Wall clock time and date at job start Tue Mar 31 2020 20:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47144 * 2 1 4 4 H 1.09000 * 109.47011 * 304.99393 * 3 2 1 5 5 C 1.53001 * 109.47043 * 184.99729 * 3 2 1 6 6 N 1.46497 * 109.47249 * 179.97438 * 5 3 2 7 7 C 1.34770 * 120.00410 * 179.97438 * 6 5 3 8 8 O 1.21284 * 120.00124 * 0.02562 * 7 6 5 9 9 C 1.50704 * 120.00479 * 180.02562 * 7 6 5 10 10 H 1.09002 * 109.47048 * 320.00347 * 9 7 6 11 11 N 1.46901 * 109.47348 * 199.99998 * 9 7 6 12 12 C 1.53003 * 109.46850 * 80.00087 * 9 7 6 13 13 C 1.53001 * 109.46878 * 185.00452 * 12 9 7 14 14 C 1.50703 * 109.47153 * 179.97438 * 13 12 9 15 15 H 1.07994 * 119.99775 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99981 * 179.97438 * 14 13 12 17 17 N 1.31509 * 120.00062 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00056 * 359.97438 * 16 14 13 19 19 H 1.48495 * 109.47478 * 89.99979 * 18 16 14 20 20 H 1.48499 * 109.47140 * 210.00432 * 18 16 14 21 21 H 1.48501 * 109.47149 * 329.99615 * 18 16 14 22 22 O 1.42901 * 109.47548 * 64.99469 * 3 2 1 23 23 C 1.35893 * 117.00173 * 266.08968 * 22 3 2 24 24 C 1.38768 * 120.04357 * 357.28147 * 23 22 3 25 25 C 1.38129 * 119.99848 * 180.02562 * 24 23 22 26 26 C 1.38251 * 120.07692 * 0.02562 * 25 24 23 27 27 C 1.38477 * 120.08478 * 359.97438 * 26 25 24 28 28 F 1.35102 * 119.99620 * 179.72300 * 27 26 25 29 29 C 1.38382 * 120.00864 * 359.97438 * 27 26 25 30 30 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47249 * 300.00468 * 1 2 3 32 32 H 1.09008 * 109.46639 * 60.00261 * 1 2 3 33 33 H 1.08997 * 109.47249 * 239.99532 * 2 1 3 34 34 H 1.09003 * 109.46944 * 119.99383 * 2 1 3 35 35 H 1.08997 * 109.47234 * 300.00135 * 5 3 2 36 36 H 1.09006 * 109.47372 * 59.99940 * 5 3 2 37 37 H 0.97003 * 119.99913 * 0.02562 * 6 5 3 38 38 H 1.00897 * 110.99703 * 300.00171 * 11 9 7 39 39 H 1.00907 * 110.99798 * 63.95606 * 11 9 7 40 40 H 1.09003 * 109.46935 * 304.99713 * 12 9 7 41 41 H 1.08991 * 109.47258 * 65.00555 * 12 9 7 42 42 H 1.09003 * 109.47271 * 299.99929 * 13 12 9 43 43 H 1.09004 * 109.47390 * 59.99897 * 13 12 9 44 44 H 0.96993 * 120.00277 * 179.97438 * 17 16 14 45 45 H 1.08008 * 120.00270 * 0.02562 * 24 23 22 46 46 H 1.07997 * 119.96666 * 179.97438 * 25 24 23 47 47 H 1.07995 * 119.95775 * 180.02562 * 26 25 24 48 48 H 1.07994 * 120.04233 * 179.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1257 6 7 4.0532 2.8255 -0.1263 7 6 5.3740 3.0733 -0.2275 8 8 6.1585 2.1528 -0.3186 9 6 5.8764 4.4941 -0.2276 10 1 5.2041 5.1172 -0.8174 11 7 7.2233 4.5372 -0.8124 12 6 5.9274 5.0170 1.2094 13 6 6.3174 6.4965 1.2002 14 6 6.3670 7.0118 2.6155 15 1 6.1423 6.3503 3.4391 16 6 6.6991 8.3276 2.8588 17 7 6.7419 8.7774 4.0938 18 14 7.0883 9.4715 1.4342 19 1 5.8402 10.1311 0.9736 20 1 8.0587 10.5038 1.8792 21 1 7.6759 8.6889 0.3173 22 8 1.6619 2.0815 1.2210 23 6 0.5034 2.7919 1.2126 24 6 -0.2250 2.9191 0.0383 25 6 -1.4021 3.6418 0.0307 26 6 -1.8558 4.2394 1.1919 27 6 -1.1315 4.1146 2.3656 28 9 -1.5736 4.7040 3.4980 29 6 0.0477 3.3905 2.3774 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.9994 0.9053 0.7161 36 1 3.8533 0.9569 -1.0570 37 1 3.4258 3.5618 -0.0531 38 1 7.8657 3.9669 -0.2831 39 1 7.2057 4.2577 -1.7818 40 1 4.9473 4.9026 1.6726 41 1 6.6657 4.4502 1.7763 42 1 7.2974 6.6110 0.7369 43 1 5.5790 7.0634 0.6331 44 1 6.9759 9.7030 4.2651 45 1 0.1284 2.4531 -0.8697 46 1 -1.9684 3.7408 -0.8835 47 1 -2.7766 4.8037 1.1839 48 1 0.6132 3.2932 3.2923 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424126382.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:02 Heat of formation + Delta-G solvation = -131.455648 kcal Electronic energy + Delta-G solvation = -29397.615406 eV Core-core repulsion = 25172.803977 eV Total energy + Delta-G solvation = -4224.811430 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.97895 -41.69497 -40.88480 -38.66415 -36.92317 -36.05326 -34.79386 -34.49615 -32.29571 -31.71910 -31.14762 -29.88282 -28.23492 -25.71637 -24.37764 -23.91688 -23.74143 -22.13998 -21.80659 -21.04352 -19.82050 -19.02367 -18.30709 -17.74552 -17.45825 -17.36473 -16.99737 -16.92131 -16.76872 -16.32864 -16.23249 -15.98226 -15.54418 -15.30966 -14.96775 -14.74626 -14.70417 -14.55464 -14.21252 -13.97510 -13.89778 -13.73838 -13.47597 -13.19996 -12.94667 -12.82828 -12.80387 -12.56047 -12.35596 -12.13637 -12.01959 -11.76146 -11.73405 -11.61237 -11.42968 -11.31136 -11.12761 -10.71701 -10.20221 -9.92096 -9.67198 -9.26011 -8.25477 -6.29236 0.10613 0.28843 1.39486 1.43067 1.47781 1.57316 1.93298 2.13186 2.41421 2.58172 3.10929 3.33872 3.50063 3.54854 3.66207 3.78092 3.79660 3.90923 4.03761 4.05214 4.09112 4.19992 4.25730 4.33841 4.42389 4.48766 4.56949 4.66401 4.69450 4.80366 4.83428 4.99981 5.05786 5.09334 5.12329 5.14925 5.22556 5.31643 5.33815 5.37476 5.48370 5.64754 5.71522 5.72805 6.06038 6.31679 6.33256 6.38717 6.53447 6.79494 7.09475 7.35276 8.91686 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.003274 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.375068 B = 8549.689186 C =10987.453523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.139 4.139 3 C 0.072 3.928 4 H 0.111 0.889 5 C 0.119 3.881 6 N -0.716 5.716 7 C 0.488 3.512 8 O -0.580 6.580 9 C 0.084 3.916 10 H 0.121 0.879 11 N -0.818 5.818 12 C -0.079 4.079 13 C 0.004 3.996 14 C -0.533 4.533 15 H 0.024 0.976 16 C 0.001 3.999 17 N -0.956 5.956 18 Si 0.954 3.046 19 H -0.264 1.264 20 H -0.289 1.289 21 H -0.242 1.242 22 O -0.318 6.318 23 C 0.156 3.844 24 C -0.214 4.214 25 C -0.041 4.041 26 C -0.194 4.194 27 C 0.116 3.884 28 F -0.149 7.149 29 C -0.217 4.217 30 H 0.067 0.933 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.411 0.589 38 H 0.346 0.654 39 H 0.350 0.650 40 H 0.059 0.941 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.022 0.978 44 H 0.265 0.735 45 H 0.165 0.835 46 H 0.172 0.828 47 H 0.153 0.847 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.013 -17.358 -17.378 31.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.177 4.177 3 C 0.016 3.984 4 H 0.129 0.871 5 C -0.005 4.005 6 N -0.367 5.367 7 C 0.274 3.726 8 O -0.460 6.460 9 C -0.031 4.031 10 H 0.139 0.861 11 N -0.347 5.347 12 C -0.117 4.117 13 C -0.034 4.034 14 C -0.571 4.571 15 H 0.043 0.957 16 C -0.195 4.195 17 N -0.597 5.597 18 Si 0.777 3.223 19 H -0.189 1.189 20 H -0.215 1.215 21 H -0.165 1.165 22 O -0.232 6.232 23 C 0.111 3.889 24 C -0.233 4.233 25 C -0.059 4.059 26 C -0.213 4.213 27 C 0.097 3.903 28 F -0.128 7.128 29 C -0.236 4.236 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.121 0.879 37 H 0.247 0.753 38 H 0.159 0.841 39 H 0.164 0.836 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.050 0.950 43 H 0.040 0.960 44 H 0.074 0.926 45 H 0.182 0.818 46 H 0.190 0.810 47 H 0.171 0.829 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.312 -17.116 -16.987 30.895 hybrid contribution -0.086 0.010 0.856 0.861 sum -19.398 -17.106 -16.131 30.481 Atomic orbital electron populations 1.21933 0.94336 1.02873 1.02180 1.21983 0.97391 0.93814 1.04478 1.23058 0.93456 0.95372 0.86503 0.87120 1.21630 0.91974 0.83566 1.03316 1.45976 1.07476 1.09460 1.73835 1.22347 0.82505 0.93279 0.74505 1.90650 1.56271 1.47437 1.51674 1.21654 0.92698 0.90535 0.98244 0.86091 1.59007 1.06279 1.61941 1.07481 1.21242 1.00595 0.97249 0.92664 1.19363 0.97449 0.92564 0.93993 1.21570 1.46232 0.95908 0.93414 0.95741 1.26059 0.94690 1.00213 0.98577 1.70088 1.51034 1.16664 1.21939 0.85592 0.78770 0.78056 0.79844 1.18910 1.21464 1.16514 1.86203 1.36729 1.62942 1.37341 1.18633 0.86062 0.90784 0.93453 1.21683 0.98008 1.05759 0.97818 1.21196 0.94381 0.92165 0.98178 1.21362 1.02823 1.05609 0.91511 1.17624 0.94043 0.95523 0.83089 1.91489 1.89042 1.81996 1.50233 1.20366 0.98468 1.05317 0.99476 0.91443 0.93986 0.90599 0.87651 0.91537 0.92335 0.87911 0.75308 0.84086 0.83620 0.92234 0.94308 0.95016 0.95952 0.92646 0.81778 0.81020 0.82936 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 8.45 71.98 0.61 -0.78 16 2 C -0.14 -1.35 5.64 30.59 0.17 -1.18 16 3 C 0.07 0.91 2.25 30.60 0.07 0.98 16 4 H 0.11 0.87 5.37 -2.39 -0.01 0.86 16 5 C 0.12 2.07 5.37 86.38 0.46 2.53 16 6 N -0.72 -15.34 5.45 -463.06 -2.52 -17.86 16 7 C 0.49 13.70 7.07 87.66 0.62 14.32 16 8 O -0.58 -19.61 16.25 -3.04 -0.05 -19.66 16 9 C 0.08 2.49 3.15 44.17 0.14 2.63 16 10 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 11 N -0.82 -23.97 8.44 -171.79 -1.45 -25.42 16 12 C -0.08 -3.08 4.78 30.60 0.15 -2.94 16 13 C 0.00 0.18 3.93 29.85 0.12 0.29 16 14 C -0.53 -31.60 9.66 25.60 0.25 -31.35 16 15 H 0.02 1.61 7.99 -2.91 -0.02 1.58 16 16 C 0.00 0.04 5.47 84.66 0.46 0.50 16 17 N -0.96 -61.80 13.96 21.45 0.30 -61.50 16 18 Si 0.95 45.26 27.47 68.60 1.88 47.14 16 19 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 21 H -0.24 -10.70 6.54 99.48 0.65 -10.05 16 22 O -0.32 -6.22 9.41 -92.34 -0.87 -7.09 16 23 C 0.16 2.93 5.31 22.50 0.12 3.05 16 24 C -0.21 -2.59 7.15 22.37 0.16 -2.42 16 25 C -0.04 -0.44 10.04 22.25 0.22 -0.22 16 26 C -0.19 -3.00 10.02 22.33 0.22 -2.78 16 27 C 0.12 2.57 7.30 22.36 0.16 2.74 16 28 F -0.15 -3.82 17.27 44.97 0.78 -3.04 16 29 C -0.22 -5.04 9.97 22.41 0.22 -4.82 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.04 0.55 6.26 -2.39 -0.01 0.53 16 32 H 0.08 0.40 6.81 -2.38 -0.02 0.39 16 33 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 37 H 0.41 7.75 8.35 -92.71 -0.77 6.98 16 38 H 0.35 10.77 8.58 -89.70 -0.77 10.00 16 39 H 0.35 8.38 9.06 -89.69 -0.81 7.57 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.03 1.51 6.81 -2.39 -0.02 1.49 16 43 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 44 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 45 H 0.17 1.03 4.56 -2.91 -0.01 1.01 16 46 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 47 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 48 H 0.13 3.23 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -78.12 393.53 0.82 -77.30 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -1.40 Total: 29.56 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.16 Total: -19.43 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -3.67 Total: -104.78 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.92 Total: -26.75 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 1.88 Total: 47.14 kcal Total: -78.12 0.82 -77.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424126382.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.157 kcal (2) G-P(sol) polarization free energy of solvation -78.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds