Wall clock time and date at job start Tue Mar 31 2020 20:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47144 * 2 1 4 4 H 1.09000 * 109.47011 * 304.99393 * 3 2 1 5 5 C 1.53001 * 109.47043 * 184.99729 * 3 2 1 6 6 N 1.46497 * 109.47249 * 179.97438 * 5 3 2 7 7 C 1.34770 * 120.00410 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00124 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00479 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47048 * 320.00347 * 9 7 6 11 11 N 1.46901 * 109.47348 * 199.99998 * 9 7 6 12 12 C 1.53003 * 109.46850 * 80.00087 * 9 7 6 13 13 C 1.53001 * 109.46878 * 185.00452 * 12 9 7 14 14 C 1.50703 * 109.47153 * 179.97438 * 13 12 9 15 15 H 1.07994 * 119.99775 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99981 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00062 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00056 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47478 * 89.99979 * 18 16 14 20 20 H 1.48499 * 109.47140 * 210.00432 * 18 16 14 21 21 H 1.48501 * 109.47149 * 329.99615 * 18 16 14 22 22 O 1.42901 * 109.47548 * 64.99469 * 3 2 1 23 23 C 1.35893 * 117.00173 * 266.08968 * 22 3 2 24 24 C 1.38768 * 120.04357 * 357.28147 * 23 22 3 25 25 C 1.38129 * 119.99848 * 180.02562 * 24 23 22 26 26 C 1.38251 * 120.07692 * 0.02562 * 25 24 23 27 27 C 1.38477 * 120.08478 * 359.97438 * 26 25 24 28 28 F 1.35102 * 119.99620 * 179.72300 * 27 26 25 29 29 C 1.38382 * 120.00864 * 359.97438 * 27 26 25 30 30 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47249 * 300.00468 * 1 2 3 32 32 H 1.09008 * 109.46639 * 60.00261 * 1 2 3 33 33 H 1.08997 * 109.47249 * 239.99532 * 2 1 3 34 34 H 1.09003 * 109.46944 * 119.99383 * 2 1 3 35 35 H 1.08997 * 109.47234 * 300.00135 * 5 3 2 36 36 H 1.09006 * 109.47372 * 59.99940 * 5 3 2 37 37 H 0.97003 * 119.99913 * 0.02562 * 6 5 3 38 38 H 1.00897 * 110.99703 * 300.00171 * 11 9 7 39 39 H 1.00907 * 110.99798 * 63.95606 * 11 9 7 40 40 H 1.09003 * 109.46935 * 304.99713 * 12 9 7 41 41 H 1.08991 * 109.47258 * 65.00555 * 12 9 7 42 42 H 1.09003 * 109.47271 * 299.99929 * 13 12 9 43 43 H 1.09004 * 109.47390 * 59.99897 * 13 12 9 44 44 H 0.96993 * 120.00277 * 179.97438 * 17 16 14 45 45 H 1.08008 * 120.00270 * 0.02562 * 24 23 22 46 46 H 1.07997 * 119.96666 * 179.97438 * 25 24 23 47 47 H 1.07995 * 119.95775 * 180.02562 * 26 25 24 48 48 H 1.07994 * 120.04233 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0532 2.8255 -0.1263 7 6 5.3740 3.0733 -0.2275 8 8 6.1585 2.1528 -0.3186 9 6 5.8764 4.4941 -0.2276 10 1 5.2041 5.1172 -0.8174 11 7 7.2233 4.5372 -0.8124 12 6 5.9274 5.0170 1.2094 13 6 6.3174 6.4965 1.2002 14 6 6.3670 7.0118 2.6155 15 1 6.1423 6.3503 3.4391 16 6 6.6991 8.3276 2.8588 17 7 6.7419 8.7774 4.0938 18 14 7.0883 9.4715 1.4342 19 1 5.8402 10.1311 0.9736 20 1 8.0587 10.5038 1.8792 21 1 7.6759 8.6889 0.3173 22 8 1.6619 2.0815 1.2210 23 6 0.5034 2.7919 1.2126 24 6 -0.2250 2.9191 0.0383 25 6 -1.4021 3.6418 0.0307 26 6 -1.8558 4.2394 1.1919 27 6 -1.1315 4.1146 2.3656 28 9 -1.5736 4.7040 3.4980 29 6 0.0477 3.3905 2.3774 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9994 0.9053 0.7161 36 1 3.8533 0.9569 -1.0570 37 1 3.4258 3.5618 -0.0531 38 1 7.8657 3.9669 -0.2831 39 1 7.2057 4.2577 -1.7818 40 1 4.9473 4.9026 1.6726 41 1 6.6657 4.4502 1.7763 42 1 7.2974 6.6110 0.7369 43 1 5.5790 7.0634 0.6331 44 1 6.9759 9.7030 4.2651 45 1 0.1284 2.4531 -0.8697 46 1 -1.9684 3.7408 -0.8835 47 1 -2.7766 4.8037 1.1839 48 1 0.6132 3.2932 3.2923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424126382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:02 Heat of formation + Delta-G solvation = -106.671705 kcal Electronic energy + Delta-G solvation = -29396.540694 eV Core-core repulsion = 25172.803977 eV Total energy + Delta-G solvation = -4223.736717 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.12817 -40.97387 -39.76701 -37.96774 -35.54381 -35.04459 -33.82338 -32.73993 -31.05465 -30.51416 -30.42004 -29.07142 -26.69842 -24.49495 -23.64838 -23.13241 -22.76016 -21.13057 -20.41888 -19.84489 -19.14344 -17.46905 -16.87820 -16.71254 -16.66461 -16.51308 -16.13062 -16.08358 -15.66631 -15.44482 -14.98559 -14.66322 -14.41424 -14.13954 -14.09763 -13.91086 -13.50920 -13.37803 -13.16469 -13.03483 -12.61936 -12.53561 -12.41228 -12.33352 -12.23416 -11.74681 -11.63955 -11.58387 -11.15785 -11.02096 -10.87669 -10.84511 -10.41219 -9.90804 -9.76864 -9.56373 -9.20856 -9.19200 -9.08297 -8.59683 -8.49123 -8.39582 -5.96703 -3.94224 0.80099 0.95820 2.58273 2.68620 3.09297 3.24975 3.37695 3.45341 3.53273 4.04115 4.12301 4.25132 4.37272 4.43386 4.53702 4.65879 4.67272 4.75938 4.78460 4.92603 4.95244 5.04659 5.06494 5.18867 5.28370 5.36721 5.40629 5.47082 5.49286 5.60053 5.60791 5.68682 5.75132 5.80207 5.90811 5.96182 6.26476 6.33587 6.38356 6.49340 6.89621 6.98264 7.22685 7.37763 7.46174 7.61097 7.66286 7.88987 8.19923 8.60961 9.08290 9.66193 11.16854 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.003274 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.375068 B = 8549.689186 C =10987.453523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.142 4.142 3 C 0.069 3.931 4 H 0.087 0.913 5 C 0.121 3.879 6 N -0.728 5.728 7 C 0.486 3.514 8 O -0.552 6.552 9 C 0.075 3.925 10 H 0.097 0.903 11 N -0.810 5.810 12 C -0.087 4.087 13 C -0.004 4.004 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.066 3.934 17 N -0.906 5.906 18 Si 0.879 3.121 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.260 1.260 22 O -0.296 6.296 23 C 0.164 3.836 24 C -0.224 4.224 25 C -0.051 4.051 26 C -0.194 4.194 27 C 0.142 3.858 28 F -0.133 7.133 29 C -0.189 4.189 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.404 0.596 38 H 0.350 0.650 39 H 0.335 0.665 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.008 0.992 44 H 0.262 0.738 45 H 0.138 0.862 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.635 -17.178 -12.957 28.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.180 4.180 3 C 0.012 3.988 4 H 0.105 0.895 5 C -0.004 4.004 6 N -0.381 5.381 7 C 0.271 3.729 8 O -0.430 6.430 9 C -0.040 4.040 10 H 0.115 0.885 11 N -0.338 5.338 12 C -0.125 4.125 13 C -0.041 4.041 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.546 5.546 18 Si 0.706 3.294 19 H -0.205 1.205 20 H -0.216 1.216 21 H -0.184 1.184 22 O -0.209 6.209 23 C 0.118 3.882 24 C -0.243 4.243 25 C -0.069 4.069 26 C -0.213 4.213 27 C 0.123 3.877 28 F -0.111 7.111 29 C -0.208 4.208 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.239 0.761 38 H 0.164 0.836 39 H 0.146 0.854 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.026 0.974 44 H 0.071 0.929 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.154 0.846 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.892 -16.914 -12.552 27.636 hybrid contribution -0.484 0.040 -0.611 0.781 sum -18.376 -16.875 -13.163 28.208 Atomic orbital electron populations 1.21945 0.94817 1.02408 1.02335 1.21980 0.97076 0.94907 1.04032 1.22936 0.94986 0.94246 0.86611 0.89496 1.21473 0.90538 0.85072 1.03283 1.46048 1.08372 1.08106 1.75554 1.22646 0.81701 0.94123 0.74403 1.90656 1.55342 1.46917 1.50065 1.21861 0.91816 0.89526 1.00833 0.88480 1.59031 1.06540 1.61797 1.06472 1.21469 1.01445 0.99872 0.89762 1.19485 0.97186 0.90036 0.97421 1.21180 1.46725 0.96164 0.91796 0.91305 1.25014 0.94891 0.98157 0.95453 1.69921 1.49504 1.15954 1.19181 0.86777 0.78415 0.80623 0.83553 1.20527 1.21619 1.18413 1.86227 1.36336 1.62590 1.35752 1.18568 0.85788 0.90721 0.93110 1.21384 0.98406 1.06527 0.97984 1.20743 0.94712 0.93882 0.97553 1.21061 1.02556 1.05694 0.91977 1.17309 0.93336 0.94477 0.82582 1.91540 1.88837 1.81548 1.49171 1.20333 0.97745 1.03574 0.99166 0.92094 0.92067 0.92353 0.89861 0.90164 0.90321 0.89639 0.76150 0.83572 0.85372 0.92154 0.92193 0.94794 0.97408 0.92859 0.84467 0.84771 0.84634 0.83659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.45 37.16 0.31 -0.59 16 2 C -0.14 -0.85 5.64 -26.73 -0.15 -1.00 16 3 C 0.07 0.51 2.25 -26.73 -0.06 0.45 16 4 H 0.09 0.52 5.37 -51.93 -0.28 0.25 16 5 C 0.12 1.16 5.37 -4.04 -0.02 1.14 16 6 N -0.73 -8.46 5.45 -60.29 -0.33 -8.79 16 7 C 0.49 7.17 7.07 -10.99 -0.08 7.10 16 8 O -0.55 -9.61 16.25 5.55 0.09 -9.52 16 9 C 0.08 1.18 3.15 -68.86 -0.22 0.97 16 10 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 11 N -0.81 -12.63 8.44 -5.65 -0.05 -12.68 16 12 C -0.09 -1.71 4.78 -26.73 -0.13 -1.83 16 13 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 14 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.91 -28.50 13.96 55.43 0.77 -27.72 16 18 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 22 O -0.30 -2.97 9.41 -19.40 -0.18 -3.15 16 23 C 0.16 1.59 5.31 -39.23 -0.21 1.39 16 24 C -0.22 -1.70 7.15 -39.43 -0.28 -1.98 16 25 C -0.05 -0.36 10.04 -39.62 -0.40 -0.76 16 26 C -0.19 -1.65 10.02 -39.49 -0.40 -2.05 16 27 C 0.14 1.53 7.30 -39.44 -0.29 1.24 16 28 F -0.13 -1.59 17.27 2.25 0.04 -1.55 16 29 C -0.19 -2.07 9.97 -39.37 -0.39 -2.46 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.45 6.26 -51.93 -0.33 0.12 16 32 H 0.06 0.28 6.81 -51.92 -0.35 -0.08 16 33 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.40 4.26 8.35 -40.82 -0.34 3.92 16 38 H 0.35 5.61 8.58 -39.29 -0.34 5.27 16 39 H 0.33 4.42 9.06 -39.29 -0.36 4.07 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.03 0.84 6.81 -51.93 -0.35 0.48 16 43 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 45 H 0.14 0.77 4.56 -52.48 -0.24 0.53 16 46 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 47 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 393.53 15.07 5.93 5.93 Total: -1.00 -34.46 393.53 -8.45 -42.92 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -7.21 Total: 9.23 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -2.84 Total: -12.13 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.40 Total: -49.19 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.09 Total: -12.68 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.46 -8.45 -42.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424126382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.756 kcal (2) G-P(sol) polarization free energy of solvation -34.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds