Wall clock time and date at job start Tue Mar 31 2020 20:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46921 * 2 1 4 4 C 1.50702 * 109.46945 * 239.99761 * 2 1 3 5 5 O 1.21281 * 120.00051 * 239.99842 * 4 2 1 6 6 N 1.34779 * 119.99840 * 60.00163 * 4 2 1 7 7 C 1.46494 * 119.99921 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47283 * 179.97438 * 7 6 4 9 9 H 1.08999 * 109.47269 * 305.00317 * 8 7 6 10 10 O 1.42903 * 109.46459 * 65.00211 * 8 7 6 11 11 C 1.53001 * 109.47376 * 185.00021 * 8 7 6 12 12 N 1.46898 * 109.46893 * 180.02562 * 11 8 7 13 13 C 1.46900 * 110.99589 * 180.02562 * 12 11 8 14 14 C 1.50705 * 109.47217 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99619 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00394 * 179.97438 * 14 13 12 17 17 C 1.37097 * 120.00100 * 180.02562 * 16 14 13 18 18 H 1.07996 * 119.99991 * 0.02562 * 17 16 14 19 19 C 1.38953 * 119.99700 * 179.97438 * 17 16 14 20 20 N 1.31405 * 120.00117 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99605 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47449 * 60.00044 * 21 19 17 23 23 H 1.48506 * 109.47113 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47294 * 300.00045 * 21 19 17 25 25 N 1.46505 * 109.47140 * 120.00032 * 2 1 3 26 26 C 1.36339 * 125.63794 * 59.69562 * 25 2 1 27 27 C 1.34850 * 108.22005 * 179.82845 * 26 25 2 28 28 C 1.40889 * 107.41541 * 0.42556 * 27 26 25 29 29 C 1.34851 * 107.41729 * 359.73199 * 28 27 26 30 30 H 1.08999 * 109.47534 * 60.00018 * 1 2 3 31 31 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46886 * 299.99878 * 1 2 3 33 33 H 0.96999 * 119.99691 * 0.02562 * 6 4 2 34 34 H 1.09005 * 109.47040 * 60.00167 * 7 6 4 35 35 H 1.08999 * 109.47079 * 299.99869 * 7 6 4 36 36 H 0.96700 * 114.00311 * 60.00313 * 10 8 7 37 37 H 1.08999 * 109.47164 * 300.00361 * 11 8 7 38 38 H 1.08997 * 109.47124 * 60.00063 * 11 8 7 39 39 H 1.00893 * 111.00468 * 56.04908 * 12 11 8 40 40 H 1.09002 * 109.47169 * 299.99734 * 13 12 11 41 41 H 1.09003 * 109.47314 * 59.99718 * 13 12 11 42 42 H 0.97006 * 119.99935 * 359.97438 * 16 14 13 43 43 H 0.97003 * 119.99893 * 179.97438 * 20 19 17 44 44 H 1.08003 * 125.88761 * 359.95494 * 26 25 2 45 45 H 1.08002 * 126.29082 * 180.15350 * 27 26 25 46 46 H 1.07996 * 126.29550 * 179.73622 * 28 27 26 47 47 H 1.08007 * 125.89397 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1192 6 7 1.7067 -0.2500 -2.4546 7 6 2.1954 -0.9403 -3.6507 8 6 1.6848 -0.2195 -4.9000 9 1 0.5984 -0.1420 -4.8563 10 8 2.2537 1.0900 -4.9602 11 6 2.0900 -1.0095 -6.1461 12 7 1.6002 -0.3170 -7.3455 13 6 1.9711 -1.0488 -8.5640 14 6 1.4524 -0.3104 -9.7710 15 8 0.8340 0.7235 -9.6299 16 7 1.6754 -0.7988 -11.0072 17 6 1.2039 -0.1267 -12.1051 18 1 0.6541 0.7943 -11.9795 19 6 1.4344 -0.6300 -13.3796 20 7 2.1047 -1.7498 -13.5325 21 14 0.7913 0.2854 -14.8756 22 1 1.3830 1.6468 -14.9151 23 1 1.1668 -0.4540 -16.1075 24 1 -0.6877 0.3907 -14.7935 25 7 2.0184 -0.6906 1.1962 26 6 1.7560 -1.9868 1.5279 27 6 2.3801 -2.2587 2.6920 28 6 3.0442 -1.0846 3.0987 29 6 2.8056 -0.1417 2.1646 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.1493 0.5389 -2.5435 34 1 1.8324 -1.9681 -3.6508 35 1 3.2854 -0.9399 -3.6506 36 1 3.2198 1.0976 -5.0012 37 1 3.1764 -1.0869 -6.1898 38 1 1.6561 -2.0083 -6.1001 39 1 1.9374 0.6334 -7.3774 40 1 3.0566 -1.1273 -8.6245 41 1 1.5357 -2.0477 -8.5348 42 1 2.1703 -1.6254 -11.1201 43 1 2.2653 -2.1014 -14.4222 44 1 1.1540 -2.6773 0.9558 45 1 2.3688 -3.2018 3.2182 46 1 3.6357 -0.9622 3.9939 47 1 3.1740 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268302413.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:12 Heat of formation + Delta-G solvation = -65.782736 kcal Electronic energy + Delta-G solvation = -27902.945821 eV Core-core repulsion = 23700.902144 eV Total energy + Delta-G solvation = -4202.043677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.71098 -39.99287 -38.62291 -37.95071 -35.11320 -34.81963 -34.49116 -33.81785 -31.27720 -30.64429 -29.61376 -28.94450 -27.38313 -25.46718 -24.49892 -23.23618 -22.04540 -21.33461 -20.71342 -19.95880 -19.29856 -18.34356 -17.93893 -17.41535 -17.09131 -16.67343 -15.89788 -15.81634 -15.59710 -15.21867 -14.80389 -14.54688 -14.41113 -14.29282 -13.94997 -13.85588 -13.78036 -13.49175 -13.15844 -13.01494 -12.93801 -12.68727 -12.55436 -12.46460 -12.32797 -12.08628 -11.88044 -11.64242 -11.54313 -11.26194 -11.03393 -10.60805 -10.46173 -10.29760 -10.22674 -9.60950 -9.52648 -8.87097 -8.51427 -8.33588 -8.14620 -7.99122 -6.44218 -3.85251 1.90207 2.02848 2.37398 2.79922 2.88632 3.18353 3.24289 3.28593 3.82440 3.88021 3.97745 4.08737 4.18484 4.18926 4.22460 4.62552 4.66742 4.70168 4.80663 4.92483 4.94254 5.02237 5.03895 5.17699 5.23016 5.27969 5.33612 5.41017 5.43411 5.49299 5.67683 5.79189 5.86039 5.90945 6.08308 6.09399 6.21344 6.77943 6.86602 6.99440 7.07311 7.11546 7.28488 7.52590 7.60296 7.64141 8.03207 8.58292 9.15079 9.51094 10.02515 10.73369 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.043852 B = 0.001427 C = 0.001408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.359122 B =19612.403610 C =19887.472494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.116 3.884 3 H 0.124 0.876 4 C 0.500 3.500 5 O -0.519 6.519 6 N -0.717 5.717 7 C 0.089 3.911 8 C 0.099 3.901 9 H 0.117 0.883 10 O -0.553 6.553 11 C 0.030 3.970 12 N -0.663 5.663 13 C 0.050 3.950 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.301 4.301 18 H 0.103 0.897 19 C 0.023 3.977 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.273 1.273 25 N -0.434 5.434 26 C 0.016 3.984 27 C -0.208 4.208 28 C -0.196 4.196 29 C -0.021 4.021 30 H 0.083 0.917 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.407 0.593 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.374 0.626 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.356 0.644 40 H 0.043 0.957 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.154 0.846 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.984 1.119 29.031 29.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.142 0.858 4 C 0.284 3.716 5 O -0.393 6.393 6 N -0.370 5.370 7 C -0.036 4.036 8 C 0.039 3.961 9 H 0.134 0.866 10 O -0.358 6.358 11 C -0.100 4.100 12 N -0.297 5.297 13 C -0.082 4.082 14 C 0.225 3.775 15 O -0.466 6.466 16 N -0.199 5.199 17 C -0.431 4.431 18 H 0.121 0.879 19 C -0.179 4.179 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 N -0.111 5.111 26 C -0.114 4.114 27 C -0.233 4.233 28 C -0.221 4.221 29 C -0.149 4.149 30 H 0.101 0.899 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.242 0.758 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.221 0.779 37 H 0.050 0.950 38 H 0.101 0.899 39 H 0.177 0.823 40 H 0.061 0.939 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.172 0.828 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -0.236 1.061 28.755 28.775 hybrid contribution 1.412 0.083 -1.101 1.793 sum 1.176 1.144 27.653 27.702 Atomic orbital electron populations 1.22152 0.90994 1.04311 1.04325 1.21248 0.96951 0.97507 0.83343 0.85830 1.20650 0.80975 0.85270 0.84728 1.90800 1.36671 1.25536 1.86329 1.45814 1.53877 1.32363 1.04965 1.22115 1.00007 0.97280 0.84156 1.22230 0.99922 0.82769 0.91162 0.86553 1.86654 1.25367 1.27257 1.96540 1.22526 0.97760 0.98853 0.90893 1.59965 1.63847 1.06361 0.99529 1.21688 0.98124 0.98347 0.90074 1.19774 0.85963 0.87753 0.84025 1.90532 1.44877 1.25507 1.85726 1.41854 1.49499 1.24171 1.04415 1.19665 1.32532 1.07322 0.83566 0.87943 1.25262 0.97080 0.96381 0.99137 1.69601 1.40313 1.20036 1.24335 0.85909 0.79306 0.79139 0.79811 1.19902 1.20961 1.19866 1.43696 1.40015 1.10644 1.16749 1.21642 1.05613 0.85607 0.98497 1.20856 1.04832 0.99303 0.98273 1.20860 1.06313 0.93818 1.01109 1.21776 1.01683 0.99871 0.91582 0.89866 0.90983 0.90243 0.75757 0.90081 0.90919 0.77859 0.94963 0.89863 0.82294 0.93889 0.89598 0.77462 0.91795 0.82824 0.84879 0.84833 0.82373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.13 37.16 0.34 -0.32 16 2 C 0.12 0.72 3.36 -69.08 -0.23 0.48 16 3 H 0.12 0.48 8.06 -51.93 -0.42 0.06 16 4 C 0.50 4.28 7.11 -10.98 -0.08 4.20 16 5 O -0.52 -6.74 15.47 5.56 0.09 -6.66 16 6 N -0.72 -4.69 5.40 -60.29 -0.33 -5.02 16 7 C 0.09 0.66 5.31 -4.04 -0.02 0.63 16 8 C 0.10 0.81 3.27 -26.73 -0.09 0.73 16 9 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 10 O -0.55 -4.86 12.62 -35.23 -0.44 -5.31 16 11 C 0.03 0.31 5.39 -3.82 -0.02 0.29 16 12 N -0.66 -10.01 6.12 -115.06 -0.70 -10.71 16 13 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 14 C 0.44 10.25 7.82 -10.99 -0.09 10.16 16 15 O -0.58 -15.72 15.78 5.55 0.09 -15.64 16 16 N -0.56 -14.13 5.29 -10.96 -0.06 -14.19 16 17 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 18 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 19 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 20 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 21 Si 0.93 20.90 29.55 -169.99 -5.02 15.87 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 N -0.43 -3.79 2.40 -111.25 -0.27 -4.06 16 26 C 0.02 0.16 9.57 -16.75 -0.16 0.00 16 27 C -0.21 -2.07 10.86 -39.78 -0.43 -2.50 16 28 C -0.20 -1.83 10.86 -39.78 -0.43 -2.26 16 29 C -0.02 -0.18 11.39 -16.75 -0.19 -0.37 16 30 H 0.08 0.20 7.56 -51.93 -0.39 -0.19 16 31 H 0.07 0.36 7.91 -51.93 -0.41 -0.05 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.41 1.89 7.89 -40.82 -0.32 1.57 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.37 2.26 9.05 45.56 0.41 2.68 16 37 H 0.03 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.36 5.75 7.82 -39.30 -0.31 5.44 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 47 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -35.92 401.45 -7.89 -43.81 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -6.35 Total: 15.58 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.67 Total: 3.87 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.63 Total: -57.58 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.27 Total: -27.60 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.92 -7.89 -43.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268302413.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.973 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds