Wall clock time and date at job start Tue Mar 31 2020 20:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46877 * 2 1 4 4 N 1.46503 * 109.46678 * 179.97438 * 3 2 1 5 5 C 1.36933 * 120.00036 * 264.00767 * 4 3 2 6 6 H 1.08001 * 120.00530 * 187.77194 * 5 4 3 7 7 C 1.38811 * 120.00008 * 7.77435 * 5 4 3 8 8 N 1.31628 * 119.99967 * 25.66568 * 7 5 4 9 9 Si 1.86796 * 120.00165 * 205.66161 * 7 5 4 10 10 H 1.48508 * 109.46849 * 84.99181 * 9 7 5 11 11 H 1.48506 * 109.47270 * 204.98731 * 9 7 5 12 12 H 1.48495 * 109.47260 * 324.99177 * 9 7 5 13 13 C 1.46503 * 120.00157 * 84.01867 * 4 3 2 14 14 C 1.50701 * 109.46579 * 269.99810 * 13 4 3 15 15 O 1.21275 * 120.00239 * 359.97438 * 14 13 4 16 16 N 1.34776 * 119.99701 * 179.97438 * 14 13 4 17 17 C 1.46503 * 119.99965 * 179.97438 * 16 14 13 18 18 C 1.53004 * 109.46951 * 180.02562 * 17 16 14 19 19 C 1.53004 * 109.46906 * 180.02562 * 18 17 16 20 20 O 1.42904 * 109.47056 * 180.02562 * 19 18 17 21 21 C 1.35956 * 116.99589 * 180.02562 * 20 19 18 22 22 C 1.38651 * 120.06644 * 359.96971 * 21 20 19 23 23 C 1.38184 * 119.97085 * 180.02562 * 22 21 20 24 24 C 1.38264 * 120.09346 * 0.02562 * 23 22 21 25 25 C 1.38252 * 120.12395 * 359.97438 * 24 23 22 26 26 C 1.38325 * 120.03384 * 0.02562 * 25 24 23 27 27 F 1.35098 * 120.05111 * 180.02562 * 26 25 24 28 28 H 1.09009 * 109.46889 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47733 * 300.00450 * 1 2 3 30 30 H 1.09004 * 109.47087 * 60.00849 * 1 2 3 31 31 H 1.08999 * 109.47244 * 239.99745 * 2 1 3 32 32 H 1.09000 * 109.46725 * 119.99788 * 2 1 3 33 33 H 1.08999 * 109.47392 * 59.99836 * 3 2 1 34 34 H 1.08997 * 109.46818 * 299.99221 * 3 2 1 35 35 H 0.96992 * 119.99739 * 180.02562 * 8 7 5 36 36 H 1.09002 * 109.47478 * 149.99419 * 13 4 3 37 37 H 1.09002 * 109.47270 * 29.99409 * 13 4 3 38 38 H 0.97004 * 120.00113 * 0.02562 * 16 14 13 39 39 H 1.08997 * 109.47281 * 60.00400 * 17 16 14 40 40 H 1.08998 * 109.47205 * 299.99726 * 17 16 14 41 41 H 1.09002 * 109.47421 * 59.99878 * 18 17 16 42 42 H 1.09002 * 109.47220 * 299.99934 * 18 17 16 43 43 H 1.09002 * 109.47221 * 59.99705 * 19 18 17 44 44 H 1.09002 * 109.47086 * 299.99965 * 19 18 17 45 45 H 1.08004 * 120.01997 * 0.05226 * 22 21 20 46 46 H 1.08005 * 119.95236 * 180.28269 * 23 22 21 47 47 H 1.08001 * 119.93248 * 179.97438 * 24 23 22 48 48 H 1.08004 * 119.98006 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1891 1.5664 1.1803 6 1 5.2617 1.6926 1.1719 7 6 3.5041 1.5298 2.3871 8 7 2.3517 0.8994 2.4708 9 14 4.2179 2.3750 3.8922 10 1 3.8358 3.8101 3.8818 11 1 3.6871 1.7305 5.1203 12 1 5.6979 2.2567 3.8712 13 6 4.2380 1.3100 -1.2609 14 6 4.4892 -0.1485 -1.5450 15 8 4.0952 -0.9939 -0.7699 16 7 5.1518 -0.5132 -2.6605 17 6 5.3966 -1.9311 -2.9365 18 6 6.1621 -2.0694 -4.2541 19 6 6.4171 -3.5502 -4.5426 20 8 7.1326 -3.6794 -5.7729 21 6 7.4409 -4.9400 -6.1781 22 6 7.0633 -6.0292 -5.4076 23 6 7.3781 -7.3096 -5.8210 24 6 8.0697 -7.5064 -7.0019 25 6 8.4481 -6.4232 -7.7732 26 6 8.1357 -5.1393 -7.3643 27 9 8.5049 -4.0806 -8.1180 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 1.6766 1.9562 -0.8900 35 1 1.8729 0.8742 3.3139 36 1 5.1904 1.8347 -1.1845 37 1 3.6493 1.7417 -2.0703 38 1 5.4673 0.1630 -3.2803 39 1 4.4444 -2.4561 -3.0123 40 1 5.9859 -2.3623 -2.1274 41 1 7.1143 -1.5444 -4.1779 42 1 5.5731 -1.6381 -5.0635 43 1 5.4647 -4.0748 -4.6189 44 1 7.0059 -3.9819 -3.7332 45 1 6.5229 -5.8770 -4.4849 46 1 7.0798 -8.1580 -5.2229 47 1 8.3148 -8.5082 -7.3224 48 1 8.9880 -6.5797 -8.6955 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350645147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:13 Heat of formation + Delta-G solvation = -88.989417 kcal Electronic energy + Delta-G solvation = -28407.436053 eV Core-core repulsion = 24184.466097 eV Total energy + Delta-G solvation = -4222.969956 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.84626 -41.07027 -40.43314 -38.59865 -37.69229 -36.22941 -33.73480 -33.42755 -32.85833 -31.68176 -30.70004 -28.81857 -27.34425 -26.62291 -24.24051 -23.61059 -23.27916 -22.43633 -21.79773 -21.05708 -19.50168 -18.71941 -18.14510 -17.76105 -17.60001 -17.55175 -17.13385 -16.66646 -16.45860 -16.13943 -15.85568 -15.56652 -15.40999 -15.31284 -14.94478 -14.69566 -14.53347 -14.48919 -13.84276 -13.73765 -13.45567 -13.36839 -13.16763 -12.91971 -12.80167 -12.71011 -12.58286 -12.50760 -12.42037 -12.22780 -12.00419 -11.94229 -11.83480 -11.71485 -11.54831 -11.05136 -10.65186 -10.21506 -9.96569 -9.88453 -9.25134 -8.78867 -7.74075 -5.06715 0.10792 0.24672 1.49954 1.51750 1.58826 1.84533 2.02243 2.50160 2.58967 2.62842 3.21898 3.34355 3.69625 3.73655 3.82861 3.83318 3.94092 4.05385 4.19346 4.30989 4.35777 4.36107 4.38327 4.54021 4.55653 4.64568 4.65769 4.67629 4.79646 4.90559 4.95667 4.96552 5.00700 5.08250 5.09183 5.24593 5.25599 5.42056 5.45911 5.58425 5.64717 5.65842 5.70110 5.94418 6.24552 6.32038 6.37842 6.82421 7.25420 7.63264 7.96190 8.33625 9.26533 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019802 B = 0.001779 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.633009 B =15731.794453 C =15945.336271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 C 0.175 3.825 4 N -0.588 5.588 5 C -0.256 4.256 6 H 0.072 0.928 7 C -0.053 4.053 8 N -0.908 5.908 9 Si 0.959 3.041 10 H -0.284 1.284 11 H -0.303 1.303 12 H -0.277 1.277 13 C 0.125 3.875 14 C 0.470 3.530 15 O -0.564 6.564 16 N -0.729 5.729 17 C 0.128 3.872 18 C -0.114 4.114 19 C 0.061 3.939 20 O -0.327 6.327 21 C 0.078 3.922 22 C -0.191 4.191 23 C -0.087 4.087 24 C -0.126 4.126 25 C -0.117 4.117 26 C 0.032 3.968 27 F -0.150 7.150 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.017 0.983 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.027 0.973 35 H 0.243 0.757 36 H 0.093 0.907 37 H 0.100 0.900 38 H 0.413 0.587 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.086 0.914 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.150 0.850 46 H 0.160 0.840 47 H 0.166 0.834 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.730 -13.744 -21.869 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.145 4.145 3 C 0.050 3.950 4 N -0.306 5.306 5 C -0.385 4.385 6 H 0.089 0.911 7 C -0.248 4.248 8 N -0.554 5.554 9 Si 0.788 3.212 10 H -0.211 1.211 11 H -0.230 1.230 12 H -0.203 1.203 13 C -0.006 4.006 14 C 0.255 3.745 15 O -0.440 6.440 16 N -0.386 5.386 17 C 0.004 3.996 18 C -0.151 4.151 19 C -0.014 4.014 20 O -0.241 6.241 21 C 0.032 3.968 22 C -0.209 4.209 23 C -0.105 4.105 24 C -0.144 4.144 25 C -0.135 4.135 26 C 0.012 3.988 27 F -0.129 7.129 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.249 0.751 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.094 0.906 45 H 0.167 0.833 46 H 0.178 0.822 47 H 0.183 0.817 48 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.387 -14.095 -21.248 27.170 hybrid contribution 0.380 0.514 0.885 1.092 sum 9.767 -13.581 -20.362 26.353 Atomic orbital electron populations 1.21580 0.96660 1.00048 1.00517 1.21797 0.93961 0.99377 0.99383 1.20870 0.81609 0.94701 0.97853 1.44374 1.02287 1.82033 1.01937 1.19449 0.92181 1.42125 0.84795 0.91064 1.25428 0.98574 1.01128 0.99692 1.70413 1.18100 1.42246 1.24642 0.85410 0.77750 0.78682 0.79339 1.21126 1.22994 1.20281 1.21189 0.99050 0.90291 0.90079 1.23347 0.76401 0.94738 0.79985 1.90684 1.50994 1.54193 1.48134 1.46133 1.59444 1.08108 1.24871 1.20967 0.99208 0.83403 0.96060 1.21520 1.02005 0.95010 0.96612 1.22813 0.96467 0.98155 0.83968 1.86055 1.72218 1.24582 1.41286 1.19300 0.97960 0.85356 0.94206 1.21498 1.05232 0.92346 1.01843 1.21481 0.95833 0.96682 0.96469 1.21374 0.98805 0.99749 0.94499 1.21361 1.00737 0.89303 1.02145 1.17484 1.05088 0.85177 0.91005 1.91450 1.90155 1.56110 1.75212 0.94000 0.94059 0.92683 0.96469 0.93028 0.92009 0.95531 0.94754 0.88862 0.88174 0.75089 0.92754 0.93095 0.89522 0.89312 0.90440 0.90616 0.83270 0.82241 0.81652 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.27 9.91 71.98 0.71 -4.56 16 2 C -0.11 -5.19 4.74 30.59 0.14 -5.04 16 3 C 0.17 8.52 4.92 86.38 0.43 8.94 16 4 N -0.59 -28.94 2.12 -706.33 -1.49 -30.43 16 5 C -0.26 -14.03 9.70 84.03 0.82 -13.21 16 6 H 0.07 3.83 7.94 -2.91 -0.02 3.81 16 7 C -0.05 -2.97 4.89 84.86 0.42 -2.56 16 8 N -0.91 -53.23 8.63 21.65 0.19 -53.04 16 9 Si 0.96 45.67 29.62 68.60 2.03 47.70 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 12 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.12 4.68 6.19 85.63 0.53 5.21 16 14 C 0.47 18.08 7.54 87.66 0.66 18.74 16 15 O -0.56 -28.24 14.04 -3.01 -0.04 -28.29 16 16 N -0.73 -19.47 5.56 -463.06 -2.57 -22.05 16 17 C 0.13 3.08 5.67 86.38 0.49 3.57 16 18 C -0.11 -1.95 5.70 30.60 0.17 -1.78 16 19 C 0.06 1.04 4.74 71.98 0.34 1.38 16 20 O -0.33 -7.14 10.00 -93.06 -0.93 -8.07 16 21 C 0.08 1.57 6.69 22.53 0.15 1.72 16 22 C -0.19 -2.84 9.04 22.36 0.20 -2.64 16 23 C -0.09 -0.91 10.04 22.26 0.22 -0.69 16 24 C -0.13 -1.20 10.04 22.28 0.22 -0.98 16 25 C -0.12 -1.56 10.02 22.29 0.22 -1.34 16 26 C 0.03 0.65 7.31 22.45 0.16 0.81 16 27 F -0.15 -3.61 17.11 44.97 0.77 -2.84 16 28 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.02 0.83 6.42 -2.39 -0.02 0.82 16 32 H 0.05 3.06 6.36 -2.39 -0.02 3.04 16 33 H 0.06 3.38 5.82 -2.39 -0.01 3.37 16 34 H 0.03 1.14 7.98 -2.39 -0.02 1.12 16 35 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 36 H 0.09 3.12 8.03 -2.39 -0.02 3.10 16 37 H 0.10 3.07 7.95 -2.39 -0.02 3.05 16 38 H 0.41 7.86 8.47 -92.70 -0.79 7.07 16 39 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 44 H 0.08 1.16 7.66 -2.39 -0.02 1.14 16 45 H 0.15 1.81 6.30 -2.91 -0.02 1.79 16 46 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 47 H 0.17 0.50 8.06 -2.91 -0.02 0.48 16 48 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 Total: -1.00 -76.12 395.63 4.03 -72.10 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.18 Total: 17.35 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.90 Total: 7.57 kcal Atomic # 7 Polarization: -101.64 SS G_CDS: -3.88 Total: -105.52 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.97 Total: -36.36 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.77 Total: -2.84 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -76.12 4.03 -72.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350645147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.890 kcal (2) G-P(sol) polarization free energy of solvation -76.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds