Wall clock time and date at job start Tue Mar 31 2020 20:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30014 * 127.33307 * 300.02295 * 4 2 1 6 6 O 1.20657 * 112.30330 * 179.97438 * 5 4 2 7 7 C 1.33492 * 113.15467 * 359.97438 * 6 5 4 8 8 C 1.37366 * 106.34238 * 359.74616 * 7 6 5 9 9 C 1.47391 * 128.56367 * 180.23407 * 8 7 6 10 10 O 1.21613 * 119.99928 * 180.16345 * 9 8 7 11 11 N 1.34778 * 120.00393 * 0.16270 * 9 8 7 12 12 C 1.46503 * 120.00074 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.46775 * 179.97438 * 12 11 9 14 14 H 1.08993 * 109.47471 * 64.99888 * 13 12 11 15 15 C 1.53002 * 109.46911 * 184.99897 * 13 12 11 16 16 N 1.46903 * 109.47233 * 304.99902 * 13 12 11 17 17 C 1.46898 * 110.99822 * 155.00591 * 16 13 12 18 18 C 1.50707 * 109.46803 * 180.02562 * 17 16 13 19 19 O 1.21289 * 120.00144 * 359.97438 * 18 17 16 20 20 N 1.34776 * 119.99776 * 179.97438 * 18 17 16 21 21 C 1.37091 * 119.99949 * 179.97438 * 20 18 17 22 22 H 1.08004 * 120.00065 * 0.02562 * 21 20 18 23 23 C 1.38955 * 120.00144 * 179.97438 * 21 20 18 24 24 N 1.31409 * 119.99685 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00046 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47055 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46744 * 120.00111 * 25 23 21 28 28 H 1.48501 * 109.47310 * 240.00327 * 25 23 21 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 1.07999 * 126.82778 * 179.97438 * 7 6 5 37 37 H 0.97001 * 119.99587 * 359.97438 * 11 9 8 38 38 H 1.08994 * 109.47289 * 299.99756 * 12 11 9 39 39 H 1.08999 * 109.46797 * 60.00070 * 12 11 9 40 40 H 1.09000 * 109.47175 * 179.97438 * 15 13 12 41 41 H 1.09003 * 109.47268 * 300.00335 * 15 13 12 42 42 H 1.09002 * 109.46950 * 60.00006 * 15 13 12 43 43 H 1.00903 * 110.99914 * 278.95349 * 16 13 12 44 44 H 1.09006 * 109.46775 * 299.99330 * 17 16 13 45 45 H 1.08996 * 109.47673 * 59.99988 * 17 16 13 46 46 H 0.97002 * 119.99794 * 0.02562 * 20 18 17 47 47 H 0.97004 * 119.99965 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.8075 -0.3933 2.4711 6 8 2.3432 -1.1515 3.2419 7 6 3.0287 -2.1217 2.6329 8 6 2.8754 -1.9148 1.2835 9 6 3.4235 -2.7028 0.1651 10 8 3.1895 -2.3744 -0.9823 11 7 4.1839 -3.7874 0.4138 12 6 4.7291 -4.5704 -0.6980 13 6 5.5493 -5.7379 -0.1456 14 1 4.8924 -6.4207 0.3931 15 6 6.2205 -6.4818 -1.3019 16 7 6.5778 -5.2243 0.7690 17 6 6.9759 -6.2497 1.7427 18 6 8.0293 -5.6874 2.6620 19 8 8.4113 -4.5450 2.5198 20 7 8.5470 -6.4539 3.6423 21 6 9.5056 -5.9425 4.4783 22 1 9.8458 -4.9253 4.3517 23 6 10.0390 -6.7326 5.4893 24 7 9.6248 -7.9701 5.6437 25 14 11.3458 -6.0360 6.6280 26 1 11.6366 -4.6306 6.2466 27 1 10.8544 -6.0768 8.0288 28 1 12.5848 -6.8467 6.5142 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 3.5890 -2.9140 3.1068 37 1 4.3709 -4.0492 1.3289 38 1 3.9111 -4.9563 -1.3062 39 1 5.3689 -3.9350 -1.3104 40 1 6.8052 -7.3133 -0.9083 41 1 5.4574 -6.8628 -1.9805 42 1 6.8775 -5.7989 -1.8406 43 1 7.3774 -4.8812 0.2580 44 1 6.1072 -6.5517 2.3278 45 1 7.3776 -7.1150 1.2155 46 1 8.2418 -7.3676 3.7558 47 1 9.9974 -8.5218 6.3493 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567022607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:16 Heat of formation + Delta-G solvation = -26.658376 kcal Electronic energy + Delta-G solvation = -28939.711263 eV Core-core repulsion = 24739.364146 eV Total energy + Delta-G solvation = -4200.347117 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.04557 -39.69572 -38.49893 -37.05854 -36.38322 -34.28335 -33.88169 -32.73129 -31.78747 -31.34768 -30.68789 -27.38814 -26.95871 -26.37101 -24.39542 -23.86533 -23.78657 -21.16169 -20.72641 -20.04795 -19.39485 -18.33151 -17.96338 -17.79711 -16.70683 -16.38223 -16.01379 -15.64407 -15.19821 -14.99220 -14.87563 -14.58241 -14.55436 -14.11242 -13.93347 -13.57265 -13.51072 -13.33796 -13.11990 -12.70773 -12.61696 -12.44954 -12.26457 -11.95370 -11.79469 -11.65750 -11.54288 -11.53981 -11.48510 -11.12446 -11.08101 -11.02734 -10.39543 -10.29038 -10.11394 -10.09767 -9.89820 -9.59068 -9.10851 -8.59662 -8.21599 -8.03906 -6.48907 -3.89869 0.92894 1.65870 2.74983 3.10915 3.11461 3.17715 3.22996 3.29792 3.81681 3.83805 3.97662 4.07417 4.22399 4.66608 4.67276 4.76761 4.87954 4.90225 4.95600 5.01997 5.03605 5.12717 5.19578 5.30904 5.39923 5.40662 5.52482 5.56288 5.59050 5.60306 5.66211 5.71596 5.78891 5.82738 5.90417 5.96704 5.98818 6.15202 6.17070 6.34530 7.03411 7.42999 7.48525 7.48920 7.98851 8.04816 8.10653 8.52982 9.10866 9.46295 9.97073 10.68649 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012549 B = 0.002390 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2230.709623 B =11714.799037 C =13327.495914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.025 4.025 3 C -0.143 4.143 4 C 0.076 3.924 5 N -0.357 5.357 6 O 0.097 5.903 7 C 0.002 3.998 8 C -0.254 4.254 9 C 0.595 3.405 10 O -0.539 6.539 11 N -0.704 5.704 12 C 0.136 3.864 13 C 0.067 3.933 14 H 0.085 0.915 15 C -0.181 4.181 16 N -0.665 5.665 17 C 0.049 3.951 18 C 0.438 3.562 19 O -0.583 6.583 20 N -0.562 5.562 21 C -0.299 4.299 22 H 0.104 0.896 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.281 1.281 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.228 0.772 37 H 0.408 0.592 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.354 0.646 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.392 0.608 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.834 5.594 -10.985 20.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.044 4.044 3 C -0.200 4.200 4 C -0.087 4.087 5 N -0.063 5.063 6 O 0.038 5.962 7 C -0.081 4.081 8 C -0.262 4.262 9 C 0.381 3.619 10 O -0.418 6.418 11 N -0.354 5.354 12 C 0.011 3.989 13 C -0.044 4.044 14 H 0.103 0.897 15 C -0.240 4.240 16 N -0.298 5.298 17 C -0.084 4.084 18 C 0.223 3.777 19 O -0.467 6.467 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.207 1.207 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.130 0.870 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.244 0.756 37 H 0.244 0.756 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.175 0.825 44 H 0.104 0.896 45 H 0.064 0.936 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.788 7.698 -10.693 21.341 hybrid contribution 1.683 -1.824 0.212 2.491 sum -15.105 5.875 -10.480 19.300 Atomic orbital electron populations 1.21809 0.93552 1.02186 1.02380 1.19800 0.96095 0.95742 0.92791 1.21814 1.01485 0.94388 1.02360 1.24804 0.96522 0.93553 0.93786 1.73620 1.17005 1.13843 1.01854 1.84594 1.48258 1.29521 1.33866 1.26548 0.95390 0.94024 0.92110 1.22335 1.08408 1.01324 0.94094 1.16805 0.78238 0.79885 0.86972 1.90750 1.60179 1.69399 1.21499 1.45611 1.50814 1.27774 1.11248 1.21376 0.96681 0.92268 0.88535 1.21863 0.94533 0.94732 0.93254 0.89692 1.22430 1.01424 1.01187 0.98985 1.60201 1.16110 1.35295 1.18159 1.21728 0.98762 0.93211 0.94653 1.19796 0.86106 0.87318 0.84446 1.90541 1.63984 1.18551 1.73632 1.41878 1.36059 1.14266 1.27696 1.19742 1.14873 0.99627 1.08662 0.87861 1.25269 0.98975 0.95365 0.98300 1.69613 1.43665 1.07277 1.33636 0.85809 0.79921 0.79190 0.79499 1.19195 1.20690 1.20746 0.91588 0.92268 0.92523 0.86957 0.92263 0.92363 0.91577 0.75569 0.75583 0.91063 0.91224 0.91856 0.91786 0.91916 0.82539 0.89637 0.93635 0.77486 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.18 37.16 0.34 -0.95 16 2 C -0.03 -0.27 3.33 -91.77 -0.31 -0.58 16 3 C -0.14 -1.38 9.17 37.15 0.34 -1.04 16 4 C 0.08 0.95 6.09 -79.77 -0.49 0.46 16 5 N -0.36 -4.52 12.01 34.78 0.42 -4.10 16 6 O 0.10 1.10 11.06 18.65 0.21 1.31 16 7 C 0.00 0.02 11.85 30.42 0.36 0.38 16 8 C -0.25 -3.03 6.47 -102.90 -0.67 -3.70 16 9 C 0.59 7.66 7.81 -12.53 -0.10 7.56 16 10 O -0.54 -8.29 15.25 5.27 0.08 -8.21 16 11 N -0.70 -7.71 5.38 -61.39 -0.33 -8.04 16 12 C 0.14 1.39 5.37 -4.04 -0.02 1.36 16 13 C 0.07 0.65 2.75 -67.71 -0.19 0.46 16 14 H 0.08 0.75 7.80 -51.93 -0.40 0.35 16 15 C -0.18 -1.55 9.16 37.16 0.34 -1.21 16 16 N -0.66 -8.74 5.31 -107.99 -0.57 -9.31 16 17 C 0.05 0.73 5.96 -4.97 -0.03 0.70 16 18 C 0.44 9.43 7.82 -10.98 -0.09 9.35 16 19 O -0.58 -14.73 15.78 5.55 0.09 -14.65 16 20 N -0.56 -13.36 5.29 -10.96 -0.06 -13.42 16 21 C -0.30 -8.00 9.68 -14.93 -0.14 -8.15 16 22 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -23.65 13.05 55.50 0.72 -22.93 16 25 Si 0.93 20.44 29.55 -169.99 -5.02 15.42 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.11 1.35 6.29 -51.93 -0.33 1.03 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.23 1.42 7.68 -52.49 -0.40 1.01 16 37 H 0.41 4.10 7.32 -40.82 -0.30 3.80 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 43 H 0.35 5.16 8.17 -39.29 -0.32 4.84 16 44 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 45 H 0.05 0.62 7.43 -51.93 -0.39 0.24 16 46 H 0.39 8.89 7.90 -40.82 -0.32 8.57 16 47 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 399.15 15.07 6.02 6.02 Total: -1.00 -32.32 399.15 -6.20 -38.51 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.01 Total: 14.26 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -0.74 Total: 5.14 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.18 Total: -57.80 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: 0.37 Total: -21.55 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.32 -6.20 -38.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567022607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.854 kcal (2) G-P(sol) polarization free energy of solvation -32.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds