Wall clock time and date at job start Tue Mar 31 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46805 * 2 1 4 4 C 1.50694 * 109.47364 * 239.99815 * 2 1 3 5 5 C 1.38238 * 119.99629 * 299.72509 * 4 2 1 6 6 C 1.38240 * 119.99991 * 179.78800 * 5 4 2 7 7 C 1.38237 * 119.99612 * 0.44216 * 6 5 4 8 8 C 1.38237 * 120.00187 * 359.81476 * 7 6 5 9 9 C 1.38227 * 120.00034 * 359.97438 * 8 7 6 10 10 C 1.53004 * 109.47014 * 119.99305 * 2 1 3 11 11 H 1.09002 * 109.46767 * 60.00672 * 10 2 1 12 12 N 1.46894 * 109.47440 * 300.00236 * 10 2 1 13 13 C 1.46900 * 111.00154 * 154.99591 * 12 10 2 14 14 C 1.50700 * 109.47307 * 179.97438 * 13 12 10 15 15 C 1.38632 * 119.75333 * 269.73613 * 14 13 12 16 16 C 1.37613 * 120.25187 * 179.72113 * 15 14 13 17 17 C 1.40715 * 119.74190 * 0.56618 * 16 15 14 18 18 C 1.41404 * 120.24553 * 179.68287 * 17 16 15 19 19 H 1.08002 * 119.99706 * 155.31164 * 18 17 16 20 20 C 1.39942 * 119.99898 * 335.30924 * 18 17 16 21 21 N 1.30828 * 120.00209 * 342.23596 * 20 18 17 22 22 Si 1.86802 * 120.00033 * 162.23080 * 20 18 17 23 23 H 1.48493 * 109.46959 * 94.66517 * 22 20 18 24 24 H 1.48500 * 109.46940 * 214.66915 * 22 20 18 25 25 H 1.48496 * 109.46866 * 334.66696 * 22 20 18 26 26 C 1.40722 * 119.51314 * 359.70394 * 17 16 15 27 27 C 1.37611 * 119.74048 * 0.02562 * 26 17 16 28 28 C 1.50696 * 109.46948 * 180.02562 * 10 2 1 29 29 N 1.34777 * 120.00386 * 299.99930 * 28 10 2 30 30 O 1.21279 * 120.00144 * 120.00868 * 28 10 2 31 31 H 1.09007 * 109.47027 * 60.00582 * 1 2 3 32 32 H 1.08996 * 109.47065 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47683 * 300.00263 * 1 2 3 34 34 H 1.07995 * 120.00492 * 359.97438 * 5 4 2 35 35 H 1.07994 * 120.00076 * 180.27150 * 6 5 4 36 36 H 1.08001 * 119.99893 * 179.83101 * 7 6 5 37 37 H 1.08000 * 119.99694 * 180.02562 * 8 7 6 38 38 H 1.07999 * 120.00168 * 180.02562 * 9 8 7 39 39 H 1.00906 * 111.00068 * 31.04245 * 12 10 2 40 40 H 1.08998 * 109.47180 * 300.00338 * 13 12 10 41 41 H 1.09001 * 109.46531 * 60.00520 * 13 12 10 42 42 H 1.08005 * 119.87642 * 359.96990 * 15 14 13 43 43 H 1.07998 * 120.13221 * 180.27048 * 16 15 14 44 44 H 0.96990 * 120.00196 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.12526 * 179.97438 * 26 17 16 46 46 H 1.08004 * 119.87587 * 180.02562 * 27 26 17 47 47 H 0.97006 * 119.99849 * 0.02562 * 29 28 10 48 48 H 0.96996 * 120.00408 * 180.02562 * 29 28 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 6 1.7031 -2.0355 -1.4462 6 6 2.1602 -2.6861 -2.5770 7 6 2.9542 -2.0140 -3.4874 8 6 3.2879 -0.6904 -3.2689 9 6 2.8271 -0.0387 -2.1404 10 6 2.0399 -0.7211 1.2494 11 1 1.6767 -1.7488 1.2494 12 7 1.5503 -0.0286 2.4487 13 6 1.4874 -0.9436 3.5962 14 6 0.9825 -0.1991 4.8053 15 6 1.8830 0.4263 5.6537 16 6 1.4329 1.1138 6.7576 17 6 0.0535 1.1703 7.0301 18 6 -0.4202 1.8681 8.1651 19 1 -1.4281 2.2560 8.1787 20 6 0.4168 2.0559 9.2707 21 7 1.4855 1.3153 9.4155 22 14 0.0084 3.3643 10.5399 23 1 -0.7515 2.7494 11.6577 24 1 1.2659 3.9564 11.0627 25 1 -0.8139 4.4272 9.9080 26 6 -0.8510 0.5269 6.1651 27 6 -0.3786 -0.1500 5.0641 28 6 3.5469 -0.7206 1.2497 29 7 4.2213 -1.3039 0.2390 30 8 4.1529 -0.1954 2.1595 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.0862 -2.5618 -0.7328 35 1 1.8994 -3.7200 -2.7478 36 1 3.3137 -2.5230 -4.3696 37 1 3.9079 -0.1653 -3.9805 38 1 3.0874 0.9955 -1.9699 39 1 0.6526 0.3995 2.2780 40 1 0.8110 -1.7672 3.3676 41 1 2.4828 -1.3372 3.8019 42 1 2.9416 0.3773 5.4453 43 1 2.1358 1.6040 7.4148 44 1 2.0659 1.4458 10.1816 45 1 -1.9117 0.5636 6.3652 46 1 -1.0709 -0.6442 4.3986 47 1 3.7366 -1.7238 -0.4889 48 1 5.1912 -1.3038 0.2394 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428838633.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:44 Heat of formation + Delta-G solvation = -16.592813 kcal Electronic energy + Delta-G solvation = -28456.245499 eV Core-core repulsion = 24667.184120 eV Total energy + Delta-G solvation = -3789.061379 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55210 -39.80199 -39.44835 -37.49989 -35.87512 -34.83833 -33.99959 -31.95252 -31.78189 -31.12460 -30.18468 -28.71016 -27.09118 -24.77261 -24.20237 -23.37133 -22.82688 -21.98487 -21.54967 -20.75683 -19.19999 -18.33506 -18.05605 -17.85689 -17.17754 -16.74735 -16.33209 -15.81056 -15.73618 -15.59740 -15.57340 -15.28285 -15.11467 -14.78732 -14.31718 -14.21241 -14.15215 -13.98747 -13.79193 -13.72915 -13.33555 -13.11008 -12.91659 -12.84435 -12.70806 -12.63405 -12.28941 -12.17440 -12.09423 -11.70373 -11.62040 -11.38405 -11.22091 -11.00256 -10.90446 -10.60985 -9.80849 -9.62851 -9.32658 -9.31972 -9.14040 -8.62322 -6.31576 0.40016 0.50548 0.95900 1.17786 1.37152 1.48647 1.54170 1.71278 2.20910 2.54401 2.72847 2.86008 3.29070 3.68206 3.75570 3.90919 3.92140 4.05763 4.16686 4.19908 4.31047 4.32747 4.35466 4.45444 4.53682 4.58176 4.63957 4.65934 4.72174 4.84743 4.88863 5.05948 5.09331 5.12335 5.17848 5.18970 5.28587 5.40626 5.48366 5.60643 5.66754 5.70904 5.73538 5.87961 5.95252 6.05338 6.10276 6.13221 6.29630 6.40186 6.46853 6.59039 6.73558 6.95874 7.06795 7.44122 8.34975 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.027345 B = 0.002166 C = 0.002101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.711807 B =12924.738764 C =13325.488120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.043 4.043 3 H 0.078 0.922 4 C -0.089 4.089 5 C -0.130 4.130 6 C -0.118 4.118 7 C -0.123 4.123 8 C -0.120 4.120 9 C -0.121 4.121 10 C 0.081 3.919 11 H 0.086 0.914 12 N -0.677 5.677 13 C 0.138 3.862 14 C -0.198 4.198 15 C -0.086 4.086 16 C -0.193 4.193 17 C 0.080 3.920 18 C -0.500 4.500 19 H 0.078 0.922 20 C 0.031 3.969 21 N -0.829 5.829 22 Si 0.983 3.017 23 H -0.260 1.260 24 H -0.269 1.269 25 H -0.257 1.257 26 C -0.240 4.240 27 C -0.079 4.079 28 C 0.514 3.486 29 N -0.842 5.842 30 O -0.574 6.574 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.354 0.646 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.286 0.714 45 H 0.101 0.899 46 H 0.125 0.875 47 H 0.409 0.591 48 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 -8.215 -27.071 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 H 0.096 0.904 4 C -0.090 4.090 5 C -0.148 4.148 6 C -0.136 4.136 7 C -0.141 4.141 8 C -0.138 4.138 9 C -0.139 4.139 10 C -0.032 4.032 11 H 0.103 0.897 12 N -0.313 5.313 13 C 0.010 3.990 14 C -0.199 4.199 15 C -0.105 4.105 16 C -0.213 4.213 17 C 0.078 3.922 18 C -0.530 4.530 19 H 0.096 0.904 20 C -0.183 4.183 21 N -0.455 5.455 22 Si 0.803 3.197 23 H -0.185 1.185 24 H -0.193 1.193 25 H -0.181 1.181 26 C -0.260 4.260 27 C -0.097 4.097 28 C 0.298 3.702 29 N -0.411 5.411 30 O -0.452 6.452 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.150 0.850 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.155 0.845 38 H 0.137 0.863 39 H 0.177 0.823 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.102 0.898 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.119 0.881 46 H 0.143 0.857 47 H 0.244 0.756 48 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 1.886 -7.652 -26.091 27.255 hybrid contribution -0.234 0.024 0.557 0.604 sum 1.652 -7.629 -25.534 26.700 Atomic orbital electron populations 1.21905 0.92031 1.03412 1.02917 1.20148 0.97623 0.99079 0.89338 0.90370 1.19722 0.98628 0.94800 0.95800 1.21247 1.00853 0.93881 0.98841 1.21458 0.97385 1.01093 0.93677 1.21508 0.97957 0.94619 1.00040 1.21401 0.99832 0.95384 0.97193 1.21211 0.97671 1.00313 0.94695 1.21565 0.91155 0.99001 0.91518 0.89683 1.60029 1.34505 1.33954 1.02790 1.20436 0.98658 0.92066 0.87873 1.19237 0.92976 1.08550 0.99186 1.20670 0.97474 0.97635 0.94744 1.21223 0.96314 1.05279 0.98444 1.17976 0.92108 0.89754 0.92411 1.19841 1.00363 1.33147 0.99657 0.90430 1.26827 0.93705 0.96936 1.00868 1.69905 1.13175 1.33749 1.28658 0.85190 0.78924 0.78236 0.77320 1.18466 1.19329 1.18112 1.21174 0.98148 1.06350 1.00279 1.20693 0.94291 0.98268 0.96488 1.21053 0.91198 0.76775 0.81163 1.44204 1.11066 1.60042 1.25750 1.90749 1.71048 1.45800 1.37568 0.90664 0.90884 0.92132 0.84951 0.83833 0.83933 0.84458 0.86322 0.82270 0.93522 0.93438 0.89838 0.88906 0.90313 0.88051 0.85720 0.75628 0.76948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.77 71.98 0.63 -1.59 16 2 C -0.04 -0.78 2.28 -11.54 -0.03 -0.81 16 3 H 0.08 1.68 7.88 -2.39 -0.02 1.66 16 4 C -0.09 -1.28 2.57 -19.87 -0.05 -1.34 16 5 C -0.13 -1.51 7.35 22.27 0.16 -1.34 16 6 C -0.12 -1.06 10.04 22.27 0.22 -0.84 16 7 C -0.12 -1.06 10.05 22.27 0.22 -0.84 16 8 C -0.12 -1.26 10.05 22.27 0.22 -1.03 16 9 C -0.12 -1.67 8.97 22.27 0.20 -1.47 16 10 C 0.08 1.96 1.96 44.17 0.09 2.04 16 11 H 0.09 1.73 7.03 -2.39 -0.02 1.72 16 12 N -0.68 -21.46 5.83 -499.47 -2.91 -24.37 16 13 C 0.14 4.95 5.49 85.56 0.47 5.42 16 14 C -0.20 -8.83 5.42 -19.67 -0.11 -8.94 16 15 C -0.09 -4.50 9.67 22.22 0.21 -4.29 16 16 C -0.19 -11.09 8.70 22.73 0.20 -10.89 16 17 C 0.08 4.54 5.57 -21.29 -0.12 4.42 16 18 C -0.50 -28.22 9.05 23.46 0.21 -28.01 16 19 H 0.08 4.17 7.91 -2.91 -0.02 4.15 16 20 C 0.03 1.64 5.14 85.26 0.44 2.08 16 21 N -0.83 -46.15 10.97 21.83 0.24 -45.91 16 22 Si 0.98 40.09 29.60 68.60 2.03 42.12 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 C -0.24 -12.00 9.80 22.73 0.22 -11.78 16 27 C -0.08 -3.42 9.67 22.22 0.21 -3.20 16 28 C 0.51 14.82 7.27 87.66 0.64 15.46 16 29 N -0.84 -16.72 8.07 -173.54 -1.40 -18.13 16 30 O -0.57 -23.36 16.76 -3.02 -0.05 -23.41 16 31 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.07 0.93 7.41 -2.39 -0.02 0.91 16 33 H 0.06 1.05 6.21 -2.39 -0.01 1.03 16 34 H 0.13 1.30 7.10 -2.91 -0.02 1.28 16 35 H 0.14 0.71 8.06 -2.91 -0.02 0.69 16 36 H 0.14 0.62 8.06 -2.91 -0.02 0.60 16 37 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 38 H 0.12 1.70 7.95 -2.91 -0.02 1.68 16 39 H 0.35 10.21 6.16 -89.69 -0.55 9.66 16 40 H 0.05 1.41 7.99 -2.39 -0.02 1.39 16 41 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 42 H 0.08 4.36 8.06 -2.91 -0.02 4.33 16 43 H 0.09 5.64 6.18 -2.91 -0.02 5.63 16 44 H 0.29 14.45 8.30 -92.72 -0.77 13.68 16 45 H 0.10 4.72 8.06 -2.91 -0.02 4.69 16 46 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 47 H 0.41 6.25 4.75 -92.70 -0.44 5.81 16 48 H 0.40 7.25 8.93 -92.71 -0.83 6.43 16 Total: -1.00 -73.04 388.18 1.15 -71.89 By element: Atomic # 1 Polarization: 45.55 SS G_CDS: -0.82 Total: 44.73 kcal Atomic # 6 Polarization: -51.00 SS G_CDS: 4.06 Total: -46.94 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -4.07 Total: -88.40 kcal Atomic # 8 Polarization: -23.36 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Total: -73.04 1.15 -71.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428838633.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.298 kcal (2) G-P(sol) polarization free energy of solvation -73.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds