Wall clock time and date at job start Tue Mar 31 2020 20:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 119.99698 * 2 1 4 4 H 1.48496 * 109.47140 * 269.99501 * 3 2 1 5 5 H 1.48498 * 109.47260 * 30.00193 * 3 2 1 6 6 H 1.48506 * 109.46966 * 149.99920 * 3 2 1 7 7 C 1.38814 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00250 * 164.13746 * 7 2 1 9 9 N 1.36936 * 119.99731 * 344.13397 * 7 2 1 10 10 C 1.47171 * 121.07863 * 153.78427 * 9 7 2 11 11 C 1.53281 * 108.56633 * 128.73991 * 10 9 7 12 12 O 1.43125 * 109.22360 * 53.01277 * 11 10 9 13 13 C 1.41885 * 114.37407 * 299.10842 * 12 11 10 14 14 C 1.54354 * 110.75169 * 183.32512 * 13 12 11 15 15 C 1.54461 * 102.87708 * 83.66172 * 14 13 12 16 16 N 1.47089 * 107.29663 * 21.49078 * 15 14 13 17 17 C 1.34772 * 125.63220 * 180.74080 * 16 15 14 18 18 O 1.21605 * 119.99858 * 180.02562 * 17 16 15 19 19 C 1.47296 * 119.99840 * 0.02562 * 17 16 15 20 20 F 1.35097 * 120.00421 * 0.02562 * 19 17 16 21 21 C 1.33115 * 119.99838 * 179.97438 * 19 17 16 22 22 C 1.51452 * 126.34178 * 359.68827 * 21 19 17 23 23 C 1.54273 * 106.85083 * 180.24123 * 22 21 19 24 24 C 1.54989 * 103.66280 * 23.48520 * 23 22 21 25 25 C 1.51850 * 126.34006 * 180.02562 * 21 19 17 26 26 C 1.47578 * 108.73413 * 1.00414 * 16 15 14 27 27 C 1.47335 * 121.08616 * 333.76500 * 9 7 2 28 28 H 0.96999 * 120.00269 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.61783 * 248.46336 * 10 9 7 30 30 H 1.09003 * 109.62031 * 8.83069 * 10 9 7 31 31 H 1.09008 * 109.50467 * 172.92911 * 11 10 9 32 32 H 1.08997 * 109.51294 * 293.08143 * 11 10 9 33 33 H 1.09001 * 110.73211 * 325.31200 * 14 13 12 34 34 H 1.09003 * 110.88344 * 202.07848 * 14 13 12 35 35 H 1.09005 * 109.87726 * 262.07023 * 15 14 13 36 36 H 1.08996 * 109.88392 * 140.91728 * 15 14 13 37 37 H 1.08991 * 109.98316 * 299.72835 * 22 21 19 38 38 H 1.09001 * 109.98187 * 61.03231 * 22 21 19 39 39 H 1.09006 * 110.79991 * 264.86093 * 23 22 21 40 40 H 1.09002 * 110.55609 * 141.99365 * 23 22 21 41 41 H 1.09001 * 110.83081 * 204.48944 * 24 23 22 42 42 H 1.09002 * 111.00233 * 80.99086 * 24 23 22 43 43 H 1.08992 * 110.43855 * 274.92271 * 25 21 19 44 44 H 1.08994 * 110.44399 * 37.45499 * 25 21 19 45 45 H 1.08995 * 110.37207 * 95.50609 * 26 16 15 46 46 H 1.09004 * 110.37353 * 217.84391 * 26 16 15 47 47 H 1.08992 * 109.67559 * 109.45791 * 27 9 7 48 48 H 1.09009 * 109.70181 * 348.93882 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0594 -1.2201 -0.2551 9 7 1.3647 -2.3653 0.3253 10 6 1.8354 -3.6632 -0.1844 11 6 1.9817 -4.6278 0.9978 12 8 0.7557 -4.6583 1.7357 13 6 0.3711 -3.4076 2.2841 14 6 -0.9128 -3.5523 3.1286 15 6 -0.3734 -4.0243 4.4969 16 7 1.0430 -3.6339 4.5669 17 6 1.8749 -3.8790 5.5984 18 8 3.0319 -3.5079 5.5479 19 6 1.3828 -4.5963 6.7871 20 9 0.0976 -5.0090 6.8430 21 6 2.2046 -4.8388 7.8057 22 6 3.6660 -4.4504 7.8921 23 6 4.1827 -4.9537 9.2558 24 6 3.2066 -6.1026 9.6158 25 6 1.8524 -5.5624 9.0935 26 6 1.4009 -2.9238 3.3236 27 6 0.1767 -2.3582 1.1966 28 1 -0.4850 0.8400 -0.0004 29 1 1.1110 -4.0619 -0.8947 30 1 2.7991 -3.5352 -0.6774 31 1 2.2080 -5.6273 0.6262 32 1 2.7890 -4.2885 1.6468 33 1 -1.5766 -4.3010 2.6964 34 1 -1.4244 -2.5947 3.2251 35 1 -0.4636 -5.1077 4.5771 36 1 -0.9305 -3.5435 5.3009 37 1 4.2248 -4.9207 7.0831 38 1 3.7674 -3.3667 7.8345 39 1 4.1350 -4.1622 10.0038 40 1 5.2011 -5.3311 9.1636 41 1 3.1722 -6.2584 10.6940 42 1 3.4807 -7.0236 9.1012 43 1 1.4165 -4.8691 9.8126 44 1 1.1664 -6.3852 8.8924 45 1 1.3198 -1.8462 3.4653 46 1 2.4103 -3.1914 3.0110 47 1 -0.7101 -2.5976 0.6099 48 1 0.0609 -1.3747 1.6522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972340310.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:12 Heat of formation + Delta-G solvation = -80.227941 kcal Electronic energy + Delta-G solvation = -31027.056172 eV Core-core repulsion = 26804.466142 eV Total energy + Delta-G solvation = -4222.590030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -48.92249 -40.22654 -39.00845 -37.86823 -36.11421 -34.46849 -31.88866 -31.39004 -31.20884 -29.16843 -29.00878 -27.81020 -26.41917 -24.91700 -23.29120 -23.07437 -21.25042 -21.07618 -20.50976 -18.82841 -18.65554 -17.50719 -16.97505 -16.49750 -16.28525 -16.00358 -15.63040 -15.34968 -14.93069 -14.73662 -14.36928 -14.20839 -13.84452 -13.69926 -13.50148 -13.45878 -13.18478 -12.98788 -12.74587 -12.57858 -12.31298 -12.06975 -11.86298 -11.68403 -11.41611 -11.38861 -11.23281 -11.07963 -11.05825 -10.88223 -10.84811 -10.74510 -10.46763 -10.30340 -9.95334 -9.77540 -9.55180 -9.10132 -9.03695 -8.56466 -8.34106 -6.77064 -5.86960 -3.29729 1.07869 2.96868 3.12039 3.33851 3.41323 3.44244 4.02092 4.08640 4.23597 4.37806 4.42680 4.72753 4.84027 4.86990 4.98704 5.03573 5.16183 5.26009 5.29675 5.34875 5.38116 5.47723 5.55670 5.59085 5.68055 5.72795 5.77215 5.82157 5.86146 5.87477 5.96358 6.03217 6.05148 6.09423 6.20559 6.21061 6.22607 6.30684 6.45190 6.54746 6.62721 6.77489 7.02635 7.39033 7.61165 7.70327 7.90384 8.12834 8.29811 9.08584 9.71245 10.28471 11.21640 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015753 B = 0.003192 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.983738 B = 8769.275785 C = 9378.656374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.251 4.251 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.110 3.890 11 C 0.045 3.955 12 O -0.373 6.373 13 C 0.085 3.915 14 C -0.117 4.117 15 C 0.104 3.896 16 N -0.603 5.603 17 C 0.558 3.442 18 O -0.526 6.526 19 C 0.001 3.999 20 F -0.135 7.135 21 C -0.083 4.083 22 C -0.078 4.078 23 C -0.128 4.128 24 C -0.123 4.123 25 C -0.094 4.094 26 C 0.096 3.904 27 C 0.164 3.836 28 H 0.255 0.745 29 H 0.027 0.973 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.085 0.915 47 H 0.034 0.966 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 -11.623 16.710 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.381 4.381 8 H 0.086 0.914 9 N -0.319 5.319 10 C -0.016 4.016 11 C -0.033 4.033 12 O -0.292 6.292 13 C 0.043 3.957 14 C -0.155 4.155 15 C -0.019 4.019 16 N -0.335 5.335 17 C 0.346 3.654 18 O -0.405 6.405 19 C -0.021 4.021 20 F -0.114 7.114 21 C -0.087 4.087 22 C -0.115 4.115 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.131 4.131 26 C -0.025 4.025 27 C 0.038 3.962 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.065 0.935 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.097 0.903 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.052 0.948 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.535 -11.446 16.725 20.324 hybrid contribution 0.142 1.002 -0.183 1.029 sum 1.677 -10.444 16.542 19.635 Atomic orbital electron populations 1.69994 1.05201 1.25676 1.54072 1.25027 0.95369 0.98392 1.00767 0.86290 0.79247 0.83464 0.77796 1.21314 1.21457 1.20355 1.19174 0.92293 0.84240 1.42359 0.91355 1.44122 1.32286 1.01451 1.54052 1.21590 0.98711 0.87522 0.93814 1.23108 0.86332 0.99801 0.94097 1.87629 1.41077 1.30265 1.70233 1.22722 0.92466 0.86903 0.93607 1.22579 0.96936 1.03164 0.92864 1.22226 0.80892 1.00357 0.98381 1.48509 1.11542 1.55889 1.17594 1.17768 0.85350 0.80294 0.81941 1.90817 1.16559 1.53038 1.80103 1.18873 0.79881 1.06533 0.96852 1.91460 1.34876 1.88581 1.96495 1.22958 0.96879 0.95032 0.93791 1.21132 0.90137 1.02618 0.97635 1.22473 0.99227 0.98010 0.96824 1.22520 0.94048 0.98488 1.00953 1.21472 0.98575 0.99479 0.93527 1.22818 1.00972 0.96808 0.81939 1.21177 0.89400 0.96592 0.89079 0.93481 0.95499 0.91852 0.89883 0.93503 0.89128 0.88873 0.90984 0.91222 0.89183 0.89283 0.91202 0.90949 0.90867 0.90987 0.89315 0.90301 0.90053 0.89695 0.94759 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.32 11.11 55.49 0.62 -24.70 16 2 C 0.00 0.08 4.98 -17.43 -0.09 -0.01 16 3 Si 0.90 21.37 29.58 -169.99 -5.03 16.34 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.25 -6.72 9.66 -15.06 -0.15 -6.86 16 8 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -14.55 2.99 -172.23 -0.51 -15.07 16 10 C 0.11 2.29 6.71 -3.53 -0.02 2.26 16 11 C 0.04 0.82 6.78 37.30 0.25 1.07 16 12 O -0.37 -7.22 10.28 -35.22 -0.36 -7.58 16 13 C 0.09 1.62 0.83 -89.65 -0.07 1.54 16 14 C -0.12 -1.80 6.12 -25.26 -0.15 -1.96 16 15 C 0.10 1.51 5.49 -2.95 -0.02 1.50 16 16 N -0.60 -10.34 3.33 -172.07 -0.57 -10.91 16 17 C 0.56 9.53 7.80 -12.58 -0.10 9.43 16 18 O -0.53 -10.08 14.39 5.27 0.08 -10.01 16 19 C 0.00 0.01 7.31 -37.68 -0.28 -0.27 16 20 F -0.14 -1.80 14.16 2.25 0.03 -1.77 16 21 C -0.08 -0.99 6.16 -100.19 -0.62 -1.61 16 22 C -0.08 -0.89 4.82 -26.85 -0.13 -1.02 16 23 C -0.13 -1.03 6.88 -25.01 -0.17 -1.21 16 24 C -0.12 -0.89 6.94 -24.69 -0.17 -1.06 16 25 C -0.09 -0.82 6.44 -26.33 -0.17 -0.99 16 26 C 0.10 1.85 5.85 -2.87 -0.02 1.84 16 27 C 0.16 3.74 4.07 -3.91 -0.02 3.73 16 28 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.26 7.96 -51.93 -0.41 0.84 16 31 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 32 H 0.05 0.89 6.25 -51.93 -0.32 0.57 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.36 8.00 -51.93 -0.42 0.94 16 35 H 0.07 1.01 7.59 -51.93 -0.39 0.61 16 36 H 0.07 0.90 7.67 -51.93 -0.40 0.50 16 37 H 0.09 1.13 7.67 -51.93 -0.40 0.73 16 38 H 0.09 1.11 7.68 -51.93 -0.40 0.71 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.67 7.82 -51.93 -0.41 1.26 16 46 H 0.08 1.79 6.01 -51.93 -0.31 1.48 16 47 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.10 2.44 5.95 -51.92 -0.31 2.13 16 LS Contribution 374.21 15.07 5.64 5.64 Total: -1.00 -30.23 374.21 -9.58 -39.80 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.55 Total: 1.87 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -1.91 Total: 6.40 kcal Atomic # 7 Polarization: -50.21 SS G_CDS: -0.47 Total: -50.68 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.29 Total: -17.59 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.03 Total: -1.77 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.23 -9.58 -39.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972340310.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.427 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds