Wall clock time and date at job start Tue Mar 31 2020 22:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47343 * 2 1 4 4 C 1.52998 * 109.46752 * 240.00268 * 2 1 3 5 5 C 1.50705 * 109.46998 * 172.58515 * 4 2 1 6 6 C 1.38430 * 122.53516 * 275.62782 * 5 4 2 7 7 C 1.33385 * 114.92046 * 179.76012 * 6 5 4 8 8 S 1.75893 * 109.59220 * 0.47765 * 7 6 5 9 9 C 1.33383 * 122.54474 * 95.91851 * 5 4 2 10 10 N 1.46900 * 109.47142 * 120.00246 * 2 1 3 11 11 C 1.46895 * 111.00242 * 43.86348 * 10 2 1 12 12 C 1.50695 * 109.47529 * 76.78697 * 11 10 2 13 13 H 1.08008 * 119.99843 * 5.47422 * 12 11 10 14 14 C 1.37877 * 120.00297 * 185.47469 * 12 11 10 15 15 N 1.31511 * 119.99777 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99891 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47444 * 89.99832 * 16 14 12 18 18 H 1.48502 * 109.47175 * 209.99864 * 16 14 12 19 19 H 1.48503 * 109.47405 * 329.99692 * 16 14 12 20 20 C 1.46906 * 110.99947 * 279.90773 * 10 2 1 21 21 C 1.52999 * 109.46860 * 190.00341 * 20 10 2 22 22 N 1.46906 * 109.46860 * 180.02562 * 21 20 10 23 23 C 1.47018 * 110.99589 * 293.63235 * 22 21 20 24 24 C 1.53104 * 109.25183 * 177.60705 * 23 22 21 25 25 O 1.43019 * 109.26017 * 56.85254 * 24 23 22 26 26 C 1.43019 * 113.73381 * 301.32896 * 25 24 23 27 27 C 1.47011 * 110.99964 * 169.99898 * 22 21 20 28 28 H 1.08999 * 109.47206 * 59.99617 * 1 2 3 29 29 H 1.09001 * 109.46516 * 299.99628 * 1 2 3 30 30 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46703 * 292.57823 * 4 2 1 32 32 H 1.08998 * 109.47397 * 52.57898 * 4 2 1 33 33 H 1.08004 * 122.53631 * 359.97438 * 6 5 4 34 34 H 1.07993 * 125.20720 * 180.20742 * 7 6 5 35 35 H 1.08004 * 125.19851 * 0.02562 * 9 5 4 36 36 H 1.09000 * 109.47350 * 196.79394 * 11 10 2 37 37 H 1.09004 * 109.47094 * 316.78340 * 11 10 2 38 38 H 0.97012 * 119.99783 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.46977 * 310.00129 * 20 10 2 40 40 H 1.08994 * 109.46764 * 69.99970 * 20 10 2 41 41 H 1.08999 * 109.47152 * 299.99681 * 21 20 10 42 42 H 1.09000 * 109.47607 * 59.99779 * 21 20 10 43 43 H 1.08997 * 109.50859 * 297.54221 * 23 22 21 44 44 H 1.08993 * 109.50791 * 57.67701 * 23 22 21 45 45 H 1.08999 * 109.50517 * 296.91262 * 24 23 22 46 46 H 1.08997 * 109.53932 * 176.80377 * 24 23 22 47 47 H 1.08998 * 109.50497 * 298.73113 * 26 25 24 48 48 H 1.08997 * 109.53808 * 178.63087 * 26 25 24 49 49 H 1.09000 * 109.50600 * 302.32800 * 27 22 21 50 50 H 1.09001 * 109.50890 * 62.41213 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5358 -0.5644 -1.3444 6 6 4.1331 0.5469 -1.9140 7 6 5.4669 0.5302 -1.9138 8 16 6.0379 -0.9600 -1.1742 9 6 4.3844 -1.4884 -0.8914 10 7 2.0197 -0.6925 1.1994 11 6 1.2630 -1.9285 1.4395 12 6 1.7276 -2.9960 0.4827 13 1 2.5659 -2.8070 -0.1716 14 6 1.0827 -4.2139 0.4424 15 7 1.4879 -5.1452 -0.3930 16 14 -0.3676 -4.5406 1.5735 17 1 -1.6250 -4.1325 0.8968 18 1 -0.4270 -5.9888 1.8967 19 1 -0.2040 -3.7601 2.8263 20 6 1.9727 0.1899 2.3729 21 6 2.7138 -0.4702 3.5374 22 7 2.6663 0.4120 4.7111 23 6 3.4296 1.6459 4.4739 24 6 3.3043 2.5598 5.6958 25 8 3.7559 1.8587 6.8576 26 6 3.0339 0.6521 7.1187 27 6 3.1564 -0.2811 5.9113 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.7890 -1.7800 -1.1854 32 1 1.5723 -0.2897 -2.1343 33 1 3.5625 1.3671 -2.3241 34 1 6.0994 1.3101 -2.3112 35 1 4.0996 -2.4190 -0.4230 36 1 1.4277 -2.2622 2.4640 37 1 0.2006 -1.7398 1.2854 38 1 1.0338 -6.0021 -0.4216 39 1 2.4482 1.1406 2.1319 40 1 0.9344 0.3642 2.6550 41 1 2.2382 -1.4209 3.7784 42 1 3.7521 -0.6446 3.2552 43 1 4.4785 1.3992 4.3099 44 1 3.0334 2.1559 3.5958 45 1 2.2619 2.8499 5.8279 46 1 3.9143 3.4511 5.5485 47 1 1.9837 0.8867 7.2924 48 1 3.4480 0.1630 8.0004 49 1 2.5608 -1.1778 6.0824 50 1 4.2007 -0.5594 5.7700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542127533.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:48 Heat of formation + Delta-G solvation = 18.392376 kcal Electronic energy + Delta-G solvation = -28681.932186 eV Core-core repulsion = 25029.831830 eV Total energy + Delta-G solvation = -3652.100356 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.63023 -38.65570 -36.98917 -35.63476 -32.60146 -31.86533 -31.23672 -29.43756 -28.99167 -27.54181 -26.32563 -25.09579 -24.08365 -22.86593 -22.22356 -21.01112 -20.26188 -18.85186 -18.22620 -17.16400 -16.61375 -16.49679 -16.19305 -15.44088 -15.24279 -15.11266 -14.89001 -14.65143 -14.36241 -13.77375 -13.63529 -13.47192 -13.04881 -12.88870 -12.48542 -12.32851 -12.25183 -12.08922 -12.02825 -11.87571 -11.47386 -11.45441 -11.38111 -11.18083 -10.97618 -10.89078 -10.77072 -10.64016 -10.51905 -10.09856 -10.00470 -9.94860 -9.72835 -9.71003 -8.91608 -8.55436 -8.33074 -8.14137 -7.73693 -7.27703 -6.09723 -4.05142 1.67173 2.26766 2.61989 3.23064 3.32610 3.34776 3.39878 3.67389 3.84159 4.37454 4.75316 4.86039 4.97057 4.99836 5.08141 5.19974 5.22505 5.40266 5.40429 5.47540 5.55317 5.57595 5.61952 5.74349 5.75891 5.78306 5.85304 5.89634 5.93616 6.00936 6.14249 6.19315 6.24597 6.26011 6.36098 6.44562 6.51782 6.60700 6.70669 6.87719 6.93019 6.97702 7.06876 7.08412 7.10447 7.21190 7.47920 7.67232 7.93559 8.09046 8.64282 8.99514 9.52451 11.00810 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.004727 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.491344 B = 5922.510010 C = 8125.426226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.108 3.892 3 H 0.057 0.943 4 C -0.077 4.077 5 C -0.088 4.088 6 C -0.124 4.124 7 C -0.233 4.233 8 S 0.039 5.961 9 C -0.161 4.161 10 N -0.516 5.516 11 C 0.147 3.853 12 C -0.514 4.514 13 H 0.103 0.897 14 C 0.071 3.929 15 N -0.897 5.897 16 Si 0.867 3.133 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.269 1.269 20 C 0.064 3.936 21 C 0.060 3.940 22 N -0.538 5.538 23 C 0.016 3.984 24 C 0.064 3.936 25 O -0.389 6.389 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.131 0.869 32 H 0.053 0.947 33 H 0.128 0.872 34 H 0.151 0.849 35 H 0.183 0.817 36 H 0.023 0.977 37 H 0.002 0.998 38 H 0.263 0.737 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 13.291 5.750 14.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.002 4.002 3 H 0.075 0.925 4 C -0.117 4.117 5 C -0.098 4.098 6 C -0.155 4.155 7 C -0.368 4.368 8 S 0.301 5.699 9 C -0.296 4.296 10 N -0.240 5.240 11 C 0.021 3.979 12 C -0.551 4.551 13 H 0.120 0.880 14 C -0.131 4.131 15 N -0.535 5.535 16 Si 0.694 3.306 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.193 1.193 20 C -0.065 4.065 21 C -0.068 4.068 22 N -0.264 5.264 23 C -0.112 4.112 24 C -0.013 4.013 25 O -0.307 6.307 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.097 0.903 31 H 0.149 0.851 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.200 0.800 36 H 0.041 0.959 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.113 0.887 47 H 0.076 0.924 48 H 0.113 0.887 49 H 0.104 0.896 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.908 12.549 6.099 14.790 hybrid contribution -2.405 0.214 0.100 2.417 sum 2.503 12.763 6.199 14.408 Atomic orbital electron populations 1.22489 0.98375 1.03252 1.00376 1.21349 0.91659 0.95898 0.91252 0.92479 1.20947 0.88876 1.06795 0.95041 1.18788 0.97425 0.93388 1.00226 1.20139 0.93686 0.99442 1.02275 1.25293 0.98567 1.02298 1.10654 1.84079 1.11190 1.14795 1.59832 1.25972 0.92303 1.05274 1.06018 1.62096 1.55920 1.05061 1.00896 1.20471 0.92084 0.87916 0.97459 1.21392 1.17225 0.95952 1.20580 0.87969 1.24897 0.96888 0.96174 0.95151 1.69876 1.41323 1.05600 1.36746 0.86996 0.83842 0.77544 0.82191 1.20428 1.21410 1.19349 1.21914 0.98039 0.95694 0.90880 1.22166 1.00150 0.95714 0.88737 1.62194 1.53939 1.06159 1.04099 1.22810 0.96901 0.92447 0.99082 1.22668 0.99994 0.94248 0.84356 1.87957 1.59993 1.37095 1.45705 1.22653 0.96804 0.85012 0.96719 1.22748 0.99429 0.97740 0.91107 0.93185 0.93765 0.90331 0.85116 0.92883 0.85414 0.83136 0.80046 0.95868 0.98073 0.92671 0.92285 0.95258 0.90022 0.93745 0.93951 0.89453 0.92448 0.88731 0.92403 0.88663 0.89611 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.08 8.26 37.16 0.31 -2.77 16 2 C 0.11 1.85 2.25 -67.71 -0.15 1.70 16 3 H 0.06 0.92 7.72 -51.93 -0.40 0.52 16 4 C -0.08 -1.41 4.67 -27.88 -0.13 -1.54 16 5 C -0.09 -1.56 4.84 -106.25 -0.51 -2.08 16 6 C -0.12 -1.92 9.98 -41.21 -0.41 -2.33 16 7 C -0.23 -3.41 11.23 29.04 0.33 -3.08 16 8 S 0.04 0.62 23.34 -107.50 -2.51 -1.89 16 9 C -0.16 -3.05 10.48 29.04 0.30 -2.75 16 10 N -0.52 -9.60 4.17 -228.09 -0.95 -10.55 16 11 C 0.15 3.17 3.30 -4.98 -0.02 3.16 16 12 C -0.51 -12.74 7.66 -34.44 -0.26 -13.00 16 13 H 0.10 2.62 3.08 -52.48 -0.16 2.46 16 14 C 0.07 1.87 5.47 -17.82 -0.10 1.77 16 15 N -0.90 -25.42 13.96 55.43 0.77 -24.65 16 16 Si 0.87 20.34 27.36 -169.99 -4.65 15.69 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.14 6.70 56.52 0.38 -5.76 16 20 C 0.06 1.04 4.65 -3.82 -0.02 1.02 16 21 C 0.06 0.95 4.93 -3.82 -0.02 0.93 16 22 N -0.54 -7.39 4.73 -234.31 -1.11 -8.50 16 23 C 0.02 0.19 5.44 -3.71 -0.02 0.17 16 24 C 0.06 0.69 7.01 37.21 0.26 0.95 16 25 O -0.39 -4.83 10.83 -35.23 -0.38 -5.21 16 26 C 0.07 0.71 7.01 37.21 0.26 0.97 16 27 C 0.02 0.22 5.64 -3.72 -0.02 0.20 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.04 0.69 7.37 -51.93 -0.38 0.31 16 30 H 0.08 1.49 6.00 -51.93 -0.31 1.18 16 31 H 0.13 2.88 4.40 -51.93 -0.23 2.65 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 34 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.18 3.96 5.64 -52.48 -0.30 3.66 16 36 H 0.02 0.53 5.30 -51.93 -0.28 0.25 16 37 H 0.00 0.04 4.28 -51.93 -0.22 -0.18 16 38 H 0.26 7.15 8.31 -40.81 -0.34 6.81 16 39 H 0.06 0.90 6.20 -51.93 -0.32 0.58 16 40 H 0.03 0.49 7.44 -51.93 -0.39 0.11 16 41 H 0.08 1.43 6.14 -51.93 -0.32 1.11 16 42 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.02 6.38 -51.93 -0.33 0.69 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.09 1.02 8.09 -51.93 -0.42 0.60 16 50 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 383.84 15.07 5.78 5.78 Total: -1.00 -27.25 383.84 -11.11 -38.36 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -7.86 Total: 7.61 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: -0.20 Total: -16.66 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -1.28 Total: -43.69 kcal Atomic # 8 Polarization: -4.83 SS G_CDS: -0.38 Total: -5.21 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.65 Total: 15.69 kcal Atomic # 16 Polarization: 0.62 SS G_CDS: -2.51 Total: -1.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -27.25 -11.11 -38.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542127533.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.753 kcal (2) G-P(sol) polarization free energy of solvation -27.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds