Wall clock time and date at job start Tue Mar 31 2020 20:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.08994 * 109.46948 * 304.99775 * 3 2 1 5 5 C 1.53000 * 109.46782 * 184.99926 * 3 2 1 6 6 N 1.46500 * 109.47010 * 179.97438 * 5 3 2 7 7 C 1.34780 * 119.99788 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99772 * 179.97438 * 7 6 5 10 10 H 1.09009 * 109.46840 * 40.00299 * 9 7 6 11 11 N 1.46894 * 109.47078 * 160.00079 * 9 7 6 12 12 C 1.53000 * 109.47088 * 280.00411 * 9 7 6 13 13 C 1.53000 * 109.47000 * 175.00171 * 12 9 7 14 14 C 1.50700 * 109.47236 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99697 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00062 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00242 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46975 * 90.00504 * 18 16 14 20 20 H 1.48494 * 109.47308 * 210.00451 * 18 16 14 21 21 H 1.48499 * 109.47208 * 330.00978 * 18 16 14 22 22 O 1.42899 * 109.47263 * 64.99951 * 3 2 1 23 23 C 1.35957 * 116.99768 * 265.89155 * 22 3 2 24 24 C 1.38656 * 120.06178 * 357.66196 * 23 22 3 25 25 C 1.38189 * 119.96467 * 180.02562 * 24 23 22 26 26 C 1.38258 * 120.09463 * 359.95901 * 25 24 23 27 27 C 1.38257 * 120.12875 * 0.02562 * 26 25 24 28 28 C 1.38328 * 120.02799 * 359.97438 * 27 26 25 29 29 F 1.35101 * 120.04455 * 179.72751 * 28 27 26 30 30 H 1.09000 * 109.46750 * 59.99829 * 1 2 3 31 31 H 1.08996 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47031 * 300.00392 * 1 2 3 33 33 H 1.09001 * 109.47031 * 239.99608 * 2 1 3 34 34 H 1.09003 * 109.47002 * 119.99440 * 2 1 3 35 35 H 1.09004 * 109.47354 * 300.00198 * 5 3 2 36 36 H 1.08997 * 109.47348 * 59.99795 * 5 3 2 37 37 H 0.96996 * 119.99862 * 0.02562 * 6 5 3 38 38 H 1.00900 * 111.00128 * 296.04776 * 11 9 7 39 39 H 1.00905 * 111.00237 * 60.00000 * 11 9 7 40 40 H 1.08999 * 109.46907 * 294.99609 * 12 9 7 41 41 H 1.08996 * 109.47065 * 55.00049 * 12 9 7 42 42 H 1.09005 * 109.46862 * 299.99906 * 13 12 9 43 43 H 1.09000 * 109.47383 * 59.99531 * 13 12 9 44 44 H 0.96996 * 120.00199 * 179.97438 * 17 16 14 45 45 H 1.07992 * 120.02170 * 0.02562 * 24 23 22 46 46 H 1.08003 * 119.94870 * 179.97438 * 25 24 23 47 47 H 1.08006 * 119.93139 * 180.02562 * 26 25 24 48 48 H 1.08002 * 119.98335 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0532 2.8255 -0.1263 7 6 5.3741 3.0732 -0.2276 8 8 6.1584 2.1526 -0.3187 9 6 5.8764 4.4941 -0.2289 10 1 5.3120 5.0796 0.4970 11 7 7.3007 4.5102 0.1303 12 6 5.6950 5.0979 -1.6229 13 6 6.0883 6.5762 -1.5934 14 6 5.9103 7.1709 -2.9667 15 1 5.5520 6.5560 -3.7791 16 6 6.2037 8.5001 -3.1856 17 7 6.6396 9.2490 -2.1962 18 14 5.9837 9.2370 -4.8880 19 1 4.6063 9.7763 -5.0196 20 1 6.9655 10.3339 -5.0832 21 1 6.2042 8.1867 -5.9143 22 8 1.6620 2.0814 1.2210 23 6 0.5050 2.7955 1.2115 24 6 -0.2250 2.9195 0.0392 25 6 -1.4004 3.6462 0.0317 26 6 -1.8501 4.2492 1.1918 27 6 -1.1254 4.1278 2.3629 28 6 0.0519 3.4016 2.3763 29 9 0.7632 3.2874 3.5192 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.9995 0.9052 0.7161 36 1 3.8532 0.9569 -1.0570 37 1 3.4259 3.5617 -0.0531 38 1 7.4399 4.1760 1.0721 39 1 7.8458 3.9738 -0.5280 40 1 6.3286 4.5675 -2.3338 41 1 4.6522 5.0053 -1.9260 42 1 5.4548 7.1066 -0.8824 43 1 7.1312 6.6688 -1.2902 44 1 6.8464 10.1840 -2.3504 45 1 0.1247 2.4485 -0.8674 46 1 -1.9686 3.7429 -0.8816 47 1 -2.7693 4.8162 1.1830 48 1 -1.4786 4.6002 3.2676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424119359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:44 Heat of formation + Delta-G solvation = -108.877943 kcal Electronic energy + Delta-G solvation = -29482.910825 eV Core-core repulsion = 25259.078438 eV Total energy + Delta-G solvation = -4223.832387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.97775 -40.88003 -39.66555 -38.10325 -35.43929 -34.95824 -33.75392 -32.78536 -31.08345 -30.43810 -30.08432 -28.96569 -26.37661 -24.50395 -23.87377 -22.83970 -22.82983 -21.16543 -20.58179 -19.73867 -19.10386 -17.52673 -17.17585 -16.83168 -16.46313 -16.27006 -16.00297 -15.71819 -15.47308 -15.14768 -14.88995 -14.77448 -14.50149 -14.29443 -14.15284 -13.72002 -13.46092 -13.30034 -13.15275 -13.02317 -12.45916 -12.45849 -12.30606 -12.07225 -11.99950 -11.76980 -11.65670 -11.51585 -11.23730 -10.89663 -10.86784 -10.66738 -10.55194 -10.13283 -9.79788 -9.36999 -9.26440 -9.11551 -8.98841 -8.50898 -8.34355 -8.19598 -5.93252 -3.95584 0.77781 0.90930 2.61028 2.78386 3.17233 3.23197 3.34177 3.40849 3.44051 3.90929 4.16110 4.26719 4.40051 4.48083 4.50103 4.53015 4.73347 4.87796 4.88703 4.90677 4.98653 5.08141 5.15568 5.22028 5.34197 5.42136 5.49004 5.52355 5.55729 5.56518 5.66757 5.70590 5.80347 5.84485 5.84675 6.04126 6.29662 6.35954 6.44398 6.65198 6.94871 7.09014 7.37126 7.58020 7.76795 7.82033 7.96991 8.13981 8.29674 8.48733 9.12419 9.67448 11.17645 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009722 B = 0.002862 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.308800 B = 9780.801093 C =11043.486299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.142 4.142 3 C 0.068 3.932 4 H 0.088 0.912 5 C 0.122 3.878 6 N -0.728 5.728 7 C 0.485 3.515 8 O -0.554 6.554 9 C 0.078 3.922 10 H 0.098 0.902 11 N -0.806 5.806 12 C -0.094 4.094 13 C 0.031 3.969 14 C -0.522 4.522 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 O -0.295 6.295 23 C 0.101 3.899 24 C -0.185 4.185 25 C -0.088 4.088 26 C -0.130 4.130 27 C -0.116 4.116 28 C 0.067 3.933 29 F -0.132 7.132 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.404 0.596 38 H 0.334 0.666 39 H 0.347 0.653 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.013 0.987 43 H 0.035 0.965 44 H 0.259 0.741 45 H 0.142 0.858 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.096 -17.333 7.533 26.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.180 4.180 3 C 0.012 3.988 4 H 0.106 0.894 5 C -0.003 4.003 6 N -0.381 5.381 7 C 0.271 3.729 8 O -0.432 6.432 9 C -0.038 4.038 10 H 0.116 0.884 11 N -0.334 5.334 12 C -0.133 4.133 13 C -0.006 4.006 14 C -0.561 4.561 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.531 5.531 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.212 1.212 21 H -0.200 1.200 22 O -0.209 6.209 23 C 0.055 3.945 24 C -0.203 4.203 25 C -0.106 4.106 26 C -0.148 4.148 27 C -0.135 4.135 28 C 0.047 3.953 29 F -0.111 7.111 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.238 0.762 38 H 0.146 0.854 39 H 0.161 0.839 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.054 0.946 44 H 0.069 0.931 45 H 0.160 0.840 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -18.305 -17.066 7.597 26.154 hybrid contribution -0.566 -0.315 -0.757 0.996 sum -18.871 -17.381 6.840 26.551 Atomic orbital electron populations 1.21943 0.94875 1.02422 1.02247 1.21979 0.97040 0.94924 1.04022 1.22958 0.95152 0.94214 0.86525 0.89387 1.21455 0.90375 0.85195 1.03242 1.46059 1.08433 1.07980 1.75653 1.22771 0.81672 0.94257 0.74193 1.90642 1.55467 1.47007 1.50094 1.21842 0.90654 0.89119 1.02140 0.88431 1.58995 1.05312 1.61930 1.07168 1.21651 1.00193 1.00861 0.90567 1.19019 0.98202 0.87018 0.96381 1.21272 1.44077 0.94982 0.95749 0.93019 1.24993 0.95407 0.97335 0.96602 1.69976 1.45180 1.06907 1.31059 0.86653 0.77778 0.78913 0.84975 1.20794 1.21249 1.19986 1.86250 1.36162 1.62630 1.35841 1.18988 0.87866 0.94242 0.93413 1.21294 0.97439 1.04403 0.97196 1.21037 0.95319 0.95598 0.98643 1.20954 1.00739 1.01172 0.91925 1.21057 0.93271 0.98863 1.00330 1.17019 0.93415 1.03890 0.80990 1.91518 1.77505 1.94714 1.47345 0.92279 0.92052 0.92235 0.89723 0.90280 0.90541 0.89515 0.76185 0.85405 0.83853 0.92826 0.92956 0.96877 0.94628 0.93092 0.84042 0.84981 0.84831 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 8.45 37.16 0.31 -0.68 16 2 C -0.14 -0.96 5.64 -26.73 -0.15 -1.11 16 3 C 0.07 0.58 2.25 -26.73 -0.06 0.52 16 4 H 0.09 0.66 5.38 -51.93 -0.28 0.38 16 5 C 0.12 1.30 5.37 -4.04 -0.02 1.28 16 6 N -0.73 -9.39 5.45 -60.29 -0.33 -9.72 16 7 C 0.49 7.79 7.07 -10.98 -0.08 7.71 16 8 O -0.55 -10.27 16.25 5.56 0.09 -10.18 16 9 C 0.08 1.35 3.15 -68.86 -0.22 1.13 16 10 H 0.10 1.63 8.14 -51.92 -0.42 1.20 16 11 N -0.81 -13.99 8.44 -5.65 -0.05 -14.04 16 12 C -0.09 -1.92 4.78 -26.73 -0.13 -2.04 16 13 C 0.03 0.79 4.86 -27.88 -0.14 0.66 16 14 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 15 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 O -0.30 -3.18 9.28 -19.61 -0.18 -3.36 16 23 C 0.10 1.03 5.33 -39.18 -0.21 0.82 16 24 C -0.18 -1.49 7.16 -39.45 -0.28 -1.77 16 25 C -0.09 -0.62 10.04 -39.59 -0.40 -1.02 16 26 C -0.13 -0.92 10.04 -39.57 -0.40 -1.31 16 27 C -0.12 -0.98 10.02 -39.54 -0.40 -1.38 16 28 C 0.07 0.72 7.31 -39.30 -0.29 0.44 16 29 F -0.13 -1.69 17.11 2.25 0.04 -1.65 16 30 H 0.06 0.32 6.80 -51.93 -0.35 -0.03 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.46 6.27 -51.93 -0.33 0.13 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.40 4.82 8.35 -40.82 -0.34 4.48 16 38 H 0.33 5.10 9.06 -39.29 -0.36 4.75 16 39 H 0.35 6.06 8.58 -39.29 -0.34 5.72 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.14 0.93 4.54 -52.49 -0.24 0.69 16 46 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 47 H 0.13 0.63 8.06 -52.48 -0.42 0.21 16 48 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 396.95 15.07 5.98 5.98 Total: -1.00 -33.92 396.95 -8.84 -42.75 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -7.25 Total: 10.08 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -2.86 Total: -10.29 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.36 Total: -50.03 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.09 Total: -13.54 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.92 -8.84 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.124 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds