Wall clock time and date at job start Tue Mar 31 2020 22:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46805 * 2 1 4 4 C 1.50694 * 109.47364 * 239.99815 * 2 1 3 5 5 C 1.38238 * 119.99629 * 299.72509 * 4 2 1 6 6 C 1.38240 * 119.99991 * 179.78800 * 5 4 2 7 7 C 1.38237 * 119.99612 * 0.44216 * 6 5 4 8 8 C 1.38237 * 120.00187 * 359.81476 * 7 6 5 9 9 C 1.38227 * 120.00034 * 359.97438 * 8 7 6 10 10 C 1.53004 * 109.47014 * 119.99305 * 2 1 3 11 11 H 1.09002 * 109.46767 * 60.00672 * 10 2 1 12 12 N 1.46894 * 109.47440 * 300.00236 * 10 2 1 13 13 C 1.46900 * 111.00154 * 154.99591 * 12 10 2 14 14 C 1.50700 * 109.47307 * 179.97438 * 13 12 10 15 15 C 1.38632 * 119.75333 * 269.73613 * 14 13 12 16 16 C 1.37613 * 120.25187 * 179.72113 * 15 14 13 17 17 C 1.40715 * 119.74190 * 0.56618 * 16 15 14 18 18 C 1.41404 * 120.24553 * 179.68287 * 17 16 15 19 19 H 1.08002 * 119.99706 * 155.31164 * 18 17 16 20 20 C 1.39942 * 119.99898 * 335.30924 * 18 17 16 21 21 N 1.30828 * 120.00209 * 342.23596 * 20 18 17 22 22 Si 1.86802 * 120.00033 * 162.23080 * 20 18 17 23 23 H 1.48493 * 109.46959 * 94.66517 * 22 20 18 24 24 H 1.48500 * 109.46940 * 214.66915 * 22 20 18 25 25 H 1.48496 * 109.46866 * 334.66696 * 22 20 18 26 26 C 1.40722 * 119.51314 * 359.70394 * 17 16 15 27 27 C 1.37611 * 119.74048 * 0.02562 * 26 17 16 28 28 C 1.50696 * 109.46948 * 180.02562 * 10 2 1 29 29 N 1.34777 * 120.00386 * 299.99930 * 28 10 2 30 30 O 1.21279 * 120.00144 * 120.00868 * 28 10 2 31 31 H 1.09007 * 109.47027 * 60.00582 * 1 2 3 32 32 H 1.08996 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47683 * 300.00263 * 1 2 3 34 34 H 1.07995 * 120.00492 * 359.97438 * 5 4 2 35 35 H 1.07994 * 120.00076 * 180.27150 * 6 5 4 36 36 H 1.08001 * 119.99893 * 179.83101 * 7 6 5 37 37 H 1.08000 * 119.99694 * 180.02562 * 8 7 6 38 38 H 1.07999 * 120.00168 * 180.02562 * 9 8 7 39 39 H 1.00906 * 111.00068 * 31.04245 * 12 10 2 40 40 H 1.08998 * 109.47180 * 300.00338 * 13 12 10 41 41 H 1.09001 * 109.46531 * 60.00520 * 13 12 10 42 42 H 1.08005 * 119.87642 * 359.96990 * 15 14 13 43 43 H 1.07998 * 120.13221 * 180.27048 * 16 15 14 44 44 H 0.96990 * 120.00196 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.12526 * 179.97438 * 26 17 16 46 46 H 1.08004 * 119.87587 * 180.02562 * 27 26 17 47 47 H 0.97006 * 119.99849 * 0.02562 * 29 28 10 48 48 H 0.96996 * 120.00408 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7031 -2.0355 -1.4462 6 6 2.1602 -2.6861 -2.5770 7 6 2.9542 -2.0140 -3.4874 8 6 3.2879 -0.6904 -3.2689 9 6 2.8271 -0.0387 -2.1404 10 6 2.0399 -0.7211 1.2494 11 1 1.6767 -1.7488 1.2494 12 7 1.5503 -0.0286 2.4487 13 6 1.4874 -0.9436 3.5962 14 6 0.9825 -0.1991 4.8053 15 6 1.8830 0.4263 5.6537 16 6 1.4329 1.1138 6.7576 17 6 0.0535 1.1703 7.0301 18 6 -0.4202 1.8681 8.1651 19 1 -1.4281 2.2560 8.1787 20 6 0.4168 2.0559 9.2707 21 7 1.4855 1.3153 9.4155 22 14 0.0084 3.3643 10.5399 23 1 -0.7515 2.7494 11.6577 24 1 1.2659 3.9564 11.0627 25 1 -0.8139 4.4272 9.9080 26 6 -0.8510 0.5269 6.1651 27 6 -0.3786 -0.1500 5.0641 28 6 3.5469 -0.7206 1.2497 29 7 4.2213 -1.3039 0.2390 30 8 4.1529 -0.1954 2.1595 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.0862 -2.5618 -0.7328 35 1 1.8994 -3.7200 -2.7478 36 1 3.3137 -2.5230 -4.3696 37 1 3.9079 -0.1653 -3.9805 38 1 3.0874 0.9955 -1.9699 39 1 0.6526 0.3995 2.2780 40 1 0.8110 -1.7672 3.3676 41 1 2.4828 -1.3372 3.8019 42 1 2.9416 0.3773 5.4453 43 1 2.1358 1.6040 7.4148 44 1 2.0659 1.4458 10.1816 45 1 -1.9117 0.5636 6.3652 46 1 -1.0709 -0.6442 4.3986 47 1 3.7366 -1.7238 -0.4889 48 1 5.1912 -1.3038 0.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428838633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:45 Heat of formation + Delta-G solvation = 3.100292 kcal Electronic energy + Delta-G solvation = -28455.391542 eV Core-core repulsion = 24667.184120 eV Total energy + Delta-G solvation = -3788.207422 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.70173 -38.88182 -37.63485 -36.34542 -34.37588 -33.43865 -32.81883 -31.29851 -30.41683 -29.33664 -29.12200 -27.39084 -25.57754 -23.62589 -23.08413 -22.72653 -21.05360 -20.85952 -19.94113 -19.67875 -17.34639 -17.27905 -17.21693 -16.93921 -15.85291 -15.46718 -15.20141 -14.97179 -14.58815 -14.34040 -14.13708 -13.86763 -13.74531 -13.63736 -13.45042 -13.19355 -13.07523 -12.83496 -12.46306 -12.26469 -11.96776 -11.85363 -11.73270 -11.51024 -11.43006 -11.18127 -11.01564 -10.90353 -10.83146 -10.39811 -10.30215 -9.74823 -9.56697 -9.48783 -9.29345 -9.27352 -9.07323 -9.01149 -8.03107 -7.34223 -7.23408 -6.69223 -4.27810 0.93398 1.01094 2.79303 2.84879 3.11147 3.14909 3.17142 3.23078 3.38656 3.59283 3.98342 4.18521 4.42367 4.58793 4.64806 4.72044 4.77182 4.83577 4.90005 5.02906 5.11671 5.15430 5.29127 5.38009 5.53148 5.63397 5.67970 5.77881 5.81559 5.90549 5.91538 6.00806 6.10990 6.14765 6.28367 6.30015 6.45810 6.59503 6.60651 6.87653 7.05789 7.14180 7.24055 7.39181 7.43779 7.51852 7.69415 7.74018 7.96262 8.13940 8.26007 8.38434 8.49931 8.73454 8.97069 9.06433 10.25376 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.002166 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.711807 B =12924.738764 C =13325.488120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 H 0.094 0.906 4 C -0.077 4.077 5 C -0.124 4.124 6 C -0.118 4.118 7 C -0.125 4.125 8 C -0.117 4.117 9 C -0.108 4.108 10 C 0.077 3.923 11 H 0.065 0.935 12 N -0.660 5.660 13 C 0.128 3.872 14 C -0.210 4.210 15 C -0.073 4.073 16 C -0.168 4.168 17 C 0.113 3.887 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.076 3.924 21 N -0.792 5.792 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.229 4.229 27 C -0.086 4.086 28 C 0.517 3.483 29 N -0.865 5.865 30 O -0.512 6.512 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.123 0.877 38 H 0.124 0.876 39 H 0.346 0.654 40 H 0.017 0.983 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.116 0.884 44 H 0.280 0.720 45 H 0.089 0.911 46 H 0.082 0.918 47 H 0.397 0.603 48 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.072 -6.819 -24.449 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.071 4.071 3 H 0.112 0.888 4 C -0.078 4.078 5 C -0.143 4.143 6 C -0.136 4.136 7 C -0.143 4.143 8 C -0.135 4.135 9 C -0.126 4.126 10 C -0.037 4.037 11 H 0.082 0.918 12 N -0.295 5.295 13 C 0.000 4.000 14 C -0.212 4.212 15 C -0.092 4.092 16 C -0.187 4.187 17 C 0.110 3.890 18 C -0.493 4.493 19 H 0.094 0.906 20 C -0.142 4.142 21 N -0.418 5.418 22 Si 0.730 3.270 23 H -0.197 1.197 24 H -0.201 1.201 25 H -0.185 1.185 26 C -0.249 4.249 27 C -0.105 4.105 28 C 0.300 3.700 29 N -0.434 5.434 30 O -0.385 6.385 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.142 0.858 39 H 0.169 0.831 40 H 0.035 0.965 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.134 0.866 44 H 0.091 0.909 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.229 0.771 48 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.081 -6.220 -23.398 24.406 hybrid contribution -0.666 -0.289 -0.006 0.726 sum 2.416 -6.510 -23.405 24.413 Atomic orbital electron populations 1.21919 0.93150 1.02566 1.02940 1.20276 0.96785 1.00147 0.89933 0.88767 1.19866 0.97495 0.94214 0.96204 1.21115 1.00666 0.94349 0.98138 1.21185 0.97965 1.00145 0.94283 1.21197 0.98700 0.94869 0.99514 1.21186 0.99920 0.94922 0.97461 1.21141 0.97228 1.00250 0.93999 1.21504 0.92476 0.97888 0.91823 0.91786 1.60296 1.33775 1.33508 1.01880 1.20624 0.99255 0.91580 0.88515 1.18828 0.93103 1.10488 0.98791 1.20560 0.97131 0.97023 0.94472 1.21317 0.96260 1.03603 0.97537 1.17631 0.91671 0.88481 0.91179 1.19575 0.99663 1.31423 0.98663 0.90571 1.25910 0.94135 0.95194 0.98958 1.69835 1.12072 1.32275 1.27584 0.86345 0.78954 0.81482 0.80188 1.19674 1.20062 1.18466 1.20901 0.97792 1.06355 0.99805 1.20336 0.93764 0.99423 0.96992 1.20650 0.90297 0.77552 0.81495 1.44388 1.10651 1.61706 1.26668 1.90766 1.69838 1.42782 1.35086 0.91644 0.92204 0.91148 0.85733 0.85823 0.86036 0.85916 0.85804 0.83113 0.96497 0.91602 0.89185 0.86597 0.90938 0.89230 0.90014 0.77101 0.77656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.77 37.16 0.33 -0.98 16 2 C -0.05 -0.52 2.28 -91.78 -0.21 -0.73 16 3 H 0.09 1.03 7.88 -51.93 -0.41 0.62 16 4 C -0.08 -0.64 2.57 -104.62 -0.27 -0.91 16 5 C -0.12 -0.92 7.35 -39.58 -0.29 -1.21 16 6 C -0.12 -0.74 10.04 -39.58 -0.40 -1.14 16 7 C -0.12 -0.75 10.05 -39.58 -0.40 -1.15 16 8 C -0.12 -0.76 10.05 -39.59 -0.40 -1.16 16 9 C -0.11 -0.84 8.97 -39.59 -0.36 -1.19 16 10 C 0.08 0.99 1.96 -68.87 -0.14 0.85 16 11 H 0.06 0.75 7.03 -51.93 -0.37 0.38 16 12 N -0.66 -10.78 5.83 -109.22 -0.64 -11.41 16 13 C 0.13 2.38 5.49 -4.98 -0.03 2.35 16 14 C -0.21 -4.73 5.42 -104.33 -0.56 -5.30 16 15 C -0.07 -1.83 9.67 -39.66 -0.38 -2.21 16 16 C -0.17 -4.57 8.70 -38.87 -0.34 -4.91 16 17 C 0.11 3.10 5.57 -106.82 -0.60 2.50 16 18 C -0.46 -12.63 9.05 -37.74 -0.34 -12.97 16 19 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 20 C 0.08 1.96 5.14 -17.34 -0.09 1.87 16 21 N -0.79 -21.17 10.97 55.55 0.61 -20.57 16 22 Si 0.91 19.16 29.60 -169.99 -5.03 14.13 16 23 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 25 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 26 C -0.23 -5.72 9.80 -38.87 -0.38 -6.10 16 27 C -0.09 -1.94 9.67 -39.66 -0.38 -2.32 16 28 C 0.52 7.58 7.27 -10.99 -0.08 7.50 16 29 N -0.87 -9.16 8.07 31.22 0.25 -8.91 16 30 O -0.51 -10.16 16.76 5.56 0.09 -10.07 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.06 0.48 7.41 -51.93 -0.38 0.09 16 33 H 0.07 0.68 6.21 -51.93 -0.32 0.36 16 34 H 0.12 0.84 7.10 -52.49 -0.37 0.47 16 35 H 0.12 0.57 8.06 -52.49 -0.42 0.14 16 36 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 37 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.12 0.92 7.95 -52.49 -0.42 0.51 16 39 H 0.35 5.26 6.16 -39.29 -0.24 5.02 16 40 H 0.02 0.28 7.99 -51.93 -0.42 -0.13 16 41 H 0.07 1.32 7.56 -51.93 -0.39 0.93 16 42 H 0.09 2.22 8.06 -52.48 -0.42 1.79 16 43 H 0.12 3.28 6.18 -52.49 -0.32 2.96 16 44 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 45 H 0.09 2.10 8.06 -52.49 -0.42 1.68 16 46 H 0.08 1.58 8.06 -52.48 -0.42 1.16 16 47 H 0.40 3.47 4.75 -40.82 -0.19 3.28 16 48 H 0.39 3.78 8.93 -40.82 -0.36 3.42 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -31.83 388.18 -10.89 -42.71 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -6.71 Total: 15.45 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -5.31 Total: -27.19 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.22 Total: -40.89 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.83 -10.89 -42.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428838633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.813 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds