Wall clock time and date at job start Tue Mar 31 2020 22:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47343 * 2 1 4 4 C 1.52998 * 109.46752 * 240.00268 * 2 1 3 5 5 C 1.50705 * 109.46998 * 172.58515 * 4 2 1 6 6 C 1.38430 * 122.53516 * 275.62782 * 5 4 2 7 7 C 1.33385 * 114.92046 * 179.76012 * 6 5 4 8 8 S 1.75893 * 109.59220 * 0.47765 * 7 6 5 9 9 C 1.33383 * 122.54474 * 95.91851 * 5 4 2 10 10 N 1.46900 * 109.47142 * 120.00246 * 2 1 3 11 11 C 1.46895 * 111.00242 * 43.86348 * 10 2 1 12 12 C 1.50695 * 109.47529 * 76.78697 * 11 10 2 13 13 H 1.08008 * 119.99843 * 5.47422 * 12 11 10 14 14 C 1.37877 * 120.00297 * 185.47469 * 12 11 10 15 15 N 1.31511 * 119.99777 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99891 * 0.02562 * 14 12 11 17 17 H 1.48507 * 109.47444 * 89.99832 * 16 14 12 18 18 H 1.48502 * 109.47175 * 209.99864 * 16 14 12 19 19 H 1.48503 * 109.47405 * 329.99692 * 16 14 12 20 20 C 1.46906 * 110.99947 * 279.90773 * 10 2 1 21 21 C 1.52999 * 109.46860 * 190.00341 * 20 10 2 22 22 N 1.46906 * 109.46860 * 180.02562 * 21 20 10 23 23 C 1.47018 * 110.99589 * 293.63235 * 22 21 20 24 24 C 1.53104 * 109.25183 * 177.60705 * 23 22 21 25 25 O 1.43019 * 109.26017 * 56.85254 * 24 23 22 26 26 C 1.43019 * 113.73381 * 301.32896 * 25 24 23 27 27 C 1.47011 * 110.99964 * 169.99898 * 22 21 20 28 28 H 1.08999 * 109.47206 * 59.99617 * 1 2 3 29 29 H 1.09001 * 109.46516 * 299.99628 * 1 2 3 30 30 H 1.09001 * 109.47082 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46703 * 292.57823 * 4 2 1 32 32 H 1.08998 * 109.47397 * 52.57898 * 4 2 1 33 33 H 1.08004 * 122.53631 * 359.97438 * 6 5 4 34 34 H 1.07993 * 125.20720 * 180.20742 * 7 6 5 35 35 H 1.08004 * 125.19851 * 0.02562 * 9 5 4 36 36 H 1.09000 * 109.47350 * 196.79394 * 11 10 2 37 37 H 1.09004 * 109.47094 * 316.78340 * 11 10 2 38 38 H 0.97012 * 119.99783 * 180.02562 * 15 14 12 39 39 H 1.08999 * 109.46977 * 310.00129 * 20 10 2 40 40 H 1.08994 * 109.46764 * 69.99970 * 20 10 2 41 41 H 1.08999 * 109.47152 * 299.99681 * 21 20 10 42 42 H 1.09000 * 109.47607 * 59.99779 * 21 20 10 43 43 H 1.08997 * 109.50859 * 297.54221 * 23 22 21 44 44 H 1.08993 * 109.50791 * 57.67701 * 23 22 21 45 45 H 1.08999 * 109.50517 * 296.91262 * 24 23 22 46 46 H 1.08997 * 109.53932 * 176.80377 * 24 23 22 47 47 H 1.08998 * 109.50497 * 298.73113 * 26 25 24 48 48 H 1.08997 * 109.53808 * 178.63087 * 26 25 24 49 49 H 1.09000 * 109.50600 * 302.32800 * 27 22 21 50 50 H 1.09001 * 109.50890 * 62.41213 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5358 -0.5644 -1.3444 6 6 4.1331 0.5469 -1.9140 7 6 5.4669 0.5302 -1.9138 8 16 6.0379 -0.9600 -1.1742 9 6 4.3844 -1.4884 -0.8914 10 7 2.0197 -0.6925 1.1994 11 6 1.2630 -1.9285 1.4395 12 6 1.7276 -2.9960 0.4827 13 1 2.5659 -2.8070 -0.1716 14 6 1.0827 -4.2139 0.4424 15 7 1.4879 -5.1452 -0.3930 16 14 -0.3676 -4.5406 1.5735 17 1 -1.6250 -4.1325 0.8968 18 1 -0.4270 -5.9888 1.8967 19 1 -0.2040 -3.7601 2.8263 20 6 1.9727 0.1899 2.3729 21 6 2.7138 -0.4702 3.5374 22 7 2.6663 0.4120 4.7111 23 6 3.4296 1.6459 4.4739 24 6 3.3043 2.5598 5.6958 25 8 3.7559 1.8587 6.8576 26 6 3.0339 0.6521 7.1187 27 6 3.1564 -0.2811 5.9113 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.7890 -1.7800 -1.1854 32 1 1.5723 -0.2897 -2.1343 33 1 3.5625 1.3671 -2.3241 34 1 6.0994 1.3101 -2.3112 35 1 4.0996 -2.4190 -0.4230 36 1 1.4277 -2.2622 2.4640 37 1 0.2006 -1.7398 1.2854 38 1 1.0338 -6.0021 -0.4216 39 1 2.4482 1.1406 2.1319 40 1 0.9344 0.3642 2.6550 41 1 2.2382 -1.4209 3.7784 42 1 3.7521 -0.6446 3.2552 43 1 4.4785 1.3992 4.3099 44 1 3.0334 2.1559 3.5958 45 1 2.2619 2.8499 5.8279 46 1 3.9143 3.4511 5.5485 47 1 1.9837 0.8867 7.2924 48 1 3.4480 0.1630 8.0004 49 1 2.5608 -1.1778 6.0824 50 1 4.2007 -0.5594 5.7700 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542127533.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:47 Heat of formation + Delta-G solvation = 0.936325 kcal Electronic energy + Delta-G solvation = -28682.689137 eV Core-core repulsion = 25029.831830 eV Total energy + Delta-G solvation = -3652.857307 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.68229 -40.00653 -38.29991 -36.75426 -34.57867 -33.17544 -32.16803 -30.71851 -30.62260 -28.93418 -27.71847 -26.32766 -25.04972 -24.41197 -23.66861 -22.25517 -21.30857 -20.36521 -19.68619 -18.76020 -17.99546 -17.71096 -17.14009 -16.74181 -16.57366 -16.17103 -16.04593 -15.97561 -15.80483 -15.15147 -14.98228 -14.73622 -14.51135 -14.32917 -14.02243 -13.67834 -13.48499 -13.41091 -13.29579 -13.20881 -12.97904 -12.74285 -12.59593 -12.48865 -12.36742 -12.31349 -12.19656 -12.02468 -11.79911 -11.59622 -11.43723 -11.37945 -11.28256 -10.77249 -10.65738 -10.53782 -9.44919 -9.43657 -9.06686 -8.77393 -8.14313 -6.10719 0.38098 0.99081 1.31340 1.32956 1.37801 1.44501 2.08427 2.40371 2.61651 2.94802 3.17421 3.43692 3.84890 3.93841 4.02268 4.15026 4.18053 4.22115 4.28140 4.32841 4.35275 4.43922 4.54306 4.56930 4.64384 4.65456 4.71906 4.76224 4.81208 4.82683 4.86307 4.88888 4.92597 4.99820 5.01372 5.05532 5.10209 5.14859 5.24204 5.37189 5.43965 5.59342 5.73310 5.85326 5.88664 5.95683 6.05156 6.16510 6.23301 6.58668 6.80969 7.00828 7.49358 8.98790 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.007660 B = 0.004727 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3654.491344 B = 5922.510010 C = 8125.426226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.109 3.891 3 H 0.080 0.920 4 C -0.075 4.075 5 C -0.083 4.083 6 C -0.135 4.135 7 C -0.211 4.211 8 S 0.048 5.952 9 C -0.202 4.202 10 N -0.526 5.526 11 C 0.158 3.842 12 C -0.499 4.499 13 H 0.089 0.911 14 C 0.016 3.984 15 N -0.945 5.945 16 Si 0.919 3.081 17 H -0.273 1.273 18 H -0.293 1.293 19 H -0.258 1.258 20 C 0.071 3.929 21 C 0.071 3.929 22 N -0.540 5.540 23 C 0.016 3.984 24 C 0.066 3.934 25 O -0.404 6.404 26 C 0.069 3.931 27 C 0.015 3.985 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.158 0.842 34 H 0.188 0.812 35 H 0.141 0.859 36 H 0.015 0.985 37 H 0.003 0.997 38 H 0.260 0.740 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.026 0.974 43 H 0.031 0.969 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.117 0.883 47 H 0.064 0.936 48 H 0.115 0.885 49 H 0.086 0.914 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.250 16.990 6.299 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.000 4.000 3 H 0.098 0.902 4 C -0.114 4.114 5 C -0.094 4.094 6 C -0.166 4.166 7 C -0.346 4.346 8 S 0.311 5.689 9 C -0.337 4.337 10 N -0.249 5.249 11 C 0.031 3.969 12 C -0.538 4.538 13 H 0.107 0.893 14 C -0.181 4.181 15 N -0.587 5.587 16 Si 0.745 3.255 17 H -0.199 1.199 18 H -0.220 1.220 19 H -0.182 1.182 20 C -0.057 4.057 21 C -0.058 4.058 22 N -0.265 5.265 23 C -0.112 4.112 24 C -0.011 4.011 25 O -0.323 6.323 26 C -0.008 4.008 27 C -0.113 4.113 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.175 0.825 34 H 0.206 0.794 35 H 0.159 0.841 36 H 0.033 0.967 37 H 0.021 0.979 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.048 0.952 41 H 0.078 0.922 42 H 0.044 0.956 43 H 0.049 0.951 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.082 0.918 48 H 0.133 0.867 49 H 0.105 0.895 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.825 16.274 6.669 18.237 hybrid contribution -2.269 -0.853 -0.116 2.426 sum 2.556 15.421 6.553 16.950 Atomic orbital electron populations 1.22403 0.97610 1.01724 1.02105 1.21401 0.92230 0.96437 0.89887 0.90162 1.20808 0.89800 1.04237 0.96599 1.18934 0.96974 0.93942 0.99586 1.20286 0.94239 0.99392 1.02637 1.25747 0.98689 1.01661 1.08502 1.83980 1.09009 1.15916 1.59998 1.25643 0.94803 1.04819 1.08440 1.61971 1.55632 1.04866 1.02473 1.20214 0.92278 0.88655 0.95767 1.21792 1.15890 0.96361 1.19712 0.89322 1.25556 0.99491 0.96386 0.96660 1.70016 1.43252 1.06157 1.39272 0.86141 0.81306 0.77022 0.81005 1.19896 1.21974 1.18207 1.21894 0.98221 0.95735 0.89890 1.21943 0.98652 0.95413 0.89744 1.62221 1.54513 1.06323 1.03473 1.22883 0.96006 0.91923 1.00390 1.22787 1.00947 0.94314 0.83038 1.87944 1.60580 1.37516 1.46231 1.22731 0.97300 0.84352 0.96430 1.22832 0.98765 0.98356 0.91353 0.90843 0.92653 0.93376 0.89503 0.90993 0.82467 0.79447 0.84114 0.96728 0.97922 0.93100 0.90449 0.95165 0.92167 0.95572 0.95051 0.88659 0.91751 0.86547 0.91786 0.86678 0.89545 0.94909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.61 8.26 71.98 0.59 -5.01 16 2 C 0.11 3.59 2.25 44.92 0.10 3.69 16 3 H 0.08 2.32 7.72 -2.39 -0.02 2.30 16 4 C -0.07 -2.70 4.67 29.85 0.14 -2.56 16 5 C -0.08 -2.91 4.84 -20.92 -0.10 -3.01 16 6 C -0.13 -3.77 9.98 21.22 0.21 -3.56 16 7 C -0.21 -5.46 11.23 66.72 0.75 -4.71 16 8 S 0.05 1.52 23.34 -56.49 -1.32 0.20 16 9 C -0.20 -7.93 10.48 66.72 0.70 -7.23 16 10 N -0.53 -19.41 4.17 -875.53 -3.65 -23.06 16 11 C 0.16 6.93 3.30 85.56 0.28 7.22 16 12 C -0.50 -25.93 7.66 25.60 0.20 -25.74 16 13 H 0.09 4.86 3.08 -2.91 -0.01 4.85 16 14 C 0.02 0.87 5.47 84.66 0.46 1.34 16 15 N -0.94 -56.52 13.96 21.45 0.30 -56.22 16 16 Si 0.92 43.13 27.36 68.60 1.88 45.01 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 19 H -0.26 -11.51 6.70 99.48 0.67 -10.84 16 20 C 0.07 2.22 4.65 86.30 0.40 2.62 16 21 C 0.07 2.24 4.93 86.30 0.43 2.66 16 22 N -0.54 -14.20 4.73 -895.21 -4.23 -18.44 16 23 C 0.02 0.36 5.44 86.32 0.47 0.83 16 24 C 0.07 1.24 7.01 72.02 0.50 1.75 16 25 O -0.40 -9.12 10.83 -148.98 -1.61 -10.73 16 26 C 0.07 1.36 7.01 72.01 0.50 1.86 16 27 C 0.02 0.36 5.64 86.31 0.49 0.85 16 28 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.05 1.59 7.37 -2.39 -0.02 1.57 16 30 H 0.05 1.80 6.00 -2.39 -0.01 1.78 16 31 H 0.09 3.99 4.40 -2.38 -0.01 3.98 16 32 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 34 H 0.19 3.47 8.06 -2.91 -0.02 3.44 16 35 H 0.14 6.70 5.64 -2.91 -0.02 6.68 16 36 H 0.01 0.68 5.30 -2.39 -0.01 0.67 16 37 H 0.00 0.14 4.28 -2.38 -0.01 0.13 16 38 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 39 H 0.08 2.15 6.20 -2.39 -0.01 2.13 16 40 H 0.03 0.95 7.44 -2.39 -0.02 0.94 16 41 H 0.06 2.16 6.14 -2.39 -0.01 2.14 16 42 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 43 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.10 1.97 6.38 -2.39 -0.02 1.95 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 48 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 50 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -61.97 383.84 -1.61 -63.58 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.90 Total: 28.67 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 6.13 Total: -29.01 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -7.58 Total: -97.71 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -1.61 Total: -10.73 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.88 Total: 45.01 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.32 Total: 0.20 kcal Total: -61.97 -1.61 -63.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542127533.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.512 kcal (2) G-P(sol) polarization free energy of solvation -61.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds