Wall clock time and date at job start Tue Mar 31 2020 22:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47411 * 2 1 4 4 N 1.46503 * 109.47119 * 119.99761 * 2 1 3 5 5 C 1.34772 * 120.00214 * 275.00070 * 4 2 1 6 6 O 1.21291 * 119.99675 * 359.97438 * 5 4 2 7 7 C 1.50695 * 120.00321 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.47223 * 180.02562 * 7 5 4 9 9 C 1.34765 * 124.17435 * 269.72134 * 8 7 5 10 10 O 1.21234 * 127.15809 * 0.02562 * 9 8 7 11 11 C 1.51583 * 105.68549 * 179.97438 * 9 8 7 12 12 N 1.47317 * 103.59100 * 0.32076 * 11 9 8 13 13 C 1.33792 * 124.18160 * 90.02248 * 8 7 5 14 14 O 1.21540 * 123.76793 * 359.96132 * 13 8 7 15 15 C 1.53002 * 109.47000 * 239.99514 * 2 1 3 16 16 C 1.53041 * 109.45892 * 180.02562 * 15 2 1 17 17 C 1.53192 * 109.31528 * 178.60312 * 16 15 2 18 18 N 1.46925 * 108.76193 * 54.65744 * 17 16 15 19 19 C 1.36936 * 120.63030 * 126.40785 * 18 17 16 20 20 H 1.07999 * 120.00001 * 331.82647 * 19 18 17 21 21 C 1.38818 * 120.00038 * 151.82238 * 19 18 17 22 22 N 1.31619 * 119.99776 * 343.07183 * 21 19 18 23 23 Si 1.86794 * 120.00037 * 163.06804 * 21 19 18 24 24 H 1.48503 * 109.46959 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47327 * 120.00417 * 23 21 19 26 26 H 1.48504 * 109.47254 * 240.00404 * 23 21 19 27 27 C 1.46928 * 118.74121 * 306.38249 * 18 17 16 28 28 C 1.53036 * 109.45735 * 59.97832 * 15 2 1 29 29 H 1.09004 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47174 * 60.00434 * 1 2 3 31 31 H 1.08997 * 109.47214 * 300.00314 * 1 2 3 32 32 H 0.97000 * 119.99786 * 94.99943 * 4 2 1 33 33 H 1.09000 * 109.47148 * 299.99597 * 7 5 4 34 34 H 1.08996 * 109.47251 * 59.99609 * 7 5 4 35 35 H 1.09004 * 110.76613 * 241.71591 * 11 9 8 36 36 H 1.08994 * 110.56445 * 118.83118 * 11 9 8 37 37 H 0.97001 * 126.68560 * 179.76808 * 12 11 9 38 38 H 1.08988 * 109.46401 * 299.99746 * 15 2 1 39 39 H 1.09003 * 109.50284 * 298.57161 * 16 15 2 40 40 H 1.09004 * 109.49907 * 58.66426 * 16 15 2 41 41 H 1.08993 * 109.59938 * 294.87075 * 17 16 15 42 42 H 1.08998 * 109.70633 * 174.50614 * 17 16 15 43 43 H 0.97000 * 119.99690 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.58471 * 293.82895 * 27 18 17 45 45 H 1.08994 * 109.70721 * 173.46836 * 27 18 17 46 46 H 1.09001 * 109.49570 * 301.32936 * 28 15 2 47 47 H 1.09002 * 109.50466 * 61.39679 * 28 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8590 1.1587 2.4114 7 6 2.6499 -0.7284 3.5875 8 7 2.6985 0.2128 4.7091 9 6 3.7724 0.9653 5.0199 10 8 4.8398 0.9905 4.4457 11 6 3.3677 1.7747 6.2360 12 7 1.9854 1.3379 6.4981 13 6 1.6842 0.4273 5.5549 14 8 0.6112 -0.1386 5.4802 15 6 2.0400 -0.7214 -1.2492 16 6 3.5704 -0.7218 -1.2486 17 6 4.0773 -1.4750 -2.4825 18 7 3.4748 -0.8771 -3.6817 19 6 4.2607 -0.4517 -4.7193 20 1 5.2719 -0.1223 -4.5310 21 6 3.7578 -0.4439 -6.0131 22 7 2.6780 -1.1381 -6.3036 23 14 4.6135 0.5518 -7.3418 24 1 5.7967 1.2370 -6.7622 25 1 5.0523 -0.3538 -8.4339 26 1 3.6723 1.5635 -7.8858 27 6 2.0130 -0.7449 -3.7469 28 6 1.5292 -0.0001 -2.4986 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8899 32 1 2.2490 -1.6317 1.1527 33 1 1.9777 -1.5507 3.8326 34 1 3.6492 -1.1202 3.3979 35 1 3.3976 2.8421 6.0173 36 1 4.0113 1.5399 7.0837 37 1 1.4055 1.6468 7.2117 38 1 1.6766 -1.7489 -1.2490 39 1 3.9346 0.3053 -1.2740 40 1 3.9337 -1.2148 -0.3469 41 1 3.7904 -2.5242 -2.4138 42 1 5.1629 -1.3961 -2.5409 43 1 2.3263 -1.1323 -7.2076 44 1 1.5577 -1.7346 -3.7812 45 1 1.7341 -0.1833 -4.6385 46 1 0.4394 0.0205 -2.4868 47 1 1.9122 1.0203 -2.5119 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755846258.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:22 Heat of formation + Delta-G solvation = -85.102113 kcal Electronic energy + Delta-G solvation = -30035.316881 eV Core-core repulsion = 25832.435453 eV Total energy + Delta-G solvation = -4202.881428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.38657 -41.00869 -39.68163 -39.41362 -37.20555 -36.88082 -35.62781 -34.54659 -32.99958 -31.44980 -30.86478 -29.43878 -28.35720 -27.16085 -24.80560 -23.94690 -23.68265 -22.81635 -21.69352 -21.35518 -20.65677 -19.13254 -18.96179 -18.56171 -17.87101 -17.44842 -17.33436 -16.81388 -16.41232 -16.25574 -16.09314 -15.79347 -15.31982 -15.29348 -15.08465 -14.96411 -14.89801 -14.82216 -14.37114 -14.09638 -14.02531 -13.67162 -13.41858 -13.26369 -12.91997 -12.73986 -12.64759 -12.43265 -12.17939 -12.15646 -12.00315 -11.80023 -11.70491 -11.50609 -11.39012 -11.21041 -11.09411 -10.69199 -10.53869 -10.40322 -10.12194 -8.66215 -7.87652 -5.32232 0.61205 1.03433 1.44106 1.46471 1.49132 1.56599 1.81125 2.22855 2.31934 2.50584 3.04145 3.26394 3.59872 3.69419 3.75429 3.76966 3.95403 4.06150 4.15922 4.30219 4.31550 4.33613 4.39337 4.46420 4.55705 4.58918 4.66695 4.73754 4.79152 4.89576 4.98240 5.03368 5.11062 5.17833 5.28348 5.36143 5.43264 5.48908 5.55821 5.66135 5.80195 5.82407 5.97119 6.32497 6.40087 6.48134 7.07220 7.15070 7.16049 7.88436 8.38740 9.18379 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023589 B = 0.002315 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.716340 B =12094.210476 C =12706.149089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.060 0.940 4 N -0.703 5.703 5 C 0.497 3.503 6 O -0.579 6.579 7 C 0.098 3.902 8 N -0.568 5.568 9 C 0.516 3.484 10 O -0.501 6.501 11 C 0.075 3.925 12 N -0.708 5.708 13 C 0.699 3.301 14 O -0.584 6.584 15 C -0.072 4.072 16 C -0.113 4.113 17 C 0.141 3.859 18 N -0.613 5.613 19 C -0.261 4.261 20 H 0.062 0.938 21 C -0.051 4.051 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.269 1.269 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.178 3.822 28 C -0.122 4.122 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.418 0.582 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.167 0.833 37 H 0.455 0.545 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.084 0.916 41 H 0.022 0.978 42 H 0.048 0.952 43 H 0.250 0.750 44 H 0.002 0.998 45 H 0.050 0.950 46 H 0.075 0.925 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 1.672 29.570 29.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.053 3.947 3 H 0.078 0.922 4 N -0.355 5.355 5 C 0.283 3.717 6 O -0.459 6.459 7 C -0.027 4.027 8 N -0.313 5.313 9 C 0.306 3.694 10 O -0.372 6.372 11 C -0.051 4.051 12 N -0.373 5.373 13 C 0.400 3.600 14 O -0.460 6.460 15 C -0.091 4.091 16 C -0.152 4.152 17 C 0.016 3.984 18 N -0.336 5.336 19 C -0.391 4.391 20 H 0.079 0.921 21 C -0.246 4.246 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.194 1.194 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.052 3.948 28 C -0.161 4.161 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.255 0.745 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.166 0.834 36 H 0.184 0.816 37 H 0.302 0.698 38 H 0.101 0.899 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.231 2.156 29.050 29.156 hybrid contribution 0.086 0.174 -1.253 1.268 sum -1.145 2.330 27.797 27.918 Atomic orbital electron populations 1.22133 0.94529 1.02930 1.01812 1.20839 0.94305 0.96124 0.83429 0.92191 1.45866 1.66238 1.14825 1.08601 1.21278 0.77341 0.87351 0.85744 1.90699 1.51780 1.17860 1.85524 1.21635 1.07451 0.91576 0.82031 1.45970 1.15792 1.41182 1.28382 1.21671 0.82525 0.79173 0.86076 1.90837 1.24086 1.64957 1.57349 1.22709 0.83651 1.01928 0.96779 1.45333 1.16937 1.42809 1.32258 1.15987 0.82779 0.80981 0.80268 1.90995 1.24070 1.55103 1.75849 1.21187 0.95583 0.99833 0.92489 1.21894 0.95130 1.00051 0.98121 1.21055 0.96338 0.94433 0.86572 1.44341 1.02499 1.70557 1.16238 1.19507 0.97442 1.35556 0.86630 0.92078 1.25753 0.99408 1.00393 0.99048 1.70175 1.26035 1.42408 1.19306 0.85271 0.78103 0.78267 0.79208 1.19398 1.21744 1.21679 1.20578 0.82883 0.95912 0.95431 1.22068 1.00115 0.98754 0.95183 0.90895 0.91031 0.93796 0.74475 0.83500 0.83245 0.83424 0.81557 0.69786 0.89855 0.94191 0.89800 0.96016 0.93372 0.94118 0.98014 0.93182 0.90641 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.13 71.98 0.66 -3.22 16 2 C 0.16 4.19 2.16 44.99 0.10 4.29 16 3 H 0.06 1.95 7.58 -2.39 -0.02 1.93 16 4 N -0.70 -14.84 4.36 -442.53 -1.93 -16.77 16 5 C 0.50 12.06 7.86 87.66 0.69 12.75 16 6 O -0.58 -19.35 16.09 -3.07 -0.05 -19.40 16 7 C 0.10 1.62 6.18 85.63 0.53 2.15 16 8 N -0.57 -10.35 2.09 -777.23 -1.63 -11.97 16 9 C 0.52 8.48 8.31 87.94 0.73 9.22 16 10 O -0.50 -11.66 17.75 -2.89 -0.05 -11.71 16 11 C 0.08 0.41 7.97 85.76 0.68 1.09 16 12 N -0.71 -6.30 6.58 -480.31 -3.16 -9.46 16 13 C 0.70 13.25 8.62 179.44 1.55 14.80 16 14 O -0.58 -15.59 17.48 -3.84 -0.07 -15.66 16 15 C -0.07 -2.12 1.79 -10.77 -0.02 -2.14 16 16 C -0.11 -3.60 5.22 30.67 0.16 -3.44 16 17 C 0.14 5.69 6.52 86.36 0.56 6.26 16 18 N -0.61 -30.80 2.99 -699.10 -2.09 -32.90 16 19 C -0.26 -14.60 9.58 84.04 0.81 -13.79 16 20 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 21 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 22 N -0.93 -55.50 11.19 21.65 0.24 -55.25 16 23 Si 0.96 45.63 29.59 68.60 2.03 47.66 16 24 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 25 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 C 0.18 8.47 5.30 86.36 0.46 8.93 16 28 C -0.12 -4.44 5.04 30.67 0.15 -4.28 16 29 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.07 1.78 6.40 -2.39 -0.02 1.77 16 31 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.42 6.02 8.39 -92.71 -0.78 5.24 16 33 H 0.15 1.80 7.86 -2.39 -0.02 1.78 16 34 H 0.15 1.73 8.00 -2.39 -0.02 1.71 16 35 H 0.15 0.30 8.14 -2.38 -0.02 0.28 16 36 H 0.17 -0.37 8.14 -2.39 -0.02 -0.39 16 37 H 0.45 1.62 8.96 -92.71 -0.83 0.79 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.08 2.09 7.41 -2.38 -0.02 2.07 16 41 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 43 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.05 2.75 6.07 -2.39 -0.01 2.73 16 46 H 0.08 2.42 6.36 -2.39 -0.02 2.40 16 47 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -84.82 382.49 0.17 -84.65 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -0.59 Total: 10.66 kcal Atomic # 6 Polarization: 22.68 SS G_CDS: 7.47 Total: 30.15 kcal Atomic # 7 Polarization: -117.79 SS G_CDS: -8.57 Total: -126.36 kcal Atomic # 8 Polarization: -46.60 SS G_CDS: -0.17 Total: -46.76 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -84.82 0.17 -84.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755846258.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.454 kcal (2) G-P(sol) polarization free energy of solvation -84.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds