Wall clock time and date at job start Tue Mar 31 2020 20:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.47070 * 2 1 4 4 H 1.08994 * 109.46948 * 304.99775 * 3 2 1 5 5 C 1.53000 * 109.46782 * 184.99926 * 3 2 1 6 6 N 1.46500 * 109.47010 * 179.97438 * 5 3 2 7 7 C 1.34780 * 119.99788 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99772 * 179.97438 * 7 6 5 10 10 H 1.09009 * 109.46840 * 40.00299 * 9 7 6 11 11 N 1.46894 * 109.47078 * 160.00079 * 9 7 6 12 12 C 1.53000 * 109.47088 * 280.00411 * 9 7 6 13 13 C 1.53000 * 109.47000 * 175.00171 * 12 9 7 14 14 C 1.50700 * 109.47236 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99697 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00062 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00242 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00074 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46975 * 90.00504 * 18 16 14 20 20 H 1.48494 * 109.47308 * 210.00451 * 18 16 14 21 21 H 1.48499 * 109.47208 * 330.00978 * 18 16 14 22 22 O 1.42899 * 109.47263 * 64.99951 * 3 2 1 23 23 C 1.35957 * 116.99768 * 265.89155 * 22 3 2 24 24 C 1.38656 * 120.06178 * 357.66196 * 23 22 3 25 25 C 1.38189 * 119.96467 * 180.02562 * 24 23 22 26 26 C 1.38258 * 120.09463 * 359.95901 * 25 24 23 27 27 C 1.38257 * 120.12875 * 0.02562 * 26 25 24 28 28 C 1.38328 * 120.02799 * 359.97438 * 27 26 25 29 29 F 1.35101 * 120.04455 * 179.72751 * 28 27 26 30 30 H 1.09000 * 109.46750 * 59.99829 * 1 2 3 31 31 H 1.08996 * 109.47338 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47031 * 300.00392 * 1 2 3 33 33 H 1.09001 * 109.47031 * 239.99608 * 2 1 3 34 34 H 1.09003 * 109.47002 * 119.99440 * 2 1 3 35 35 H 1.09004 * 109.47354 * 300.00198 * 5 3 2 36 36 H 1.08997 * 109.47348 * 59.99795 * 5 3 2 37 37 H 0.96996 * 119.99862 * 0.02562 * 6 5 3 38 38 H 1.00900 * 111.00128 * 296.04776 * 11 9 7 39 39 H 1.00905 * 111.00237 * 60.00000 * 11 9 7 40 40 H 1.08999 * 109.46907 * 294.99609 * 12 9 7 41 41 H 1.08996 * 109.47065 * 55.00049 * 12 9 7 42 42 H 1.09005 * 109.46862 * 299.99906 * 13 12 9 43 43 H 1.09000 * 109.47383 * 59.99531 * 13 12 9 44 44 H 0.96996 * 120.00199 * 179.97438 * 17 16 14 45 45 H 1.07992 * 120.02170 * 0.02562 * 24 23 22 46 46 H 1.08003 * 119.94870 * 179.97438 * 25 24 23 47 47 H 1.08006 * 119.93139 * 180.02562 * 26 25 24 48 48 H 1.08002 * 119.98335 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 4.0532 2.8255 -0.1263 7 6 5.3741 3.0732 -0.2276 8 8 6.1584 2.1526 -0.3187 9 6 5.8764 4.4941 -0.2289 10 1 5.3120 5.0796 0.4970 11 7 7.3007 4.5102 0.1303 12 6 5.6950 5.0979 -1.6229 13 6 6.0883 6.5762 -1.5934 14 6 5.9103 7.1709 -2.9667 15 1 5.5520 6.5560 -3.7791 16 6 6.2037 8.5001 -3.1856 17 7 6.6396 9.2490 -2.1962 18 14 5.9837 9.2370 -4.8880 19 1 4.6063 9.7763 -5.0196 20 1 6.9655 10.3339 -5.0832 21 1 6.2042 8.1867 -5.9143 22 8 1.6620 2.0814 1.2210 23 6 0.5050 2.7955 1.2115 24 6 -0.2250 2.9195 0.0392 25 6 -1.4004 3.6462 0.0317 26 6 -1.8501 4.2492 1.1918 27 6 -1.1254 4.1278 2.3629 28 6 0.0519 3.4016 2.3763 29 9 0.7632 3.2874 3.5192 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8901 35 1 3.9995 0.9052 0.7161 36 1 3.8532 0.9569 -1.0570 37 1 3.4259 3.5617 -0.0531 38 1 7.4399 4.1760 1.0721 39 1 7.8458 3.9738 -0.5280 40 1 6.3286 4.5675 -2.3338 41 1 4.6522 5.0053 -1.9260 42 1 5.4548 7.1066 -0.8824 43 1 7.1312 6.6688 -1.2902 44 1 6.8464 10.1840 -2.3504 45 1 0.1247 2.4485 -0.8674 46 1 -1.9686 3.7429 -0.8816 47 1 -2.7693 4.8162 1.1830 48 1 -1.4786 4.6002 3.2676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424119359.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:44 Heat of formation + Delta-G solvation = -132.123881 kcal Electronic energy + Delta-G solvation = -29483.918845 eV Core-core repulsion = 25259.078438 eV Total energy + Delta-G solvation = -4224.840407 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.81797 -41.63531 -40.87290 -38.77456 -36.88951 -36.08829 -34.81422 -34.49503 -31.94189 -31.70445 -31.09055 -29.82956 -28.00506 -25.83147 -24.64725 -23.99354 -23.47259 -22.30439 -21.85870 -21.03325 -19.78248 -18.78614 -18.18378 -17.94815 -17.71668 -17.29136 -17.14952 -16.84629 -16.44383 -16.38613 -15.94906 -15.87009 -15.49914 -15.46738 -15.09748 -14.72953 -14.55766 -14.27707 -14.18558 -13.88782 -13.80528 -13.74834 -13.42938 -13.08752 -13.03672 -12.78740 -12.63409 -12.51673 -12.36241 -12.29147 -12.22112 -11.90322 -11.74222 -11.65342 -11.45210 -11.26343 -11.00313 -10.48634 -10.23117 -9.89147 -9.65735 -9.17522 -8.12951 -6.23710 0.14944 0.28518 1.42097 1.44165 1.46802 1.54982 1.92673 2.10016 2.45433 2.62300 3.20045 3.24681 3.44973 3.53680 3.63634 3.75009 3.87130 3.88122 3.96643 4.08258 4.20943 4.28288 4.30585 4.34142 4.41582 4.45757 4.62050 4.63560 4.76567 4.77975 4.92683 4.96271 5.03316 5.10985 5.12677 5.24324 5.27553 5.28891 5.32771 5.46312 5.57436 5.71507 5.83860 5.98603 6.06444 6.28655 6.30270 6.36131 6.49817 6.94977 7.05991 7.44582 8.98400 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009722 B = 0.002862 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.308800 B = 9780.801093 C =11043.486299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.138 4.138 3 C 0.072 3.928 4 H 0.104 0.896 5 C 0.120 3.880 6 N -0.716 5.716 7 C 0.491 3.509 8 O -0.579 6.579 9 C 0.084 3.916 10 H 0.103 0.897 11 N -0.818 5.818 12 C -0.080 4.080 13 C 0.039 3.961 14 C -0.543 4.543 15 H 0.058 0.942 16 C 0.000 4.000 17 N -0.931 5.931 18 Si 0.961 3.039 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.265 1.265 22 O -0.317 6.317 23 C 0.088 3.912 24 C -0.186 4.186 25 C -0.085 4.085 26 C -0.128 4.128 27 C -0.121 4.121 28 C 0.028 3.972 29 F -0.154 7.154 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.103 0.897 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.410 0.590 38 H 0.346 0.654 39 H 0.346 0.654 40 H 0.046 0.954 41 H 0.068 0.932 42 H -0.009 1.009 43 H 0.005 0.995 44 H 0.262 0.738 45 H 0.158 0.842 46 H 0.161 0.839 47 H 0.161 0.839 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.372 -17.862 5.517 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.176 4.176 3 C 0.016 3.984 4 H 0.121 0.879 5 C -0.004 4.004 6 N -0.368 5.368 7 C 0.276 3.724 8 O -0.459 6.459 9 C -0.032 4.032 10 H 0.121 0.879 11 N -0.347 5.347 12 C -0.118 4.118 13 C 0.001 3.999 14 C -0.581 4.581 15 H 0.076 0.924 16 C -0.197 4.197 17 N -0.571 5.571 18 Si 0.786 3.214 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.189 1.189 22 O -0.231 6.231 23 C 0.042 3.958 24 C -0.204 4.204 25 C -0.103 4.103 26 C -0.146 4.146 27 C -0.139 4.139 28 C 0.009 3.991 29 F -0.133 7.133 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.115 0.885 37 H 0.245 0.755 38 H 0.159 0.841 39 H 0.160 0.840 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.009 0.991 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.175 0.825 46 H 0.178 0.822 47 H 0.179 0.821 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.624 -17.612 5.591 27.691 hybrid contribution 0.089 -0.142 -0.093 0.192 sum -20.535 -17.754 5.497 27.697 Atomic orbital electron populations 1.21915 0.94277 1.02938 1.02025 1.21977 0.97474 0.93671 1.04471 1.23010 0.93487 0.95432 0.86450 0.87877 1.21616 0.91972 0.83516 1.03268 1.45977 1.07416 1.09427 1.73939 1.22308 0.82537 0.93121 0.74396 1.90634 1.56332 1.47342 1.51620 1.21635 0.90953 0.90176 1.00420 0.87915 1.58969 1.05481 1.62315 1.07953 1.21380 1.00758 0.97260 0.92416 1.18830 0.95880 0.90299 0.94843 1.21725 1.43909 0.95559 0.96897 0.92388 1.25933 0.94955 0.97928 1.00928 1.70118 1.46198 1.07299 1.33510 0.85509 0.78102 0.78038 0.79749 1.19559 1.21079 1.18930 1.86212 1.36830 1.63116 1.36975 1.19155 0.88086 0.94601 0.93993 1.21518 0.97588 1.04455 0.96881 1.21453 0.94842 0.94259 0.99702 1.21336 1.01286 1.00728 0.91260 1.21325 0.92578 0.98353 1.01664 1.17503 0.94727 1.06052 0.80864 1.91450 1.78194 1.95101 1.48517 0.90974 0.91198 0.93901 0.87887 0.91222 0.91644 0.88539 0.75488 0.84132 0.83980 0.93542 0.91361 0.99053 0.97670 0.92959 0.82463 0.82172 0.82111 0.82876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.45 71.98 0.61 -1.04 16 2 C -0.14 -1.64 5.64 30.60 0.17 -1.47 16 3 C 0.07 1.12 2.25 30.60 0.07 1.19 16 4 H 0.10 1.28 5.38 -2.39 -0.01 1.27 16 5 C 0.12 2.43 5.37 86.38 0.46 2.89 16 6 N -0.72 -17.77 5.45 -463.05 -2.52 -20.29 16 7 C 0.49 15.48 7.07 87.66 0.62 16.10 16 8 O -0.58 -21.20 16.25 -3.02 -0.05 -21.24 16 9 C 0.08 2.89 3.15 44.17 0.14 3.03 16 10 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 11 N -0.82 -28.76 8.44 -171.79 -1.45 -30.21 16 12 C -0.08 -3.23 4.78 30.59 0.15 -3.08 16 13 C 0.04 2.03 4.86 29.85 0.15 2.17 16 14 C -0.54 -30.78 9.11 25.60 0.23 -30.55 16 15 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 16 C 0.00 0.01 5.46 84.65 0.46 0.48 16 17 N -0.93 -57.10 13.29 21.45 0.28 -56.81 16 18 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 22 O -0.32 -6.76 9.28 -93.07 -0.86 -7.62 16 23 C 0.09 1.74 5.33 22.53 0.12 1.86 16 24 C -0.19 -2.61 7.16 22.36 0.16 -2.45 16 25 C -0.08 -0.94 10.04 22.26 0.22 -0.72 16 26 C -0.13 -1.50 10.04 22.28 0.22 -1.27 16 27 C -0.12 -1.94 10.02 22.30 0.22 -1.72 16 28 C 0.03 0.62 7.31 22.45 0.16 0.78 16 29 F -0.15 -4.15 17.11 44.97 0.77 -3.38 16 30 H 0.07 0.57 6.80 -2.39 -0.02 0.55 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.04 0.61 6.27 -2.39 -0.01 0.60 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.41 9.34 8.35 -92.71 -0.77 8.56 16 38 H 0.35 10.64 9.06 -89.69 -0.81 9.82 16 39 H 0.35 12.25 8.58 -89.69 -0.77 11.48 16 40 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 43 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 44 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.16 1.59 4.54 -2.91 -0.01 1.57 16 46 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 47 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 48 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -74.28 396.95 1.02 -73.26 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -1.35 Total: 33.86 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 4.17 Total: -13.79 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -3.69 Total: -107.31 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.91 Total: -28.86 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.77 Total: -3.38 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -74.28 1.02 -73.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424119359.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.862 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds