Wall clock time and date at job start Tue Mar 31 2020 22:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35952 * 117.00019 * 2 1 4 4 C 1.38733 * 120.02856 * 0.23711 * 3 2 1 5 5 C 1.38121 * 119.97053 * 180.31437 * 4 3 2 6 6 C 1.38481 * 120.02737 * 359.68231 * 5 4 3 7 7 F 1.35103 * 119.97002 * 180.02562 * 6 5 4 8 8 C 1.38437 * 120.06357 * 0.04086 * 6 5 4 9 9 C 1.38168 * 120.02437 * 0.02562 * 8 6 5 10 10 C 1.50710 * 120.01216 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.46875 * 145.00157 * 10 9 8 12 12 C 1.52991 * 109.47112 * 265.00415 * 10 9 8 13 13 N 1.46901 * 109.46951 * 25.00343 * 10 9 8 14 14 C 1.46893 * 111.00198 * 154.99649 * 13 10 9 15 15 H 1.09004 * 109.47276 * 35.00075 * 14 13 10 16 16 C 1.53000 * 109.47358 * 275.00066 * 14 13 10 17 17 C 1.50704 * 109.47356 * 154.99893 * 14 13 10 18 18 O 1.21281 * 119.99845 * 5.94058 * 17 14 13 19 19 N 1.34774 * 120.00038 * 185.94011 * 17 14 13 20 20 C 1.46508 * 120.00002 * 4.61499 * 19 17 14 21 21 C 1.46497 * 120.00059 * 184.61065 * 19 17 14 22 22 C 1.50708 * 109.46978 * 89.99957 * 21 19 17 23 23 H 1.08003 * 119.99878 * 0.02562 * 22 21 19 24 24 C 1.37870 * 120.00206 * 180.02562 * 22 21 19 25 25 N 1.31516 * 119.99997 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00100 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47218 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47658 * 119.99729 * 26 24 22 29 29 H 1.48503 * 109.47050 * 240.00122 * 26 24 22 30 30 H 1.08997 * 109.47280 * 60.00261 * 1 2 3 31 31 H 1.09009 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47597 * 299.99628 * 1 2 3 33 33 H 1.08002 * 120.01128 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.98832 * 179.70256 * 5 4 3 35 35 H 1.07998 * 119.98565 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.47527 * 299.99505 * 12 10 9 37 37 H 1.09000 * 109.47462 * 60.00101 * 12 10 9 38 38 H 1.08999 * 109.46971 * 180.02562 * 12 10 9 39 39 H 1.00895 * 111.00065 * 278.95576 * 13 10 9 40 40 H 1.08996 * 109.47504 * 309.16786 * 16 14 13 41 41 H 1.09002 * 109.47369 * 69.17226 * 16 14 13 42 42 H 1.08999 * 109.47121 * 189.16413 * 16 14 13 43 43 H 1.09001 * 109.47080 * 95.84723 * 20 19 17 44 44 H 1.08998 * 109.46489 * 215.84334 * 20 19 17 45 45 H 1.08996 * 109.46943 * 335.84476 * 20 19 17 46 46 H 1.08994 * 109.47634 * 210.00081 * 21 19 17 47 47 H 1.09001 * 109.47404 * 330.00923 * 21 19 17 48 48 H 0.97000 * 120.00285 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2911 2.3752 0.0050 5 6 1.9194 3.6053 -0.0016 6 6 3.3023 3.6770 -0.0065 7 9 3.9157 4.8808 -0.0124 8 6 4.0570 2.5164 -0.0057 9 6 3.4310 1.2847 -0.0005 10 6 4.2528 0.0214 -0.0002 11 1 3.7473 -0.7407 0.5929 12 6 4.4207 -0.4781 -1.4365 13 7 5.5740 0.2969 0.5800 14 6 6.1676 -0.9240 1.1411 15 1 5.8866 -1.7799 0.5273 16 6 5.6565 -1.1303 2.5683 17 6 7.6686 -0.7903 1.1594 18 8 8.1876 0.2606 0.8476 19 7 8.4341 -1.8385 1.5222 20 6 7.8145 -3.1364 1.8010 21 6 9.8859 -1.6800 1.6377 22 6 10.2353 -1.2614 3.0427 23 1 9.4540 -1.1273 3.7763 24 6 11.5522 -1.0497 3.3917 25 7 12.5036 -1.2134 2.4986 26 14 11.9852 -0.5316 5.1333 27 1 10.7432 -0.4177 5.9392 28 1 12.8806 -1.5469 5.7438 29 1 12.6762 0.7826 5.1015 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2126 2.3195 0.0093 34 1 1.3319 4.5115 -0.0026 35 1 5.1355 2.5739 -0.0099 36 1 3.4405 -0.6826 -1.8670 37 1 4.9263 0.2840 -2.0295 38 1 5.0147 -1.3920 -1.4362 39 1 6.1878 0.7172 -0.1016 40 1 5.7920 -0.2117 3.1392 41 1 4.5979 -1.3886 2.5415 42 1 6.2155 -1.9377 3.0413 43 1 7.8619 -3.7608 0.9088 44 1 8.3478 -3.6260 2.6158 45 1 6.7729 -2.9881 2.0857 46 1 10.3742 -2.6271 1.4088 47 1 10.2251 -0.9174 0.9366 48 1 13.4301 -1.0641 2.7439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112531363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:04 Heat of formation + Delta-G solvation = -79.357163 kcal Electronic energy + Delta-G solvation = -29859.854515 eV Core-core repulsion = 25637.302245 eV Total energy + Delta-G solvation = -4222.552270 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.84441 -40.59537 -39.42728 -37.73016 -36.40182 -34.85784 -33.12500 -32.32488 -30.31346 -29.86242 -28.27444 -27.51015 -27.41848 -26.01043 -24.46363 -23.58209 -22.48403 -21.74538 -20.55662 -18.81350 -18.18890 -17.32422 -17.12404 -16.50642 -16.29984 -16.13551 -15.95920 -15.47709 -14.91045 -14.87237 -14.66967 -14.57215 -14.25721 -14.05447 -13.96119 -13.41596 -13.16414 -12.96247 -12.89469 -12.57461 -12.49518 -12.29096 -12.11512 -12.05737 -12.00596 -11.84536 -11.52233 -11.25768 -11.17413 -11.11382 -11.06302 -10.83137 -10.75688 -10.56346 -10.14186 -9.59102 -9.16905 -8.83615 -8.45300 -8.42060 -8.19656 -7.63457 -6.03321 -4.08009 0.98283 1.05764 2.96011 3.31167 3.35038 3.36717 3.39695 3.44977 3.78152 4.15776 4.22058 4.41344 4.46626 4.63214 4.70094 4.79605 4.89950 4.99078 5.03346 5.10504 5.13337 5.14606 5.29543 5.32065 5.42065 5.46520 5.54385 5.61443 5.66488 5.74279 5.88032 5.92622 5.93996 5.94863 6.01960 6.04525 6.16305 6.22177 6.50868 6.57064 6.94164 7.06564 7.15058 7.43563 7.47648 7.55116 7.93400 8.24234 8.41330 8.90601 9.07753 9.57286 11.04841 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.002689 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.099161 B =10408.397671 C =11331.602840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.311 6.311 3 C 0.118 3.882 4 C -0.183 4.183 5 C -0.121 4.121 6 C 0.061 3.939 7 F -0.141 7.141 8 C -0.090 4.090 9 C -0.067 4.067 10 C 0.130 3.870 11 H 0.096 0.904 12 C -0.177 4.177 13 N -0.666 5.666 14 C 0.069 3.931 15 H 0.063 0.937 16 C -0.143 4.143 17 C 0.504 3.496 18 O -0.535 6.535 19 N -0.599 5.599 20 C 0.069 3.931 21 C 0.245 3.755 22 C -0.525 4.525 23 H 0.058 0.942 24 C 0.060 3.940 25 N -0.895 5.895 26 Si 0.898 3.102 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.054 0.946 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.135 0.865 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.356 0.644 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.032 0.968 47 H 0.044 0.956 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.775 0.351 -6.919 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.224 6.224 3 C 0.072 3.928 4 C -0.202 4.202 5 C -0.140 4.140 6 C 0.042 3.958 7 F -0.120 7.120 8 C -0.109 4.109 9 C -0.068 4.068 10 C 0.020 3.980 11 H 0.114 0.886 12 C -0.235 4.235 13 N -0.301 5.301 14 C -0.044 4.044 15 H 0.081 0.919 16 C -0.201 4.201 17 C 0.290 3.710 18 O -0.412 6.412 19 N -0.331 5.331 20 C -0.075 4.075 21 C 0.125 3.875 22 C -0.564 4.564 23 H 0.077 0.923 24 C -0.141 4.141 25 N -0.534 5.534 26 Si 0.726 3.274 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.153 0.847 34 H 0.152 0.848 35 H 0.168 0.832 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.178 0.822 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -26.391 0.962 -6.507 27.199 hybrid contribution 0.390 0.156 0.236 0.482 sum -26.001 1.118 -6.272 26.770 Atomic orbital electron populations 1.23069 0.78482 1.04035 1.01295 1.86096 1.21184 1.26412 1.88717 1.18774 0.91490 0.84417 0.98069 1.20960 1.00082 0.91302 1.07883 1.20866 0.92728 0.98576 1.01823 1.17604 0.90734 0.80806 1.06668 1.91500 1.83348 1.42856 1.94270 1.20943 1.01649 0.89631 0.98651 1.18950 0.89805 0.95202 1.02865 1.20282 0.89903 0.93352 0.94435 0.88637 1.22461 1.02560 1.01595 0.96923 1.60457 1.03680 1.25651 1.40330 1.21438 0.92730 0.92304 0.97912 0.91934 1.21934 1.00433 1.03241 0.94466 1.20263 0.88187 0.84312 0.78246 1.90656 1.74296 1.27592 1.48643 1.48078 1.10092 1.08947 1.65996 1.21954 0.98670 0.86030 1.00853 1.19297 0.72610 0.97840 0.97717 1.21472 0.92399 1.46431 0.96091 0.92347 1.24938 0.96234 0.95308 0.97662 1.69944 1.00239 1.49434 1.33813 0.86442 0.78390 0.78283 0.84317 1.19749 1.20998 1.20866 0.92695 0.88173 0.92619 0.84720 0.84792 0.83190 0.91642 0.92149 0.92116 0.82153 0.91105 0.92416 0.90855 0.93783 0.90910 0.91058 0.95042 0.93759 0.92782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.84 9.64 -19.59 -0.19 -3.02 16 3 C 0.12 1.22 6.66 -39.23 -0.26 0.96 16 4 C -0.18 -1.62 9.04 -39.44 -0.36 -1.98 16 5 C -0.12 -1.18 10.02 -39.53 -0.40 -1.58 16 6 C 0.06 0.74 7.30 -39.42 -0.29 0.46 16 7 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 8 C -0.09 -1.14 9.30 -39.53 -0.37 -1.50 16 9 C -0.07 -0.79 5.07 -104.48 -0.53 -1.32 16 10 C 0.13 1.53 2.33 -68.86 -0.16 1.37 16 11 H 0.10 1.10 6.77 -51.93 -0.35 0.75 16 12 C -0.18 -1.84 9.13 37.15 0.34 -1.50 16 13 N -0.67 -9.63 4.91 -102.17 -0.50 -10.13 16 14 C 0.07 1.05 2.00 -68.87 -0.14 0.91 16 15 H 0.06 0.81 6.69 -51.93 -0.35 0.47 16 16 C -0.14 -1.99 8.83 37.16 0.33 -1.66 16 17 C 0.50 10.39 6.98 -10.98 -0.08 10.32 16 18 O -0.53 -13.29 15.28 5.56 0.08 -13.20 16 19 N -0.60 -12.62 2.86 -182.95 -0.52 -13.14 16 20 C 0.07 1.08 9.74 59.85 0.58 1.66 16 21 C 0.24 6.42 5.22 -5.19 -0.03 6.40 16 22 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 16 23 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 24 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 25 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 26 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 27 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 30 H 0.05 0.23 7.67 -51.93 -0.40 -0.17 16 31 H 0.10 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 33 H 0.14 0.81 6.30 -52.49 -0.33 0.48 16 34 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 2.03 6.89 -52.49 -0.36 1.67 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.06 0.63 7.43 -51.93 -0.39 0.24 16 39 H 0.36 5.59 6.71 -39.29 -0.26 5.33 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.06 0.66 7.57 -51.93 -0.39 0.27 16 42 H 0.07 1.00 5.41 -51.93 -0.28 0.72 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 45 H 0.07 0.91 4.11 -51.93 -0.21 0.70 16 46 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 47 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 48 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -33.80 391.97 -7.27 -41.07 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.03 Total: 3.37 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: -0.78 Total: 0.01 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.29 Total: -49.34 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.10 Total: -16.23 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.80 -7.27 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112531363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.288 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds