Wall clock time and date at job start Tue Mar 31 2020 20:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 N 1.46903 * 109.47116 * 174.99934 * 4 2 1 6 6 C 1.46896 * 111.00003 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47209 * 179.97438 * 6 5 4 8 8 O 1.21292 * 120.00080 * 0.02562 * 7 6 5 9 9 N 1.34781 * 119.99928 * 179.97438 * 7 6 5 10 10 C 1.37093 * 119.99630 * 179.97438 * 9 7 6 11 11 H 1.07991 * 120.00426 * 0.02562 * 10 9 7 12 12 C 1.38954 * 119.99627 * 180.02562 * 10 9 7 13 13 N 1.31408 * 120.00169 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99892 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.47282 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47223 * 120.00210 * 14 12 10 17 17 H 1.48498 * 109.47179 * 239.99976 * 14 12 10 18 18 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 19 19 C 1.46505 * 120.00341 * 300.00268 * 18 2 1 20 20 C 1.34779 * 119.99848 * 120.00098 * 18 2 1 21 21 O 1.21282 * 120.00232 * 0.02562 * 20 18 2 22 22 C 1.50702 * 120.00153 * 180.02562 * 20 18 2 23 23 C 1.53004 * 109.47499 * 180.02562 * 22 20 18 24 24 C 1.50699 * 109.47319 * 179.97438 * 23 22 20 25 25 C 1.41377 * 126.80048 * 124.70651 * 24 23 22 26 26 C 1.35448 * 103.98362 * 179.88758 * 25 24 23 27 27 O 1.34043 * 106.44875 * 0.37226 * 26 25 24 28 28 N 1.20918 * 111.56393 * 359.74747 * 27 26 25 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.46750 * 294.99553 * 4 2 1 33 33 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 34 34 H 1.00901 * 110.99875 * 56.04236 * 5 4 2 35 35 H 1.09003 * 109.46964 * 299.99834 * 6 5 4 36 36 H 1.09001 * 109.47414 * 59.99664 * 6 5 4 37 37 H 0.97003 * 119.99904 * 0.02562 * 9 7 6 38 38 H 0.96998 * 119.99954 * 179.97438 * 13 12 10 39 39 H 1.09005 * 109.46851 * 89.99998 * 19 18 2 40 40 H 1.08997 * 109.47129 * 209.99273 * 19 18 2 41 41 H 1.08993 * 109.46804 * 329.99912 * 19 18 2 42 42 H 1.09009 * 109.47061 * 300.00107 * 22 20 18 43 43 H 1.08996 * 109.47578 * 59.99511 * 22 20 18 44 44 H 1.08995 * 109.46617 * 299.99766 * 23 22 20 45 45 H 1.09001 * 109.46694 * 59.99362 * 23 22 20 46 46 H 1.08001 * 128.00763 * 0.02995 * 25 24 23 47 47 H 1.08006 * 126.77815 * 180.09656 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5041 -0.8267 1.1904 6 6 4.0304 -1.5149 2.3767 7 6 5.5317 -1.6045 2.2807 8 8 6.1066 -1.1403 1.3189 9 7 6.2355 -2.1996 3.2641 10 6 7.6012 -2.2816 3.1764 11 1 8.1130 -1.8690 2.3197 12 6 8.3268 -2.8955 4.1900 13 7 7.7039 -3.3980 5.2323 14 14 10.1877 -3.0066 4.0710 15 1 10.6419 -2.3692 2.8089 16 1 10.8004 -2.3053 5.2276 17 1 10.6001 -4.4331 4.0820 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4279 20 6 2.7932 -0.0357 -2.0833 21 8 3.0866 1.1253 -1.8912 22 6 3.2951 -0.7460 -3.3140 23 6 4.1458 0.2154 -4.1465 24 6 4.6482 -0.4950 -5.3769 25 6 4.4751 -0.0883 -6.7198 26 6 5.1048 -1.0495 -7.4367 27 8 5.5853 -1.9316 -6.5491 28 7 5.3226 -1.6079 -5.4141 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6054 -1.7199 1.2952 34 1 3.9280 0.0825 1.0824 35 1 3.7559 -0.9571 3.2720 36 1 3.6096 -2.5189 2.4309 37 1 5.7757 -2.5705 4.0334 38 1 8.2104 -3.8269 5.9396 39 1 0.7375 -2.1444 -1.9993 40 1 2.4628 -2.5819 -1.9863 41 1 1.5295 -2.5969 -0.4708 42 1 3.9005 -1.6027 -3.0176 43 1 2.4472 -1.0882 -3.9073 44 1 3.5408 1.0722 -4.4429 45 1 4.9937 0.5573 -3.5530 46 1 3.9617 0.7875 -7.0885 47 1 5.1974 -1.0983 -8.5117 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732431908.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:03 Heat of formation + Delta-G solvation = -8.969786 kcal Electronic energy + Delta-G solvation = -29106.692460 eV Core-core repulsion = 24907.112377 eV Total energy + Delta-G solvation = -4199.580083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.08891 -40.05561 -38.25168 -36.93862 -35.37163 -34.63946 -33.75342 -32.51457 -31.80394 -31.17251 -30.82252 -27.56336 -26.90950 -25.76330 -24.90359 -23.31297 -23.18103 -21.63458 -20.60499 -19.28891 -18.86711 -18.09275 -17.83705 -17.66705 -17.12244 -16.45452 -15.96020 -15.74506 -15.12635 -15.10285 -14.58355 -14.47058 -14.09764 -13.90070 -13.84474 -13.54655 -13.43814 -13.22502 -12.87100 -12.72547 -12.57853 -12.47795 -12.29063 -12.08317 -11.91712 -11.76229 -11.64543 -11.46581 -11.39628 -11.05412 -11.02640 -10.88016 -10.31209 -10.21128 -10.19002 -9.84313 -9.62212 -9.48310 -8.60936 -8.38336 -8.00760 -7.91782 -6.38521 -3.78901 1.33708 2.05879 2.75203 3.02010 3.11344 3.19094 3.29362 3.37475 3.95159 4.00728 4.11119 4.28642 4.35981 4.64594 4.85198 4.93309 4.95437 5.00854 5.02109 5.10650 5.13584 5.23400 5.25817 5.29645 5.35699 5.41784 5.46210 5.48154 5.53379 5.57841 5.74984 5.77701 5.81566 5.88227 5.92465 5.99955 6.02036 6.03829 6.29863 6.57328 7.25300 7.44433 7.58973 7.69438 8.10540 8.13810 8.28562 8.65389 9.21976 9.58251 10.10254 10.79478 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008364 B = 0.002820 C = 0.002205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3346.919136 B = 9925.105758 C =12693.517088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.137 3.863 3 H 0.100 0.900 4 C 0.047 3.953 5 N -0.663 5.663 6 C 0.052 3.948 7 C 0.441 3.559 8 O -0.579 6.579 9 N -0.566 5.566 10 C -0.296 4.296 11 H 0.103 0.897 12 C 0.021 3.979 13 N -0.903 5.903 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.593 5.593 19 C 0.083 3.917 20 C 0.526 3.474 21 O -0.545 6.545 22 C -0.132 4.132 23 C -0.026 4.026 24 C 0.018 3.982 25 C -0.232 4.232 26 C -0.064 4.064 27 O 0.100 5.900 28 N -0.357 5.357 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.351 0.649 35 H 0.042 0.958 36 H 0.084 0.916 37 H 0.392 0.608 38 H 0.270 0.730 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.171 0.829 47 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.929 3.739 -19.044 25.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.033 3.967 3 H 0.118 0.882 4 C -0.084 4.084 5 N -0.295 5.295 6 C -0.081 4.081 7 C 0.226 3.774 8 O -0.463 6.463 9 N -0.203 5.203 10 C -0.426 4.426 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.545 5.545 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.325 5.325 19 C -0.060 4.060 20 C 0.314 3.686 21 O -0.423 6.423 22 C -0.172 4.172 23 C -0.065 4.065 24 C -0.141 4.141 25 C -0.254 4.254 26 C -0.146 4.146 27 O 0.033 5.967 28 N -0.061 5.061 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.171 0.829 35 H 0.060 0.940 36 H 0.102 0.898 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.188 0.812 47 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -15.845 3.154 -18.864 24.836 hybrid contribution 0.122 0.786 0.768 1.106 sum -15.723 3.940 -18.096 24.294 Atomic orbital electron populations 1.22075 0.94687 1.02365 1.02429 1.21080 0.93450 0.98063 0.84101 0.88211 1.22358 0.89748 1.00445 0.95821 1.60022 1.02994 1.26937 1.39587 1.21663 0.95305 0.99725 0.91412 1.19826 0.88036 0.84494 0.84998 1.90545 1.71079 1.51571 1.33081 1.41870 1.07403 1.51206 1.19796 1.19752 0.81533 1.34919 1.06405 0.87921 1.25253 1.00662 0.96857 0.95251 1.69619 1.36558 1.38892 1.09436 0.85809 0.82302 0.77900 0.78409 1.19198 1.20794 1.20743 1.47515 1.50733 1.12179 1.22101 1.21696 1.00112 0.81811 1.02414 1.20397 0.77282 0.86733 0.84166 1.90673 1.57327 1.17293 1.76985 1.21600 1.00879 1.00129 0.94628 1.19744 1.00329 0.96297 0.90111 1.23731 0.99638 0.93857 0.96839 1.22772 1.06972 1.03473 0.92169 1.26027 0.99135 0.91090 0.98355 1.84878 1.58225 1.42729 1.10885 1.73921 1.16425 1.16086 0.99636 0.92164 0.91431 0.92195 0.94490 0.90875 0.82947 0.94046 0.89827 0.77532 0.91987 0.93225 0.90959 0.90794 0.87945 0.89279 0.89005 0.88669 0.81182 0.76872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.19 37.16 0.34 -0.97 16 2 C 0.14 1.57 2.88 -67.93 -0.20 1.38 16 3 H 0.10 1.35 6.90 -51.93 -0.36 1.00 16 4 C 0.05 0.57 4.93 -3.82 -0.02 0.55 16 5 N -0.66 -11.15 5.85 -115.06 -0.67 -11.82 16 6 C 0.05 0.94 6.17 -4.98 -0.03 0.91 16 7 C 0.44 10.78 7.82 -10.98 -0.09 10.70 16 8 O -0.58 -16.42 15.78 5.55 0.09 -16.34 16 9 N -0.57 -14.75 5.29 -10.96 -0.06 -14.81 16 10 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 11 H 0.10 3.12 7.16 -52.49 -0.38 2.74 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -25.07 13.05 55.50 0.72 -24.34 16 14 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 N -0.59 -7.12 2.48 -173.93 -0.43 -7.56 16 19 C 0.08 0.78 9.30 59.85 0.56 1.34 16 20 C 0.53 7.36 7.67 -10.98 -0.08 7.27 16 21 O -0.55 -9.38 15.31 5.56 0.09 -9.29 16 22 C -0.13 -1.54 4.23 -27.88 -0.12 -1.66 16 23 C -0.03 -0.31 5.10 -27.88 -0.14 -0.45 16 24 C 0.02 0.21 6.59 -82.10 -0.54 -0.33 16 25 C -0.23 -1.92 11.12 -39.38 -0.44 -2.35 16 26 C -0.06 -0.46 12.30 29.74 0.37 -0.09 16 27 O 0.10 1.09 11.20 17.17 0.19 1.28 16 28 N -0.36 -4.75 12.06 33.42 0.40 -4.35 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.44 7.67 -51.93 -0.40 0.04 16 32 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.81 6.88 -51.93 -0.36 0.46 16 34 H 0.35 6.61 8.43 -39.29 -0.33 6.28 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 37 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.70 6.44 -51.93 -0.33 0.37 16 41 H 0.07 0.69 6.53 -51.93 -0.34 0.35 16 42 H 0.10 1.33 7.40 -51.92 -0.38 0.95 16 43 H 0.09 0.82 8.11 -51.93 -0.42 0.40 16 44 H 0.09 0.96 8.09 -51.93 -0.42 0.54 16 45 H 0.09 1.34 8.10 -51.93 -0.42 0.92 16 46 H 0.17 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.21 0.50 8.06 -52.48 -0.42 0.07 16 LS Contribution 397.25 15.07 5.99 5.99 Total: -1.00 -36.08 397.25 -6.32 -42.40 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: -6.98 Total: 14.13 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: -0.63 Total: 8.11 kcal Atomic # 7 Polarization: -62.84 SS G_CDS: -0.04 Total: -62.88 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: 0.36 Total: -24.35 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.08 -6.32 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732431908.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.432 kcal (2) G-P(sol) polarization free energy of solvation -36.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds