Wall clock time and date at job start Tue Mar 31 2020 22:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35947 * 116.99892 * 2 1 4 4 C 1.38730 * 120.02826 * 359.97438 * 3 2 1 5 5 C 1.38133 * 119.96821 * 180.02562 * 4 3 2 6 6 C 1.38476 * 120.02912 * 359.96912 * 5 4 3 7 7 F 1.35105 * 119.97085 * 180.02562 * 6 5 4 8 8 C 1.38444 * 120.06129 * 359.79636 * 6 5 4 9 9 C 1.38172 * 120.02710 * 0.46291 * 8 6 5 10 10 C 1.50696 * 120.01530 * 179.79267 * 9 8 6 11 11 H 1.08999 * 109.47566 * 213.06922 * 10 9 8 12 12 C 1.53002 * 109.47320 * 93.06405 * 10 9 8 13 13 N 1.46900 * 109.46819 * 333.06985 * 10 9 8 14 14 C 1.46902 * 111.00106 * 281.87369 * 13 10 9 15 15 H 1.09009 * 109.46683 * 37.20609 * 14 13 10 16 16 C 1.52993 * 109.47309 * 277.20532 * 14 13 10 17 17 C 1.50695 * 109.47186 * 157.20225 * 14 13 10 18 18 O 1.21279 * 120.00209 * 0.02562 * 17 14 13 19 19 N 1.34777 * 119.99965 * 180.02562 * 17 14 13 20 20 C 1.46503 * 120.00159 * 0.02562 * 19 17 14 21 21 C 1.46499 * 120.00163 * 180.02562 * 19 17 14 22 22 C 1.50698 * 109.47355 * 270.00160 * 21 19 17 23 23 H 1.08007 * 120.00009 * 359.97438 * 22 21 19 24 24 C 1.37879 * 120.00473 * 180.02562 * 22 21 19 25 25 N 1.31515 * 119.99670 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00141 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47005 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46908 * 119.99573 * 26 24 22 29 29 H 1.48495 * 109.47110 * 239.99762 * 26 24 22 30 30 H 1.08998 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47705 * 300.00098 * 1 2 3 32 32 H 1.08998 * 109.47204 * 60.00115 * 1 2 3 33 33 H 1.08002 * 120.01735 * 0.03842 * 4 3 2 34 34 H 1.07998 * 119.98830 * 180.02562 * 5 4 3 35 35 H 1.07995 * 119.98109 * 180.24983 * 8 6 5 36 36 H 1.09000 * 109.46858 * 58.94135 * 12 10 9 37 37 H 1.09001 * 109.47223 * 178.93817 * 12 10 9 38 38 H 1.08996 * 109.47511 * 298.94345 * 12 10 9 39 39 H 1.00899 * 111.00243 * 45.82940 * 13 10 9 40 40 H 1.09007 * 109.47182 * 52.02635 * 16 14 13 41 41 H 1.09006 * 109.47489 * 172.02129 * 16 14 13 42 42 H 1.08996 * 109.47618 * 292.02539 * 16 14 13 43 43 H 1.09003 * 109.46515 * 269.99876 * 20 19 17 44 44 H 1.09002 * 109.47012 * 29.99440 * 20 19 17 45 45 H 1.08995 * 109.47112 * 150.00301 * 20 19 17 46 46 H 1.08999 * 109.47215 * 29.99820 * 21 19 17 47 47 H 1.08996 * 109.47409 * 150.00193 * 21 19 17 48 48 H 0.96998 * 119.99547 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2911 2.3752 -0.0005 5 6 1.9195 3.6053 -0.0011 6 6 3.3024 3.6770 -0.0004 7 9 3.9157 4.8808 -0.0004 8 6 4.0570 2.5164 0.0050 9 6 3.4310 1.2846 0.0001 10 6 4.2528 0.0214 0.0013 11 1 3.7314 -0.7518 -0.5630 12 6 4.4602 -0.4508 1.4418 13 7 5.5575 0.2854 -0.6199 14 6 5.4460 0.3196 -2.0843 15 1 4.5031 0.7885 -2.3660 16 6 5.4895 -1.1081 -2.6326 17 6 6.5922 1.1128 -2.6570 18 8 7.4207 1.6011 -1.9181 19 7 6.6967 1.2795 -3.9903 20 6 5.6956 0.6901 -4.8829 21 6 7.8113 2.0501 -4.5471 22 6 7.4169 3.5009 -4.6505 23 1 6.4340 3.8172 -4.3336 24 6 8.3103 4.4243 -5.1507 25 7 9.5069 4.0390 -5.5371 26 14 7.8211 6.2225 -5.2795 27 1 6.4319 6.3943 -4.7835 28 1 8.7453 7.0468 -4.4600 29 1 7.8968 6.6558 -6.6978 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3635 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2125 2.3195 -0.0003 34 1 1.3320 4.5115 -0.0011 35 1 5.1354 2.5738 0.0096 36 1 3.4915 -0.6287 1.9089 37 1 5.0385 -1.3747 1.4416 38 1 4.9981 0.3145 2.0012 39 1 5.9591 1.1415 -0.2678 40 1 4.7506 -1.7191 -2.1140 41 1 5.2657 -1.0947 -3.6993 42 1 6.4830 -1.5277 -2.4750 43 1 6.0092 -0.3143 -5.1675 44 1 4.7357 0.6391 -4.3690 45 1 5.5973 1.3068 -5.7762 46 1 8.6799 1.9553 -3.8955 47 1 8.0572 1.6690 -5.5382 48 1 10.1353 4.6886 -5.8893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112531362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:00 Heat of formation + Delta-G solvation = -79.191521 kcal Electronic energy + Delta-G solvation = -30735.194190 eV Core-core repulsion = 26512.649103 eV Total energy + Delta-G solvation = -4222.545087 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -48.79220 -40.70112 -39.37831 -37.79360 -36.24630 -34.85604 -33.10197 -32.25525 -30.34002 -29.84359 -28.46992 -27.50722 -27.34130 -26.02678 -24.18942 -23.69020 -22.39309 -21.84344 -20.49893 -18.70842 -18.29724 -17.38088 -17.10731 -16.53900 -16.28881 -16.08930 -15.86483 -15.43106 -15.09167 -14.89172 -14.72861 -14.55071 -14.40775 -14.01433 -13.64364 -13.45312 -13.13457 -12.90113 -12.87970 -12.53176 -12.34216 -12.16535 -12.16055 -12.05534 -11.92282 -11.77338 -11.52969 -11.24632 -11.15821 -11.07471 -10.99054 -10.87904 -10.82396 -10.56366 -10.14223 -9.58979 -9.21128 -8.83419 -8.45471 -8.41618 -8.23477 -7.62567 -6.02701 -4.07274 0.92417 1.04161 2.94751 3.31117 3.33122 3.38434 3.41184 3.46113 3.79934 4.13898 4.34676 4.37107 4.47498 4.52551 4.70900 4.80653 4.89359 5.00398 5.04512 5.13317 5.18320 5.24893 5.31596 5.35417 5.45332 5.49146 5.57880 5.65198 5.76178 5.77908 5.85343 5.90778 5.92415 5.97355 6.00159 6.12970 6.18918 6.21890 6.40347 6.52228 6.95125 7.05257 7.16018 7.45379 7.50175 7.56552 7.93902 8.25065 8.42777 8.91420 9.09306 9.57938 11.05368 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.003844 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.789352 B = 7282.181748 C = 8567.461869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.309 6.309 3 C 0.121 3.879 4 C -0.179 4.179 5 C -0.119 4.119 6 C 0.074 3.926 7 F -0.136 7.136 8 C -0.115 4.115 9 C -0.114 4.114 10 C 0.132 3.868 11 H 0.097 0.903 12 C -0.131 4.131 13 N -0.663 5.663 14 C 0.065 3.935 15 H 0.063 0.937 16 C -0.143 4.143 17 C 0.505 3.495 18 O -0.536 6.536 19 N -0.598 5.598 20 C 0.081 3.919 21 C 0.246 3.754 22 C -0.525 4.525 23 H 0.056 0.944 24 C 0.062 3.938 25 N -0.894 5.894 26 Si 0.896 3.104 27 H -0.274 1.274 28 H -0.282 1.282 29 H -0.283 1.283 30 H 0.101 0.899 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.145 0.855 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.355 0.645 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.032 0.968 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.587 -10.318 10.748 25.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.222 6.222 3 C 0.075 3.925 4 C -0.198 4.198 5 C -0.138 4.138 6 C 0.055 3.945 7 F -0.114 7.114 8 C -0.134 4.134 9 C -0.117 4.117 10 C 0.021 3.979 11 H 0.115 0.885 12 C -0.189 4.189 13 N -0.299 5.299 14 C -0.049 4.049 15 H 0.081 0.919 16 C -0.200 4.200 17 C 0.291 3.709 18 O -0.413 6.413 19 N -0.330 5.330 20 C -0.063 4.063 21 C 0.126 3.874 22 C -0.564 4.564 23 H 0.075 0.925 24 C -0.140 4.140 25 N -0.533 5.533 26 Si 0.724 3.276 27 H -0.198 1.198 28 H -0.208 1.208 29 H -0.210 1.210 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.180 0.820 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.050 0.950 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.616 -10.781 11.053 24.964 hybrid contribution -0.936 2.481 -0.417 2.684 sum -20.552 -8.301 10.636 24.585 Atomic orbital electron populations 1.23081 0.78415 1.04087 1.01341 1.86091 1.21212 1.26250 1.88661 1.18745 0.91503 0.84420 0.97816 1.21041 1.00205 0.91348 1.07223 1.20918 0.92653 0.98760 1.01491 1.17540 0.90745 0.80810 1.05435 1.91538 1.83284 1.42587 1.94030 1.20971 1.01398 0.90365 1.00715 1.20038 0.91299 0.96708 1.03669 1.20541 0.87721 0.92529 0.97111 0.88524 1.21690 1.01515 1.01845 0.93838 1.60649 1.21488 1.44017 1.03714 1.21451 0.97140 0.97206 0.89061 0.91940 1.21943 1.03051 0.94192 1.00863 1.20241 0.86777 0.80898 0.82988 1.90653 1.42506 1.49826 1.58305 1.48069 1.27817 1.52107 1.05015 1.21802 0.91313 0.97773 0.95375 1.19297 0.84210 0.89817 0.94036 1.21459 1.00306 0.92630 1.42000 0.92537 1.24924 0.94781 0.99033 0.95302 1.69943 1.05913 1.34558 1.42900 0.86470 0.78715 0.84904 0.77533 1.19816 1.20806 1.20957 0.88081 0.92656 0.92612 0.84568 0.84515 0.83699 0.92213 0.91298 0.92580 0.81961 0.92114 0.91148 0.91667 0.93293 0.92454 0.90886 0.93765 0.94973 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.14 16 2 O -0.31 -2.94 9.60 -19.57 -0.19 -3.13 16 3 C 0.12 1.34 6.66 -39.23 -0.26 1.08 16 4 C -0.18 -1.78 9.04 -39.44 -0.36 -2.13 16 5 C -0.12 -1.36 10.02 -39.53 -0.40 -1.75 16 6 C 0.07 1.06 7.30 -39.42 -0.29 0.77 16 7 F -0.14 -2.21 17.27 2.25 0.04 -2.17 16 8 C -0.12 -1.66 9.17 -39.53 -0.36 -2.02 16 9 C -0.11 -1.45 4.33 -104.48 -0.45 -1.90 16 10 C 0.13 1.60 2.43 -68.87 -0.17 1.44 16 11 H 0.10 1.14 6.44 -51.93 -0.33 0.81 16 12 C -0.13 -1.40 9.50 37.16 0.35 -1.04 16 13 N -0.66 -9.95 5.76 -102.17 -0.59 -10.54 16 14 C 0.06 1.02 1.98 -68.87 -0.14 0.89 16 15 H 0.06 0.97 6.63 -51.92 -0.34 0.63 16 16 C -0.14 -1.87 8.97 37.15 0.33 -1.53 16 17 C 0.51 10.72 7.09 -10.99 -0.08 10.65 16 18 O -0.54 -13.56 15.27 5.56 0.08 -13.48 16 19 N -0.60 -12.91 2.86 -182.96 -0.52 -13.43 16 20 C 0.08 1.32 8.79 59.85 0.53 1.84 16 21 C 0.25 6.53 5.16 -5.20 -0.03 6.51 16 22 C -0.53 -15.17 9.39 -34.44 -0.32 -15.49 16 23 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 24 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 25 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 26 Si 0.90 22.35 29.54 -169.99 -5.02 17.33 16 27 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 32 H 0.06 0.27 7.66 -51.93 -0.40 -0.12 16 33 H 0.14 0.94 6.30 -52.49 -0.33 0.61 16 34 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 35 H 0.15 2.28 6.00 -52.49 -0.32 1.97 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.36 5.97 5.04 -39.29 -0.20 5.77 16 40 H 0.06 0.68 7.11 -51.92 -0.37 0.31 16 41 H 0.07 0.83 4.79 -51.93 -0.25 0.58 16 42 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 43 H 0.05 0.67 7.13 -51.93 -0.37 0.30 16 44 H 0.06 0.79 5.92 -51.93 -0.31 0.48 16 45 H 0.07 1.21 8.07 -51.93 -0.42 0.80 16 46 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 47 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 48 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 389.11 15.07 5.86 5.86 Total: -1.00 -34.20 389.11 -7.26 -41.45 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -6.92 Total: 4.17 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -0.74 Total: 0.13 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.37 Total: -50.17 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.10 Total: -16.60 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.20 -7.26 -41.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112531362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.739 kcal (2) G-P(sol) polarization free energy of solvation -34.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds