82647 * 19 18 17 21 21 C 1.38818 * 120.00038 * 151.82238 * 19 18 17 22 22 N 1.31619 * 119.99776 * 343.07183 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 163.06804 * 21 19 18 24 24 H 1.48503 * 109.46959 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47327 * 120.00417 * 23 21 19 26 26 H 1.48504 * 109.47254 * 240.00404 * 23 21 19 27 27 C 1.46928 * 118.74121 * 306.38249 * 18 17 16 28 28 C 1.53036 * 109.45735 * 59.97832 * 15 2 1 29 29 H 1.09004 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47174 * 60.00434 * 1 2 3 31 31 H 1.08997 * 109.47214 * 300.00314 * 1 2 3 32 32 H 0.97000 * 119.99786 * 94.99943 * 4 2 1 33 33 H 1.09000 * 109.47148 * 299.99597 * 7 5 4 34 34 H 1.08996 * 109.47251 * 59.99609 * 7 5 4 35 35 H 1.09004 * 110.76613 * 241.71591 * 11 9 8 36 36 H 1.08994 * 110.56445 * 118.83118 * 11 9 8 37 37 H 0.97001 * 126.68560 * 179.76808 * 12 11 9 38 38 H 1.08988 * 109.46401 * 299.99746 * 15 2 1 39 39 H 1.09003 * 109.50284 * 298.57161 * 16 15 2 40 40 H 1.09004 * 109.49907 * 58.66426 * 16 15 2 41 41 H 1.08993 * 109.59938 * 294.87075 * 17 16 15 42 42 H 1.08998 * 109.70633 * 174.50614 * 17 16 15 43 43 H 0.97000 * 119.99690 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58471 * 293.82895 * 27 18 17 45 45 H 1.08994 * 109.70721 * 173.46836 * 27 18 17 46 46 H 1.09001 * 109.49570 * 301.32936 * 28 15 2 47 47 H 1.09002 * 109.50466 * 61.39679 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4114 7 6 2.6499 -0.7284 3.5875 8 7 2.6985 0.2128 4.7091 9 6 3.7724 0.9653 5.0199 10 8 4.8398 0.9905 4.4457 11 6 3.3677 1.7747 6.2360 12 7 1.9854 1.3379 6.4981 13 6 1.6842 0.4273 5.5549 14 8 0.6112 -0.1386 5.4802 15 6 2.0400 -0.7214 -1.2492 16 6 3.5704 -0.7218 -1.2486 17 6 4.0773 -1.4750 -2.4825 18 7 3.4748 -0.8771 -3.6817 19 6 4.2607 -0.4517 -4.7193 20 1 5.2719 -0.1223 -4.5310 21 6 3.7578 -0.4439 -6.0131 22 7 2.6780 -1.1381 -6.3036 23 14 4.6135 0.5518 -7.3418 24 1 5.7967 1.2370 -6.7622 25 1 5.0523 -0.3538 -8.4339 26 1 3.6723 1.5635 -7.8858 27 6 2.0130 -0.7449 -3.7469 28 6 1.5292 -0.0001 -2.4986 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 2.2490 -1.6317 1.1527 33 1 1.9777 -1.5507 3.8326 34 1 3.6492 -1.1202 3.3979 35 1 3.3976 2.8421 6.0173 36 1 4.0113 1.5399 7.0837 37 1 1.4055 1.6468 7.2117 38 1 1.6766 -1.7489 -1.2490 39 1 3.9346 0.3053 -1.2740 40 1 3.9337 -1.2148 -0.3469 41 1 3.7904 -2.5242 -2.4138 42 1 5.1629 -1.3961 -2.5409 43 1 2.3263 -1.1323 -7.2076 44 1 1.5577 -1.7346 -3.7812 45 1 1.7341 -0.1833 -4.6385 46 1 0.4394 0.0205 -2.4868 47 1 1.9122 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755846258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:23 Heat of formation + Delta-G solvation = -56.507551 kcal Electronic energy + Delta-G solvation = -30034.076928 eV Core-core repulsion = 25832.435453 eV Total energy + Delta-G solvation = -4201.641475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.71346 -39.92337 -38.91076 -37.97543 -36.44400 -35.47794 -34.88056 -32.93629 -31.46701 -29.84194 -29.44280 -28.59028 -27.75407 -25.38991 -23.41993 -23.19307 -22.06511 -21.69884 -20.48755 -20.39802 -19.15592 -18.43519 -18.02163 -17.16320 -16.86207 -16.50243 -16.38605 -15.68957 -15.46562 -15.14913 -14.84948 -14.53381 -14.38976 -14.24216 -13.98732 -13.62741 -13.53339 -13.38806 -13.31823 -12.96387 -12.60672 -12.33791 -12.18621 -11.81424 -11.38749 -11.35628 -11.12589 -10.98508 -10.76967 -10.71359 -10.65241 -10.41200 -10.19593 -10.15186 -9.97939 -9.91393 -9.74728 -9.53562 -9.40571 -9.00991 -8.45751 -6.64943 -5.77628 -3.19733 1.27861 1.67991 2.45796 2.56604 2.73208 3.17552 3.38069 3.46148 3.48549 3.59075 4.32559 4.48794 4.51282 4.54654 4.69241 4.78839 4.94415 5.03513 5.19373 5.22591 5.34590 5.39579 5.53615 5.67803 5.72955 5.87459 5.96002 6.08771 6.17465 6.28553 6.31999 6.34193 6.45177 6.51386 6.60999 6.62751 6.72310 6.78410 6.85969 6.97174 7.00638 7.35942 7.42586 7.67359 7.72083 7.81609 8.08236 8.46998 9.23327 9.86853 10.43517 11.30855 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.002315 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.716340 B =12094.210476 C =12706.149089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.085 0.915 4 N -0.713 5.713 5 C 0.501 3.499 6 O -0.534 6.534 7 C 0.099 3.901 8 N -0.561 5.561 9 C 0.525 3.475 10 O -0.463 6.463 11 C 0.066 3.934 12 N -0.728 5.728 13 C 0.708 3.292 14 O -0.540 6.540 15 C -0.084 4.084 16 C -0.126 4.126 17 C 0.146 3.854 18 N -0.592 5.592 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.901 3.099 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.172 3.828 28 C -0.134 4.134 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.401 0.599 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.442 0.558 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.016 0.984 42 H 0.052 0.948 43 H 0.253 0.747 44 H 0.017 0.983 45 H 0.087 0.913 46 H 0.054 0.946 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 1.673 27.000 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.104 0.896 4 N -0.365 5.365 5 C 0.285 3.715 6 O -0.410 6.410 7 C -0.027 4.027 8 N -0.307 5.307 9 C 0.312 3.688 10 O -0.331 6.331 11 C -0.062 4.062 12 N -0.393 5.393 13 C 0.408 3.592 14 O -0.413 6.413 15 C -0.103 4.103 16 C -0.165 4.165 17 C 0.019 3.981 18 N -0.315 5.315 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.046 3.954 28 C -0.173 4.173 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.072 0.928 32 H 0.235 0.765 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.142 0.858 37 H 0.286 0.714 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.035 0.965 45 H 0.105 0.895 46 H 0.072 0.928 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.780 2.162 26.415 26.564 hybrid contribution 0.217 0.185 -0.487 0.564 sum -1.564 2.347 25.928 26.081 Atomic orbital electron populations 1.22196 0.95401 1.02047 1.02362 1.21202 0.93785 0.97539 0.83283 0.89650 1.46026 1.66769 1.14121 1.09544 1.20630 0.78310 0.87787 0.84786 1.90722 1.49777 1.15755 1.84753 1.21488 1.05884 0.91603 0.83690 1.45794 1.15489 1.40978 1.28450 1.20895 0.83317 0.79377 0.85219 1.90858 1.22789 1.63744 1.55759 1.22452 0.84344 1.01777 0.97611 1.45343 1.16157 1.44524 1.33267 1.15751 0.83298 0.80490 0.79618 1.91029 1.22491 1.53224 1.74595 1.21339 0.96447 0.99313 0.93171 1.22045 0.94459 1.01404 0.98595 1.20885 0.96557 0.93872 0.86745 1.44059 1.02051 1.69881 1.15537 1.19227 0.97227 1.35928 0.85584 0.91749 1.25040 0.98446 0.99196 0.97059 1.70039 1.24614 1.40987 1.19164 0.86244 0.78971 0.79825 0.81880 1.20273 1.21763 1.21564 1.20761 0.83277 0.96807 0.94555 1.22270 0.98869 1.00083 0.96107 0.92545 0.90932 0.92780 0.76476 0.85528 0.85564 0.85678 0.85770 0.71365 0.91383 0.92364 0.93391 0.96651 0.92945 0.93729 0.96492 0.89470 0.92780 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.13 37.16 0.34 -1.80 16 2 C 0.15 2.04 2.16 -67.93 -0.15 1.89 16 3 H 0.09 1.40 7.58 -51.93 -0.39 1.01 16 4 N -0.71 -8.27 4.36 -53.81 -0.23 -8.51 16 5 C 0.50 6.41 7.86 -10.99 -0.09 6.33 16 6 O -0.53 -9.00 16.09 5.55 0.09 -8.91 16 7 C 0.10 0.91 6.18 -5.19 -0.03 0.87 16 8 N -0.56 -5.56 2.09 -122.03 -0.26 -5.82 16 9 C 0.52 4.81 8.31 -10.56 -0.09 4.73 16 10 O -0.46 -5.68 17.75 5.60 0.10 -5.58 16 11 C 0.07 0.29 7.97 -4.31 -0.03 0.25 16 12 N -0.73 -4.18 6.58 -65.73 -0.43 -4.61 16 13 C 0.71 7.24 8.62 -88.03 -0.76 6.48 16 14 O -0.54 -7.42 17.48 5.33 0.09 -7.33 16 15 C -0.08 -1.30 1.79 -90.58 -0.16 -1.46 16 16 C -0.13 -2.10 5.22 -26.61 -0.14 -2.24 16 17 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 18 N -0.59 -14.70 2.99 -172.32 -0.52 -15.22 16 19 C -0.25 -6.88 9.58 -15.06 -0.14 -7.02 16 20 H 0.06 1.76 7.89 -52.49 -0.41 1.34 16 21 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 22 N -0.90 -26.19 11.19 55.49 0.62 -25.57 16 23 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 28 C -0.13 -2.45 5.04 -26.61 -0.13 -2.59 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.95 6.40 -51.93 -0.33 0.62 16 31 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.40 3.53 8.39 -40.82 -0.34 3.19 16 33 H 0.13 0.92 7.86 -51.93 -0.41 0.51 16 34 H 0.13 0.89 8.00 -51.93 -0.42 0.47 16 35 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.12 0.15 8.14 -51.93 -0.42 -0.27 16 37 H 0.44 1.39 8.96 -40.82 -0.37 1.02 16 38 H 0.07 1.03 8.14 -51.94 -0.42 0.61 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.05 0.67 7.41 -51.93 -0.38 0.28 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 2.31 6.07 -51.93 -0.31 1.99 16 46 H 0.05 0.89 6.36 -51.93 -0.33 0.56 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 382.49 15.07 5.76 5.76 Total: -1.00 -37.30 382.49 -8.37 -45.67 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -7.05 Total: 0.98 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -1.52 Total: 12.34 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.82 Total: -59.73 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: 0.28 Total: -21.82 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.30 -8.37 -45.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755846258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.839 kcal (2) G-P(sol) polarization free energy of solvation -37.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds