Wall clock time and date at job start Tue Mar 31 2020 21:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47703 * 2 1 4 4 C 1.46502 * 119.99690 * 269.99813 * 3 2 1 5 5 C 1.50697 * 109.47041 * 269.99812 * 4 3 2 6 6 H 1.08000 * 120.00276 * 359.97438 * 5 4 3 7 7 C 1.37880 * 119.99498 * 180.02562 * 5 4 3 8 8 N 1.31516 * 120.00405 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99569 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47265 * 89.99772 * 9 7 5 11 11 H 1.48501 * 109.46713 * 209.99799 * 9 7 5 12 12 H 1.48498 * 109.47011 * 329.99602 * 9 7 5 13 13 C 1.34775 * 120.00238 * 89.99270 * 3 2 1 14 14 O 1.21280 * 120.00034 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99911 * 0.02562 * 13 3 2 16 16 N 1.46904 * 109.46807 * 179.97438 * 15 13 3 17 17 C 1.46898 * 110.99459 * 179.97438 * 16 15 13 18 18 C 1.53004 * 109.46947 * 179.97438 * 17 16 15 19 19 N 1.46499 * 109.47198 * 180.02562 * 18 17 16 20 20 C 1.34777 * 119.99665 * 180.27868 * 19 18 17 21 21 O 1.21603 * 120.00257 * 359.72088 * 20 19 18 22 22 C 1.47402 * 119.99679 * 179.72400 * 20 19 18 23 23 C 1.37362 * 128.56305 * 359.67301 * 22 20 19 24 24 O 1.33499 * 106.33709 * 179.91214 * 23 22 20 25 25 N 1.20656 * 113.15795 * 0.38708 * 24 23 22 26 26 C 1.30016 * 112.30041 * 359.75713 * 25 24 23 27 27 C 1.50703 * 127.33332 * 179.97438 * 26 25 24 28 28 H 1.09002 * 109.46638 * 60.00039 * 1 2 3 29 29 H 1.08990 * 109.47579 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47006 * 300.00807 * 1 2 3 31 31 H 1.09002 * 109.47447 * 239.99032 * 2 1 3 32 32 H 1.09007 * 109.47076 * 120.00117 * 2 1 3 33 33 H 1.09006 * 109.46889 * 29.99700 * 4 3 2 34 34 H 1.09000 * 109.47133 * 149.99097 * 4 3 2 35 35 H 0.97002 * 119.99949 * 179.97438 * 8 7 5 36 36 H 1.08992 * 109.47001 * 59.99355 * 15 13 3 37 37 H 1.09001 * 109.46613 * 299.99743 * 15 13 3 38 38 H 1.00894 * 110.99641 * 303.95280 * 16 15 13 39 39 H 1.08995 * 109.47478 * 60.00426 * 17 16 15 40 40 H 1.09006 * 109.47065 * 299.99823 * 17 16 15 41 41 H 1.09009 * 109.46730 * 59.99875 * 18 17 16 42 42 H 1.08998 * 109.46846 * 300.00419 * 18 17 16 43 43 H 0.97001 * 119.99790 * 359.97438 * 19 18 17 44 44 H 1.07993 * 126.82986 * 359.97438 * 23 22 20 45 45 H 1.09002 * 109.47085 * 270.00194 * 27 26 25 46 46 H 1.09001 * 109.46971 * 30.00250 * 27 26 25 47 47 H 1.09004 * 109.47043 * 150.00089 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2627 2.0717 -1.2688 5 6 3.6860 1.8347 -1.7037 6 1 4.3430 1.2306 -1.0957 7 6 4.1496 2.3902 -2.8775 8 7 3.3496 3.1263 -3.6177 9 14 5.9136 2.0959 -3.4170 10 1 5.9762 0.8753 -4.2605 11 1 6.3932 3.2634 -4.1994 12 1 6.7737 1.9150 -2.2201 13 6 2.2430 2.0166 1.1672 14 8 2.6470 3.1601 1.1671 15 6 1.9922 1.3061 2.4723 16 7 2.3108 2.2060 3.5888 17 6 2.0772 1.5459 4.8801 18 6 2.4199 2.5118 6.0161 19 7 2.1874 1.8533 7.3040 20 6 2.4179 2.5194 8.4527 21 8 2.8237 3.6653 8.4202 22 6 2.1783 1.8589 9.7485 23 6 1.7203 0.5864 9.9892 24 8 1.6710 0.4498 11.3162 25 7 2.0199 1.4414 11.9086 26 6 2.3644 2.4019 11.1028 27 6 2.8503 3.7785 11.4769 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.5819 1.6875 -2.0284 34 1 2.0957 3.1409 -1.1386 35 1 3.6760 3.5173 -4.4432 36 1 2.6225 0.4188 2.5299 37 1 0.9443 1.0117 2.5301 38 1 3.2591 2.5440 3.5214 39 1 2.7076 0.6598 4.9546 40 1 1.0296 1.2539 4.9546 41 1 1.7897 3.3982 5.9418 42 1 3.4675 2.8035 5.9414 43 1 1.8634 0.9394 7.3298 44 1 1.4541 -0.1561 9.2516 45 1 1.9988 4.4537 11.5621 46 1 3.3741 3.7320 12.4316 47 1 3.5294 4.1456 10.7074 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133227621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:22 Heat of formation + Delta-G solvation = -7.697066 kcal Electronic energy + Delta-G solvation = -28025.662098 eV Core-core repulsion = 23826.137205 eV Total energy + Delta-G solvation = -4199.524893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.40312 -39.98131 -39.17218 -36.69459 -35.32527 -34.91909 -34.57342 -32.84257 -32.60482 -30.18486 -29.87660 -29.05784 -27.48005 -25.77001 -24.53105 -23.05310 -22.54681 -22.17479 -21.78033 -20.96440 -18.87176 -18.37354 -18.21468 -17.05222 -16.59137 -16.49765 -16.44975 -16.21746 -15.66446 -15.39646 -15.13278 -14.45849 -14.29596 -14.10895 -13.79741 -13.68744 -13.54802 -13.43842 -13.31535 -13.29050 -12.89283 -12.47086 -12.28607 -12.01798 -11.85495 -11.76800 -11.70190 -11.48971 -11.19695 -10.93249 -10.77747 -10.56853 -10.53820 -10.38658 -10.28207 -10.14871 -9.65404 -9.52123 -8.98765 -8.48554 -8.45152 -7.68078 -6.05834 -4.10770 0.53427 1.32593 2.32584 2.70072 2.76238 3.28000 3.34755 3.37115 3.42256 3.54205 3.72058 3.79577 4.28878 4.32154 4.38111 4.44049 4.63154 4.78802 4.82952 5.03451 5.11395 5.12878 5.16490 5.20588 5.28636 5.30590 5.38449 5.43844 5.58153 5.60959 5.66575 5.74394 5.76196 5.90288 5.97902 6.19295 6.43991 6.69123 6.95457 7.08178 7.24073 7.44513 7.53330 7.68335 7.73222 7.90561 8.21918 8.40720 8.88613 9.08669 9.54389 11.02123 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020016 B = 0.001676 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.578248 B =16698.773603 C =17435.128417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.275 1.275 13 C 0.503 3.497 14 O -0.527 6.527 15 C 0.043 3.957 16 N -0.669 5.669 17 C 0.050 3.950 18 C 0.120 3.880 19 N -0.722 5.722 20 C 0.595 3.405 21 O -0.521 6.521 22 C -0.254 4.254 23 C -0.005 4.005 24 O 0.098 5.902 25 N -0.359 5.359 26 C 0.072 3.928 27 C -0.080 4.080 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.356 0.644 39 H 0.036 0.964 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.398 0.602 44 H 0.226 0.774 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.355 -10.441 25.679 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.200 1.200 13 C 0.289 3.711 14 O -0.403 6.403 15 C -0.089 4.089 16 N -0.303 5.303 17 C -0.080 4.080 18 C -0.003 4.003 19 N -0.374 5.374 20 C 0.381 3.619 21 O -0.397 6.397 22 C -0.261 4.261 23 C -0.088 4.088 24 O 0.039 5.961 25 N -0.067 5.067 26 C -0.091 4.091 27 C -0.137 4.137 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.114 0.886 38 H 0.176 0.824 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.232 0.768 44 H 0.242 0.758 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.504 -8.697 26.743 28.864 hybrid contribution 1.526 -1.247 -1.329 2.377 sum -4.978 -9.944 25.413 27.740 Atomic orbital electron populations 1.22225 0.96785 1.01344 1.02431 1.21407 0.93520 0.84306 1.02544 1.48252 1.63982 1.13184 1.07705 1.19263 0.96188 0.93712 0.78057 1.21422 0.96945 1.31930 1.06264 0.92572 1.24941 0.97829 0.94922 0.96437 1.69931 1.35669 1.33323 1.14321 0.86504 0.84697 0.77673 0.78566 1.20685 1.21067 1.19961 1.20130 0.79054 0.87109 0.84851 1.90690 1.45061 1.17668 1.86884 1.21903 1.02389 0.94210 0.90420 1.59952 1.33179 1.37584 0.99565 1.22069 1.01734 0.95021 0.89149 1.21338 1.02629 0.96320 0.80019 1.45683 1.68620 1.17360 1.05729 1.16777 0.77805 0.85483 0.81862 1.90835 1.44980 1.16895 1.87032 1.22359 1.12691 0.95726 0.95336 1.26432 0.97853 0.97796 0.86728 1.84590 1.62628 1.32025 1.16839 1.73713 1.17122 0.95107 1.20757 1.24920 0.98765 0.98095 0.87322 1.20308 1.02364 0.87829 1.03191 0.91969 0.92233 0.93044 0.89955 0.91979 0.95043 0.93839 0.92705 0.92782 0.88633 0.82408 0.94635 0.90272 0.89702 0.90844 0.76798 0.75753 0.89583 0.90309 0.88468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 37.16 0.38 -1.72 16 2 C 0.11 1.58 5.93 -4.04 -0.02 1.56 16 3 N -0.60 -12.07 2.46 -175.05 -0.43 -12.50 16 4 C 0.25 6.33 5.16 -5.19 -0.03 6.30 16 5 C -0.53 -14.69 9.39 -34.44 -0.32 -15.02 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.63 16 9 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.50 9.95 7.71 -10.98 -0.08 9.86 16 14 O -0.53 -12.96 15.78 5.56 0.09 -12.87 16 15 C 0.04 0.58 4.72 -4.97 -0.02 0.55 16 16 N -0.67 -8.46 6.13 -115.05 -0.70 -9.16 16 17 C 0.05 0.41 5.80 -3.82 -0.02 0.39 16 18 C 0.12 1.05 5.93 -4.04 -0.02 1.03 16 19 N -0.72 -4.85 5.55 -61.39 -0.34 -5.20 16 20 C 0.59 5.62 7.81 -12.53 -0.10 5.53 16 21 O -0.52 -6.95 15.70 5.27 0.08 -6.87 16 22 C -0.25 -1.98 6.47 -102.89 -0.67 -2.65 16 23 C -0.01 -0.02 11.85 30.41 0.36 0.34 16 24 O 0.10 0.70 11.06 18.64 0.21 0.90 16 25 N -0.36 -3.35 12.01 34.78 0.42 -2.93 16 26 C 0.07 0.65 7.58 -79.77 -0.60 0.04 16 27 C -0.08 -0.61 10.14 36.01 0.37 -0.24 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 31 H 0.08 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.06 0.74 6.44 -51.93 -0.33 0.40 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 35 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 36 H 0.05 0.62 7.40 -51.93 -0.38 0.24 16 37 H 0.10 1.09 7.19 -51.93 -0.37 0.71 16 38 H 0.36 4.88 8.43 -39.29 -0.33 4.55 16 39 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.40 1.22 7.66 -40.82 -0.31 0.91 16 44 H 0.23 -0.18 7.68 -52.49 -0.40 -0.58 16 45 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.10 0.83 7.11 -51.93 -0.37 0.46 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -37.16 400.98 -6.84 -44.01 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.03 Total: -0.02 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: -0.89 Total: 7.59 kcal Atomic # 7 Polarization: -55.09 SS G_CDS: -0.32 Total: -55.41 kcal Atomic # 8 Polarization: -19.21 SS G_CDS: 0.38 Total: -18.84 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.16 -6.84 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133227621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.308 kcal (2) G-P(sol) polarization free energy of solvation -37.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds