Wall clock time and date at job start Tue Mar 31 2020 22:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35952 * 117.00019 * 2 1 4 4 C 1.38733 * 120.02856 * 0.23711 * 3 2 1 5 5 C 1.38121 * 119.97053 * 180.31437 * 4 3 2 6 6 C 1.38481 * 120.02737 * 359.68231 * 5 4 3 7 7 F 1.35103 * 119.97002 * 180.02562 * 6 5 4 8 8 C 1.38437 * 120.06357 * 0.04086 * 6 5 4 9 9 C 1.38168 * 120.02437 * 0.02562 * 8 6 5 10 10 C 1.50710 * 120.01216 * 179.97438 * 9 8 6 11 11 H 1.09000 * 109.46875 * 145.00157 * 10 9 8 12 12 C 1.52991 * 109.47112 * 265.00415 * 10 9 8 13 13 N 1.46901 * 109.46951 * 25.00343 * 10 9 8 14 14 C 1.46893 * 111.00198 * 154.99649 * 13 10 9 15 15 H 1.09004 * 109.47276 * 35.00075 * 14 13 10 16 16 C 1.53000 * 109.47358 * 275.00066 * 14 13 10 17 17 C 1.50704 * 109.47356 * 154.99893 * 14 13 10 18 18 O 1.21281 * 119.99845 * 5.94058 * 17 14 13 19 19 N 1.34774 * 120.00038 * 185.94011 * 17 14 13 20 20 C 1.46508 * 120.00002 * 4.61499 * 19 17 14 21 21 C 1.46497 * 120.00059 * 184.61065 * 19 17 14 22 22 C 1.50708 * 109.46978 * 89.99957 * 21 19 17 23 23 H 1.08003 * 119.99878 * 0.02562 * 22 21 19 24 24 C 1.37870 * 120.00206 * 180.02562 * 22 21 19 25 25 N 1.31516 * 119.99997 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00100 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47218 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47658 * 119.99729 * 26 24 22 29 29 H 1.48503 * 109.47050 * 240.00122 * 26 24 22 30 30 H 1.08997 * 109.47280 * 60.00261 * 1 2 3 31 31 H 1.09009 * 109.47082 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47597 * 299.99628 * 1 2 3 33 33 H 1.08002 * 120.01128 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.98832 * 179.70256 * 5 4 3 35 35 H 1.07998 * 119.98565 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.47527 * 299.99505 * 12 10 9 37 37 H 1.09000 * 109.47462 * 60.00101 * 12 10 9 38 38 H 1.08999 * 109.46971 * 180.02562 * 12 10 9 39 39 H 1.00895 * 111.00065 * 278.95576 * 13 10 9 40 40 H 1.08996 * 109.47504 * 309.16786 * 16 14 13 41 41 H 1.09002 * 109.47369 * 69.17226 * 16 14 13 42 42 H 1.08999 * 109.47121 * 189.16413 * 16 14 13 43 43 H 1.09001 * 109.47080 * 95.84723 * 20 19 17 44 44 H 1.08998 * 109.46489 * 215.84334 * 20 19 17 45 45 H 1.08996 * 109.46943 * 335.84476 * 20 19 17 46 46 H 1.08994 * 109.47634 * 210.00081 * 21 19 17 47 47 H 1.09001 * 109.47404 * 330.00923 * 21 19 17 48 48 H 0.97000 * 120.00285 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2113 0.0000 4 6 1.2911 2.3752 0.0050 5 6 1.9194 3.6053 -0.0016 6 6 3.3023 3.6770 -0.0065 7 9 3.9157 4.8808 -0.0124 8 6 4.0570 2.5164 -0.0057 9 6 3.4310 1.2847 -0.0005 10 6 4.2528 0.0214 -0.0002 11 1 3.7473 -0.7407 0.5929 12 6 4.4207 -0.4781 -1.4365 13 7 5.5740 0.2969 0.5800 14 6 6.1676 -0.9240 1.1411 15 1 5.8866 -1.7799 0.5273 16 6 5.6565 -1.1303 2.5683 17 6 7.6686 -0.7903 1.1594 18 8 8.1876 0.2606 0.8476 19 7 8.4341 -1.8385 1.5222 20 6 7.8145 -3.1364 1.8010 21 6 9.8859 -1.6800 1.6377 22 6 10.2353 -1.2614 3.0427 23 1 9.4540 -1.1273 3.7763 24 6 11.5522 -1.0497 3.3917 25 7 12.5036 -1.2134 2.4986 26 14 11.9852 -0.5316 5.1333 27 1 10.7432 -0.4177 5.9392 28 1 12.8806 -1.5469 5.7438 29 1 12.6762 0.7826 5.1015 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.2126 2.3195 0.0093 34 1 1.3319 4.5115 -0.0026 35 1 5.1355 2.5739 -0.0099 36 1 3.4405 -0.6826 -1.8670 37 1 4.9263 0.2840 -2.0295 38 1 5.0147 -1.3920 -1.4362 39 1 6.1878 0.7172 -0.1016 40 1 5.7920 -0.2117 3.1392 41 1 4.5979 -1.3886 2.5415 42 1 6.2155 -1.9377 3.0413 43 1 7.8619 -3.7608 0.9088 44 1 8.3478 -3.6260 2.6158 45 1 6.7729 -2.9881 2.0857 46 1 10.3742 -2.6271 1.4088 47 1 10.2251 -0.9174 0.9366 48 1 13.4301 -1.0641 2.7439 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112531363.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:03 Heat of formation + Delta-G solvation = -101.683079 kcal Electronic energy + Delta-G solvation = -29860.822640 eV Core-core repulsion = 25637.302245 eV Total energy + Delta-G solvation = -4223.520394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.79899 -41.42317 -40.87514 -38.57541 -37.44270 -36.61878 -34.88223 -33.78806 -31.21993 -30.72024 -29.73450 -28.86467 -27.97686 -27.49805 -25.81650 -24.94121 -23.57596 -22.89591 -21.52819 -20.18785 -19.04193 -18.68266 -18.35759 -18.04301 -17.56629 -17.34137 -16.79098 -16.63297 -16.32076 -16.21513 -15.74401 -15.59348 -15.44797 -15.28226 -14.99259 -14.46366 -14.35040 -14.10883 -13.89703 -13.81051 -13.68644 -13.55176 -13.37012 -13.16501 -13.10697 -12.95169 -12.88101 -12.72176 -12.63346 -12.56936 -12.25583 -12.12945 -12.08618 -11.78803 -11.65865 -11.59526 -10.65775 -10.50614 -9.98644 -9.52977 -9.39139 -8.99939 -8.23335 -6.38019 0.18599 0.23485 1.35473 1.38403 1.50006 1.77739 2.26419 2.36968 2.40757 2.56028 3.06299 3.08305 3.32915 3.61199 3.64947 3.84786 4.05716 4.08708 4.19646 4.20138 4.27800 4.30993 4.39235 4.48894 4.50515 4.60307 4.68772 4.73073 4.75229 4.82822 4.84417 4.89267 4.95804 4.97256 5.00897 5.15266 5.19679 5.20307 5.22689 5.30098 5.36970 5.55144 5.74107 5.81911 6.02323 6.05284 6.26864 6.41575 6.69694 6.78141 7.27015 7.44928 8.84017 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015114 B = 0.002689 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.099161 B =10408.397671 C =11331.602840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.123 3.877 4 C -0.175 4.175 5 C -0.113 4.113 6 C 0.034 3.966 7 F -0.156 7.156 8 C -0.107 4.107 9 C -0.082 4.082 10 C 0.136 3.864 11 H 0.106 0.894 12 C -0.171 4.171 13 N -0.678 5.678 14 C 0.084 3.916 15 H 0.095 0.905 16 C -0.138 4.138 17 C 0.494 3.506 18 O -0.590 6.590 19 N -0.606 5.606 20 C 0.063 3.937 21 C 0.259 3.741 22 C -0.540 4.540 23 H 0.054 0.946 24 C 0.007 3.993 25 N -0.929 5.929 26 Si 0.967 3.033 27 H -0.266 1.266 28 H -0.268 1.268 29 H -0.283 1.283 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.066 0.934 33 H 0.170 0.830 34 H 0.158 0.842 35 H 0.127 0.873 36 H 0.078 0.922 37 H 0.049 0.951 38 H 0.063 0.937 39 H 0.345 0.655 40 H 0.045 0.955 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.107 0.893 46 H 0.024 0.976 47 H -0.003 1.003 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.475 -1.033 -6.002 31.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.077 3.923 4 C -0.193 4.193 5 C -0.132 4.132 6 C 0.014 3.986 7 F -0.135 7.135 8 C -0.126 4.126 9 C -0.084 4.084 10 C 0.027 3.973 11 H 0.124 0.876 12 C -0.229 4.229 13 N -0.312 5.312 14 C -0.029 4.029 15 H 0.113 0.887 16 C -0.196 4.196 17 C 0.282 3.718 18 O -0.470 6.470 19 N -0.337 5.337 20 C -0.078 4.078 21 C 0.137 3.863 22 C -0.579 4.579 23 H 0.072 0.928 24 C -0.192 4.192 25 N -0.569 5.569 26 Si 0.792 3.208 27 H -0.190 1.190 28 H -0.193 1.193 29 H -0.209 1.209 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.188 0.812 34 H 0.176 0.824 35 H 0.145 0.855 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.166 0.834 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.087 0.913 44 H 0.085 0.915 45 H 0.125 0.875 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -30.144 -0.475 -5.584 30.660 hybrid contribution 1.444 0.552 -0.112 1.550 sum -28.700 0.077 -5.697 29.260 Atomic orbital electron populations 1.23406 0.76267 1.05767 1.02487 1.86084 1.23431 1.25644 1.88316 1.18811 0.90981 0.85533 0.97006 1.21331 1.01717 0.90194 1.06082 1.21159 0.91605 1.00151 1.00289 1.17883 0.91959 0.80115 1.08598 1.91454 1.83827 1.43595 1.94603 1.20833 1.00790 0.90756 1.00223 1.18960 0.90873 0.94545 1.04001 1.20313 0.88252 0.93753 0.95025 0.87645 1.22401 1.03203 1.01257 0.96088 1.60497 1.04579 1.25443 1.40725 1.21405 0.88079 0.93824 0.99557 0.88737 1.21933 1.02572 1.02181 0.92879 1.21321 0.90605 0.83163 0.76680 1.90624 1.75847 1.29724 1.50837 1.48084 1.08243 1.11362 1.65987 1.22262 1.00044 0.83562 1.01963 1.18755 0.76173 0.95683 0.95684 1.21731 0.92655 1.46678 0.96837 0.92772 1.25861 0.96140 0.95125 1.02080 1.70059 1.00723 1.50149 1.35982 0.85369 0.78390 0.77964 0.79101 1.19046 1.19273 1.20922 0.91315 0.86371 0.91514 0.81228 0.82412 0.85478 0.90290 0.93177 0.91802 0.83381 0.93592 0.88952 0.90415 0.91310 0.91459 0.87525 0.95817 0.98461 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.74 9.64 -93.01 -0.90 -5.64 16 3 C 0.12 2.23 6.66 22.49 0.15 2.38 16 4 C -0.17 -2.54 9.04 22.36 0.20 -2.34 16 5 C -0.11 -2.00 10.02 22.30 0.22 -1.78 16 6 C 0.03 0.83 7.30 22.38 0.16 0.99 16 7 F -0.16 -4.36 17.27 44.97 0.78 -3.58 16 8 C -0.11 -2.82 9.30 22.30 0.21 -2.61 16 9 C -0.08 -1.88 5.07 -19.77 -0.10 -1.98 16 10 C 0.14 3.01 2.33 44.17 0.10 3.12 16 11 H 0.11 2.12 6.77 -2.39 -0.02 2.10 16 12 C -0.17 -3.34 9.13 71.98 0.66 -2.69 16 13 N -0.68 -19.76 4.91 -477.16 -2.34 -22.10 16 14 C 0.08 2.46 2.00 44.17 0.09 2.54 16 15 H 0.10 2.18 6.69 -2.38 -0.02 2.16 16 16 C -0.14 -3.56 8.83 71.98 0.64 -2.92 16 17 C 0.49 20.87 6.98 87.66 0.61 21.49 16 18 O -0.59 -31.11 15.28 -3.03 -0.05 -31.16 16 19 N -0.61 -25.91 2.86 -851.12 -2.43 -28.34 16 20 C 0.06 1.88 9.74 127.77 1.24 3.12 16 21 C 0.26 14.20 5.22 85.64 0.45 14.65 16 22 C -0.54 -31.64 9.39 25.60 0.24 -31.40 16 23 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 24 C 0.01 0.40 5.46 84.65 0.46 0.86 16 25 N -0.93 -57.12 13.29 21.44 0.28 -56.83 16 26 Si 0.97 45.74 29.54 68.60 2.03 47.77 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 29 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 30 H 0.07 0.26 7.67 -2.39 -0.02 0.24 16 31 H 0.12 0.33 8.14 -2.38 -0.02 0.31 16 32 H 0.07 0.29 7.65 -2.39 -0.02 0.27 16 33 H 0.17 1.23 6.30 -2.91 -0.02 1.21 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.13 3.83 6.89 -2.91 -0.02 3.81 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 38 H 0.06 1.20 7.43 -2.39 -0.02 1.18 16 39 H 0.35 11.50 6.71 -89.70 -0.60 10.90 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.09 1.76 7.57 -2.39 -0.02 1.75 16 42 H 0.08 1.93 5.41 -2.39 -0.01 1.91 16 43 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 45 H 0.11 2.38 4.11 -2.39 -0.01 2.37 16 46 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 47 H 0.00 -0.18 7.36 -2.39 -0.02 -0.19 16 48 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -78.33 391.97 4.20 -74.12 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.38 Total: 21.13 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.45 Total: 4.64 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -4.49 Total: -107.27 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -0.94 Total: -36.80 kcal Atomic # 9 Polarization: -4.36 SS G_CDS: 0.78 Total: -3.58 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -78.33 4.20 -74.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112531363.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.562 kcal (2) G-P(sol) polarization free energy of solvation -78.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds