Wall clock time and date at job start Tue Mar 31 2020 22:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35947 * 116.99892 * 2 1 4 4 C 1.38730 * 120.02826 * 359.97438 * 3 2 1 5 5 C 1.38133 * 119.96821 * 180.02562 * 4 3 2 6 6 C 1.38476 * 120.02912 * 359.96912 * 5 4 3 7 7 F 1.35105 * 119.97085 * 180.02562 * 6 5 4 8 8 C 1.38444 * 120.06129 * 359.79636 * 6 5 4 9 9 C 1.38172 * 120.02710 * 0.46291 * 8 6 5 10 10 C 1.50696 * 120.01530 * 179.79267 * 9 8 6 11 11 H 1.08999 * 109.47566 * 213.06922 * 10 9 8 12 12 C 1.53002 * 109.47320 * 93.06405 * 10 9 8 13 13 N 1.46900 * 109.46819 * 333.06985 * 10 9 8 14 14 C 1.46902 * 111.00106 * 281.87369 * 13 10 9 15 15 H 1.09009 * 109.46683 * 37.20609 * 14 13 10 16 16 C 1.52993 * 109.47309 * 277.20532 * 14 13 10 17 17 C 1.50695 * 109.47186 * 157.20225 * 14 13 10 18 18 O 1.21279 * 120.00209 * 0.02562 * 17 14 13 19 19 N 1.34777 * 119.99965 * 180.02562 * 17 14 13 20 20 C 1.46503 * 120.00159 * 0.02562 * 19 17 14 21 21 C 1.46499 * 120.00163 * 180.02562 * 19 17 14 22 22 C 1.50698 * 109.47355 * 270.00160 * 21 19 17 23 23 H 1.08007 * 120.00009 * 359.97438 * 22 21 19 24 24 C 1.37879 * 120.00473 * 180.02562 * 22 21 19 25 25 N 1.31515 * 119.99670 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00141 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47005 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46908 * 119.99573 * 26 24 22 29 29 H 1.48495 * 109.47110 * 239.99762 * 26 24 22 30 30 H 1.08998 * 109.47519 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47705 * 300.00098 * 1 2 3 32 32 H 1.08998 * 109.47204 * 60.00115 * 1 2 3 33 33 H 1.08002 * 120.01735 * 0.03842 * 4 3 2 34 34 H 1.07998 * 119.98830 * 180.02562 * 5 4 3 35 35 H 1.07995 * 119.98109 * 180.24983 * 8 6 5 36 36 H 1.09000 * 109.46858 * 58.94135 * 12 10 9 37 37 H 1.09001 * 109.47223 * 178.93817 * 12 10 9 38 38 H 1.08996 * 109.47511 * 298.94345 * 12 10 9 39 39 H 1.00899 * 111.00243 * 45.82940 * 13 10 9 40 40 H 1.09007 * 109.47182 * 52.02635 * 16 14 13 41 41 H 1.09006 * 109.47489 * 172.02129 * 16 14 13 42 42 H 1.08996 * 109.47618 * 292.02539 * 16 14 13 43 43 H 1.09003 * 109.46515 * 269.99876 * 20 19 17 44 44 H 1.09002 * 109.47012 * 29.99440 * 20 19 17 45 45 H 1.08995 * 109.47112 * 150.00301 * 20 19 17 46 46 H 1.08999 * 109.47215 * 29.99820 * 21 19 17 47 47 H 1.08996 * 109.47409 * 150.00193 * 21 19 17 48 48 H 0.96998 * 119.99547 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2911 2.3752 -0.0005 5 6 1.9195 3.6053 -0.0011 6 6 3.3024 3.6770 -0.0004 7 9 3.9157 4.8808 -0.0004 8 6 4.0570 2.5164 0.0050 9 6 3.4310 1.2846 0.0001 10 6 4.2528 0.0214 0.0013 11 1 3.7314 -0.7518 -0.5630 12 6 4.4602 -0.4508 1.4418 13 7 5.5575 0.2854 -0.6199 14 6 5.4460 0.3196 -2.0843 15 1 4.5031 0.7885 -2.3660 16 6 5.4895 -1.1081 -2.6326 17 6 6.5922 1.1128 -2.6570 18 8 7.4207 1.6011 -1.9181 19 7 6.6967 1.2795 -3.9903 20 6 5.6956 0.6901 -4.8829 21 6 7.8113 2.0501 -4.5471 22 6 7.4169 3.5009 -4.6505 23 1 6.4340 3.8172 -4.3336 24 6 8.3103 4.4243 -5.1507 25 7 9.5069 4.0390 -5.5371 26 14 7.8211 6.2225 -5.2795 27 1 6.4319 6.3943 -4.7835 28 1 8.7453 7.0468 -4.4600 29 1 7.8968 6.6558 -6.6978 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3635 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2125 2.3195 -0.0003 34 1 1.3320 4.5115 -0.0011 35 1 5.1354 2.5738 0.0096 36 1 3.4915 -0.6287 1.9089 37 1 5.0385 -1.3747 1.4416 38 1 4.9981 0.3145 2.0012 39 1 5.9591 1.1415 -0.2678 40 1 4.7506 -1.7191 -2.1140 41 1 5.2657 -1.0947 -3.6993 42 1 6.4830 -1.5277 -2.4750 43 1 6.0092 -0.3143 -5.1675 44 1 4.7357 0.6391 -4.3690 45 1 5.5973 1.3068 -5.7762 46 1 8.6799 1.9553 -3.8955 47 1 8.0572 1.6690 -5.5382 48 1 10.1353 4.6886 -5.8893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112531362.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:59 Heat of formation + Delta-G solvation = -102.378192 kcal Electronic energy + Delta-G solvation = -30736.199640 eV Core-core repulsion = 26512.649103 eV Total energy + Delta-G solvation = -4223.550537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.93124 -41.63260 -40.84682 -38.72094 -37.33745 -36.65137 -34.92844 -33.75157 -31.28038 -30.80108 -29.86925 -28.93424 -27.99881 -27.56516 -25.73548 -24.89194 -23.56360 -23.13139 -21.51738 -20.13767 -19.26433 -18.74230 -18.39200 -18.13066 -17.67813 -17.38153 -16.86843 -16.65174 -16.42888 -16.40822 -15.72963 -15.66188 -15.54161 -15.41788 -14.90927 -14.68485 -14.25057 -14.10679 -13.87338 -13.84882 -13.78017 -13.55300 -13.37444 -13.17574 -12.96429 -12.95690 -12.86871 -12.70752 -12.60896 -12.56675 -12.31296 -12.14781 -12.03992 -11.86155 -11.74640 -11.70621 -10.68033 -10.54182 -10.13514 -9.61805 -9.44336 -9.12175 -8.25958 -6.40539 0.01810 0.10381 1.31548 1.34712 1.46031 1.77596 2.22118 2.28582 2.38554 2.42667 3.03346 3.06651 3.27335 3.49318 3.56969 3.67468 3.99164 4.06915 4.08504 4.15722 4.25405 4.37712 4.43316 4.46653 4.48814 4.58762 4.63273 4.67284 4.74989 4.83068 4.88235 4.90066 4.92160 4.97588 5.00397 5.04709 5.09967 5.17388 5.21306 5.31464 5.36118 5.52174 5.59089 5.79164 5.97828 6.02929 6.21073 6.34516 6.66176 6.74940 7.24187 7.42231 8.81279 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.003844 C = 0.003267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.789352 B = 7282.181748 C = 8567.461869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.316 6.316 3 C 0.131 3.869 4 C -0.169 4.169 5 C -0.112 4.112 6 C 0.036 3.964 7 F -0.158 7.158 8 C -0.133 4.133 9 C -0.124 4.124 10 C 0.135 3.865 11 H 0.110 0.890 12 C -0.126 4.126 13 N -0.671 5.671 14 C 0.081 3.919 15 H 0.072 0.928 16 C -0.136 4.136 17 C 0.494 3.506 18 O -0.590 6.590 19 N -0.605 5.605 20 C 0.075 3.925 21 C 0.261 3.739 22 C -0.542 4.542 23 H 0.048 0.952 24 C 0.010 3.990 25 N -0.926 5.926 26 Si 0.964 3.036 27 H -0.272 1.272 28 H -0.281 1.281 29 H -0.264 1.264 30 H 0.122 0.878 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.175 0.825 34 H 0.160 0.840 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.043 0.957 39 H 0.342 0.658 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.088 0.912 45 H 0.066 0.934 46 H -0.003 1.003 47 H 0.027 0.973 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.750 -11.542 10.573 29.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.229 6.229 3 C 0.084 3.916 4 C -0.187 4.187 5 C -0.130 4.130 6 C 0.017 3.983 7 F -0.137 7.137 8 C -0.153 4.153 9 C -0.126 4.126 10 C 0.025 3.975 11 H 0.128 0.872 12 C -0.184 4.184 13 N -0.306 5.306 14 C -0.032 4.032 15 H 0.090 0.910 16 C -0.194 4.194 17 C 0.282 3.718 18 O -0.470 6.470 19 N -0.336 5.336 20 C -0.067 4.067 21 C 0.139 3.861 22 C -0.581 4.581 23 H 0.066 0.934 24 C -0.189 4.189 25 N -0.565 5.565 26 Si 0.788 3.212 27 H -0.196 1.196 28 H -0.207 1.207 29 H -0.189 1.189 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.193 0.807 34 H 0.177 0.823 35 H 0.134 0.866 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.165 0.835 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.085 0.915 46 H 0.015 0.985 47 H 0.045 0.955 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.832 -12.056 10.855 28.830 hybrid contribution 0.284 2.762 -0.326 2.796 sum -23.548 -9.294 10.530 27.418 Atomic orbital electron populations 1.23450 0.76048 1.06010 1.02554 1.86095 1.23565 1.25151 1.88079 1.18766 0.90919 0.85618 0.96293 1.21435 1.01983 0.90070 1.05212 1.21202 0.91247 1.00537 1.00041 1.17927 0.92238 0.79985 1.08124 1.91468 1.83926 1.43781 1.94521 1.20834 1.00208 0.91684 1.02549 1.19988 0.92424 0.95772 1.04457 1.20633 0.86317 0.92698 0.97803 0.87195 1.21662 1.02321 1.01522 0.92853 1.60771 1.23375 1.43182 1.03235 1.21404 0.94361 0.97948 0.89504 0.91018 1.21960 1.03161 0.92102 1.02187 1.21297 0.87592 0.80446 0.82433 1.90617 1.44891 1.51987 1.59553 1.48081 1.27652 1.51751 1.06153 1.22123 0.91288 0.98741 0.94512 1.18752 0.84720 0.89940 0.92652 1.21684 1.00099 0.94044 1.42229 0.93398 1.25809 0.94679 1.03662 0.94738 1.70048 1.06871 1.36262 1.43339 0.85427 0.78206 0.79154 0.78387 1.19625 1.20686 1.18916 0.86022 0.91219 0.91509 0.80738 0.82283 0.86583 0.90556 0.90857 0.93752 0.83526 0.89267 0.89372 0.93144 0.90208 0.89372 0.91473 0.98452 0.95532 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.71 9.60 -92.95 -0.89 -5.60 16 3 C 0.13 2.51 6.66 22.49 0.15 2.66 16 4 C -0.17 -2.75 9.04 22.36 0.20 -2.55 16 5 C -0.11 -2.34 10.02 22.30 0.22 -2.12 16 6 C 0.04 1.07 7.30 22.38 0.16 1.23 16 7 F -0.16 -5.47 17.27 44.97 0.78 -4.70 16 8 C -0.13 -4.02 9.17 22.30 0.20 -3.82 16 9 C -0.12 -3.01 4.33 -19.77 -0.09 -3.10 16 10 C 0.14 3.13 2.43 44.17 0.11 3.24 16 11 H 0.11 2.25 6.44 -2.39 -0.02 2.24 16 12 C -0.13 -2.54 9.50 71.98 0.68 -1.85 16 13 N -0.67 -20.41 5.76 -477.17 -2.75 -23.16 16 14 C 0.08 2.52 1.98 44.16 0.09 2.61 16 15 H 0.07 2.12 6.63 -2.38 -0.02 2.10 16 16 C -0.14 -3.25 8.97 71.98 0.65 -2.60 16 17 C 0.49 21.76 7.09 87.66 0.62 22.38 16 18 O -0.59 -32.00 15.27 -3.03 -0.05 -32.04 16 19 N -0.61 -26.78 2.86 -851.14 -2.43 -29.21 16 20 C 0.08 2.33 8.79 127.77 1.12 3.45 16 21 C 0.26 14.58 5.16 85.63 0.44 15.02 16 22 C -0.54 -32.43 9.39 25.60 0.24 -32.19 16 23 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 24 C 0.01 0.61 5.46 84.66 0.46 1.08 16 25 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 26 Si 0.96 46.61 29.54 68.60 2.03 48.64 16 27 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 28 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 29 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 30 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 0.28 7.66 -2.38 -0.02 0.26 16 32 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 33 H 0.18 1.47 6.30 -2.91 -0.02 1.45 16 34 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.12 4.10 6.00 -2.91 -0.02 4.08 16 36 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.34 12.33 5.04 -89.69 -0.45 11.88 16 40 H 0.09 1.65 7.11 -2.38 -0.02 1.63 16 41 H 0.09 1.77 4.79 -2.38 -0.01 1.76 16 42 H 0.05 1.37 8.13 -2.39 -0.02 1.35 16 43 H 0.08 1.99 7.13 -2.39 -0.02 1.98 16 44 H 0.09 2.18 5.92 -2.39 -0.01 2.17 16 45 H 0.07 2.17 8.07 -2.39 -0.02 2.15 16 46 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 47 H 0.03 1.49 8.07 -2.39 -0.02 1.47 16 48 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 Total: -1.00 -79.96 389.11 3.89 -76.07 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.54 Total: 22.31 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 6.38 Total: 4.64 kcal Atomic # 7 Polarization: -104.44 SS G_CDS: -4.89 Total: -109.33 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -0.94 Total: -37.64 kcal Atomic # 9 Polarization: -5.47 SS G_CDS: 0.78 Total: -4.70 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -79.96 3.89 -76.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112531362.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.304 kcal (2) G-P(sol) polarization free energy of solvation -79.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds