Wall clock time and date at job start Tue Mar 31 2020 22:18:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76201 * 102.99733 * 2 1 4 4 C 1.38994 * 120.08413 * 0.02582 * 3 2 1 5 5 C 1.38058 * 119.92002 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.07870 * 359.97438 * 5 4 3 7 7 C 1.38284 * 120.16623 * 359.74977 * 6 5 4 8 8 C 1.38103 * 120.07255 * 0.50555 * 7 6 5 9 9 C 1.50705 * 120.03770 * 179.76961 * 8 7 6 10 10 H 1.08998 * 109.47035 * 219.72032 * 9 8 7 11 11 C 1.53001 * 109.46905 * 99.72312 * 9 8 7 12 12 N 1.46900 * 109.46909 * 339.72272 * 9 8 7 13 13 C 1.46898 * 110.99589 * 204.99530 * 12 9 8 14 14 C 1.53001 * 109.46893 * 180.02562 * 13 12 9 15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12 17 17 C 1.53003 * 109.47376 * 180.02562 * 14 13 12 18 18 N 1.46900 * 109.47407 * 184.99739 * 17 14 13 19 19 C 1.46906 * 110.99546 * 66.04524 * 18 17 14 20 20 C 1.46894 * 111.00089 * 189.99447 * 18 17 14 21 21 C 1.50701 * 109.47049 * 170.00217 * 20 18 17 22 22 H 1.08000 * 119.99881 * 0.02562 * 21 20 18 23 23 C 1.37881 * 120.00015 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00075 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99779 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47087 * 90.00244 * 25 23 21 27 27 H 1.48505 * 109.46761 * 209.99680 * 25 23 21 28 28 H 1.48495 * 109.47549 * 329.99797 * 25 23 21 29 29 H 1.09008 * 109.47358 * 59.99580 * 1 2 3 30 30 H 1.09002 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46833 * 299.99804 * 1 2 3 32 32 H 1.07999 * 120.03594 * 359.95470 * 4 3 2 33 33 H 1.08000 * 119.95701 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.91989 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.96679 * 180.25136 * 7 6 5 36 36 H 1.09000 * 109.47144 * 300.00254 * 11 9 8 37 37 H 1.09002 * 109.47337 * 59.99945 * 11 9 8 38 38 H 1.09004 * 109.47057 * 180.02562 * 11 9 8 39 39 H 1.00904 * 110.99777 * 81.04797 * 12 9 8 40 40 H 1.08999 * 109.47049 * 60.00398 * 13 12 9 41 41 H 1.08997 * 109.47646 * 300.00448 * 13 12 9 42 42 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 43 43 H 1.09005 * 109.46682 * 304.99749 * 17 14 13 44 44 H 1.08999 * 109.47221 * 64.99915 * 17 14 13 45 45 H 1.08991 * 109.47276 * 60.00231 * 19 18 17 46 46 H 1.09005 * 109.46723 * 179.97438 * 19 18 17 47 47 H 1.09001 * 109.47097 * 299.99420 * 19 18 17 48 48 H 1.08995 * 109.47552 * 290.00132 * 20 18 17 49 49 H 1.09000 * 109.46814 * 50.00455 * 20 18 17 50 50 H 0.96996 * 120.00172 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0106 0.0011 6 6 2.8329 4.4131 0.0016 7 6 3.8456 3.4715 0.0068 8 6 3.5386 2.1250 0.0010 9 6 4.6429 1.0995 0.0014 10 1 4.3737 0.2754 -0.6592 11 6 4.8456 0.5690 1.4221 12 7 5.8875 1.7200 -0.4718 13 6 6.7926 0.7143 -1.0440 14 6 8.0750 1.3968 -1.5242 15 1 8.5628 1.8873 -0.6819 16 8 7.7527 2.3694 -2.5204 17 6 9.0175 0.3495 -2.1208 18 7 10.2950 0.9839 -2.4723 19 6 11.0017 1.4457 -1.2700 20 6 11.1360 0.0729 -3.2600 21 6 12.3191 0.8288 -3.8077 22 1 12.4348 1.8806 -3.5918 23 6 13.2538 0.1775 -4.5844 24 7 14.2860 0.8372 -5.0628 25 14 13.0532 -1.6417 -4.9583 26 1 12.2660 -1.8066 -6.2067 27 1 14.3914 -2.2619 -5.1314 28 1 12.3429 -2.3028 -3.8342 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.1617 2.3526 0.0002 33 1 0.7212 4.7488 0.0011 34 1 3.0759 5.4654 0.0024 35 1 4.8777 3.7893 0.0113 36 1 5.1148 1.3931 2.0828 37 1 3.9221 0.1086 1.7733 38 1 5.6447 -0.1724 1.4226 39 1 6.3401 2.2337 0.2694 40 1 6.3046 0.2235 -1.8861 41 1 7.0387 -0.0273 -0.2842 42 1 7.3150 2.0029 -3.3009 43 1 9.1927 -0.4399 -1.3898 44 1 8.5657 -0.0779 -3.0160 45 1 11.2013 0.5961 -0.6171 46 1 11.9442 1.9109 -1.5588 47 1 10.3841 2.1724 -0.7422 48 1 11.4869 -0.7394 -2.6235 49 1 10.5535 -0.3375 -4.0848 50 1 14.9434 0.3791 -5.6096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564205309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:08 Heat of formation + Delta-G solvation = -14.501511 kcal Electronic energy + Delta-G solvation = -26732.188263 eV Core-core repulsion = 23078.661522 eV Total energy + Delta-G solvation = -3653.526742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.79346 -38.31308 -36.62833 -35.34452 -32.47796 -32.17468 -31.56125 -29.83640 -29.28245 -28.76624 -27.53067 -25.86157 -24.05590 -23.37080 -22.72472 -21.28168 -20.73541 -20.06886 -17.99001 -16.94295 -16.67261 -16.22536 -15.92031 -15.55709 -15.18501 -14.85390 -14.62691 -14.43475 -14.33548 -14.31860 -14.14962 -13.99286 -13.66776 -13.45916 -13.23516 -12.87042 -12.69550 -12.64935 -12.42608 -12.26944 -11.92488 -11.87533 -11.60843 -11.47294 -11.28027 -11.18130 -10.96424 -10.76268 -10.51536 -10.44239 -10.26570 -9.99817 -9.97380 -9.50693 -9.20561 -9.02761 -8.56966 -8.55230 -7.71101 -7.31372 -6.03030 -4.00075 0.96074 1.12453 1.17666 2.05133 3.28791 3.36068 3.37469 3.44042 3.79447 4.42898 4.43415 4.58511 4.60574 4.61296 4.65579 4.78257 4.82617 4.91741 4.94597 5.09755 5.10937 5.18226 5.24570 5.27766 5.32100 5.37360 5.48329 5.51685 5.54638 5.62389 5.63782 5.78238 5.87867 5.95394 6.01155 6.11186 6.21128 6.23652 6.28716 6.33698 6.67041 6.69395 6.85056 6.87018 7.00174 7.17274 7.60311 7.91494 8.01902 8.15987 8.68364 9.06718 9.58485 11.10135 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002014 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.436355 B =13899.129117 C =14548.643227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 S -0.115 6.115 3 C -0.087 4.087 4 C -0.136 4.136 5 C -0.108 4.108 6 C -0.125 4.125 7 C -0.076 4.076 8 C -0.049 4.049 9 C 0.121 3.879 10 H 0.091 0.909 11 C -0.180 4.180 12 N -0.669 5.669 13 C 0.027 3.973 14 C 0.118 3.882 15 H 0.094 0.906 16 O -0.534 6.534 17 C 0.022 3.978 18 N -0.520 5.520 19 C 0.035 3.965 20 C 0.162 3.838 21 C -0.507 4.507 22 H 0.082 0.918 23 C 0.067 3.933 24 N -0.900 5.900 25 Si 0.875 3.125 26 H -0.276 1.276 27 H -0.286 1.286 28 H -0.269 1.269 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.137 0.863 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.342 0.658 40 H 0.076 0.924 41 H 0.037 0.963 42 H 0.369 0.631 43 H 0.027 0.973 44 H 0.070 0.930 45 H 0.008 0.992 46 H 0.081 0.919 47 H 0.050 0.950 48 H -0.014 1.014 49 H 0.022 0.978 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.163 0.373 14.691 33.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.127 5.873 3 C -0.199 4.199 4 C -0.160 4.160 5 C -0.128 4.128 6 C -0.145 4.145 7 C -0.096 4.096 8 C -0.055 4.055 9 C 0.010 3.990 10 H 0.109 0.891 11 C -0.239 4.239 12 N -0.299 5.299 13 C -0.103 4.103 14 C 0.057 3.943 15 H 0.111 0.889 16 O -0.338 6.338 17 C -0.108 4.108 18 N -0.243 5.243 19 C -0.113 4.113 20 C 0.036 3.964 21 C -0.545 4.545 22 H 0.100 0.900 23 C -0.135 4.135 24 N -0.539 5.539 25 Si 0.703 3.297 26 H -0.201 1.201 27 H -0.212 1.212 28 H -0.194 1.194 29 H 0.102 0.898 30 H 0.125 0.875 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.161 0.839 40 H 0.094 0.906 41 H 0.055 0.945 42 H 0.215 0.785 43 H 0.045 0.955 44 H 0.089 0.911 45 H 0.027 0.973 46 H 0.099 0.901 47 H 0.068 0.932 48 H 0.004 0.996 49 H 0.040 0.960 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -29.437 0.260 14.098 32.640 hybrid contribution -0.695 -1.528 0.598 1.783 sum -30.133 -1.268 14.696 33.549 Atomic orbital electron populations 1.23705 0.95549 1.06976 1.05540 1.85512 1.05750 1.03522 1.92494 1.21526 0.96004 0.96279 1.06132 1.21047 0.97802 0.93270 1.03862 1.21012 0.96745 0.95118 0.99879 1.21248 0.92725 0.99834 1.00690 1.21034 1.00106 0.91519 0.96966 1.19430 0.91286 0.94824 0.99947 1.20403 0.88984 0.94160 0.95409 0.89098 1.22482 1.02882 1.01622 0.96894 1.60445 1.05349 1.26415 1.37738 1.22757 0.94436 0.93705 0.99428 1.21851 0.91147 0.89691 0.91605 0.88865 1.86601 1.81352 1.35102 1.30711 1.22788 0.93382 0.95170 0.99474 1.61848 1.03100 1.39793 1.19581 1.22293 0.99824 0.98212 0.91003 1.20194 0.92883 0.91093 0.92271 1.21042 1.04511 0.98284 1.30693 0.90036 1.24913 0.95135 0.97827 0.95584 1.69895 1.12505 1.36268 1.35266 0.86865 0.77532 0.86226 0.79121 1.20146 1.21219 1.19417 0.89825 0.87520 0.89867 0.86180 0.86034 0.85809 0.84555 0.92231 0.91055 0.92120 0.83884 0.90605 0.94464 0.78527 0.95480 0.91108 0.97337 0.90077 0.93178 0.99617 0.95973 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.15 101.05 0.92 0.16 16 2 S -0.12 -0.96 19.96 -107.50 -2.15 -3.11 16 3 C -0.09 -0.83 6.11 -39.03 -0.24 -1.07 16 4 C -0.14 -1.16 9.36 -39.37 -0.37 -1.53 16 5 C -0.11 -0.88 10.04 -39.62 -0.40 -1.27 16 6 C -0.12 -1.09 10.04 -39.53 -0.40 -1.48 16 7 C -0.08 -0.75 9.32 -39.61 -0.37 -1.12 16 8 C -0.05 -0.49 5.10 -104.40 -0.53 -1.02 16 9 C 0.12 1.16 2.23 -68.86 -0.15 1.01 16 10 H 0.09 0.96 6.91 -51.93 -0.36 0.60 16 11 C -0.18 -1.53 9.08 37.16 0.34 -1.19 16 12 N -0.67 -6.81 4.96 -107.95 -0.54 -7.35 16 13 C 0.03 0.29 5.15 -3.82 -0.02 0.27 16 14 C 0.12 1.60 3.13 -26.73 -0.08 1.52 16 15 H 0.09 1.31 6.34 -51.93 -0.33 0.98 16 16 O -0.53 -8.25 13.15 -35.23 -0.46 -8.71 16 17 C 0.02 0.35 4.59 -3.82 -0.02 0.34 16 18 N -0.52 -10.96 4.70 -244.37 -1.15 -12.11 16 19 C 0.04 0.68 9.14 60.07 0.55 1.23 16 20 C 0.16 3.97 3.79 -4.98 -0.02 3.96 16 21 C -0.51 -14.62 9.01 -34.44 -0.31 -14.93 16 22 H 0.08 2.57 7.37 -52.49 -0.39 2.18 16 23 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 24 N -0.90 -27.85 13.96 55.43 0.77 -27.07 16 25 Si 0.88 21.66 27.47 -169.99 -4.67 17.00 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 29 H 0.08 0.40 7.75 -51.92 -0.40 -0.01 16 30 H 0.11 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.37 7.75 -51.92 -0.40 -0.04 16 32 H 0.12 0.78 5.88 -52.49 -0.31 0.47 16 33 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 34 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.14 1.31 6.84 -52.49 -0.36 0.95 16 36 H 0.06 0.49 8.13 -51.93 -0.42 0.06 16 37 H 0.07 0.61 7.11 -51.93 -0.37 0.24 16 38 H 0.06 0.50 7.45 -51.93 -0.39 0.12 16 39 H 0.34 3.29 8.00 -39.29 -0.31 2.98 16 40 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 41 H 0.04 0.38 7.43 -51.93 -0.39 -0.01 16 42 H 0.37 4.81 9.05 45.56 0.41 5.23 16 43 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 44 H 0.07 1.12 7.93 -51.93 -0.41 0.71 16 45 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.08 1.77 6.76 -51.93 -0.35 1.42 16 47 H 0.05 0.84 6.37 -51.93 -0.33 0.51 16 48 H -0.01 -0.34 7.18 -51.93 -0.37 -0.72 16 49 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 404.16 15.07 6.09 6.09 Total: -1.00 -32.71 404.16 -10.85 -43.56 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.56 Total: 5.00 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.19 Total: -13.29 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.91 Total: -46.53 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.46 Total: -8.71 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: -0.96 SS G_CDS: -2.15 Total: -3.11 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.71 -10.85 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564205309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.056 kcal (2) G-P(sol) polarization free energy of solvation -32.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds