Wall clock time and date at job start Tue Mar 31 2020 22:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76201 * 102.99733 * 2 1 4 4 C 1.38994 * 120.08413 * 0.02582 * 3 2 1 5 5 C 1.38058 * 119.92002 * 179.97438 * 4 3 2 6 6 C 1.38322 * 120.07870 * 359.97438 * 5 4 3 7 7 C 1.38284 * 120.16623 * 359.74977 * 6 5 4 8 8 C 1.38103 * 120.07255 * 0.50555 * 7 6 5 9 9 C 1.50705 * 120.03770 * 179.76961 * 8 7 6 10 10 H 1.08998 * 109.47035 * 219.72032 * 9 8 7 11 11 C 1.53001 * 109.46905 * 99.72312 * 9 8 7 12 12 N 1.46900 * 109.46909 * 339.72272 * 9 8 7 13 13 C 1.46898 * 110.99589 * 204.99530 * 12 9 8 14 14 C 1.53001 * 109.46893 * 180.02562 * 13 12 9 15 15 H 1.08999 * 109.47164 * 60.00204 * 14 13 12 16 16 O 1.42903 * 109.47171 * 299.99938 * 14 13 12 17 17 C 1.53003 * 109.47376 * 180.02562 * 14 13 12 18 18 N 1.46900 * 109.47407 * 184.99739 * 17 14 13 19 19 C 1.46906 * 110.99546 * 66.04524 * 18 17 14 20 20 C 1.46894 * 111.00089 * 189.99447 * 18 17 14 21 21 C 1.50701 * 109.47049 * 170.00217 * 20 18 17 22 22 H 1.08000 * 119.99881 * 0.02562 * 21 20 18 23 23 C 1.37881 * 120.00015 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00075 * 179.97438 * 23 21 20 25 25 Si 1.86801 * 119.99779 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47087 * 90.00244 * 25 23 21 27 27 H 1.48505 * 109.46761 * 209.99680 * 25 23 21 28 28 H 1.48495 * 109.47549 * 329.99797 * 25 23 21 29 29 H 1.09008 * 109.47358 * 59.99580 * 1 2 3 30 30 H 1.09002 * 109.46951 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46833 * 299.99804 * 1 2 3 32 32 H 1.07999 * 120.03594 * 359.95470 * 4 3 2 33 33 H 1.08000 * 119.95701 * 179.97438 * 5 4 3 34 34 H 1.08004 * 119.91989 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.96679 * 180.25136 * 7 6 5 36 36 H 1.09000 * 109.47144 * 300.00254 * 11 9 8 37 37 H 1.09002 * 109.47337 * 59.99945 * 11 9 8 38 38 H 1.09004 * 109.47057 * 180.02562 * 11 9 8 39 39 H 1.00904 * 110.99777 * 81.04797 * 12 9 8 40 40 H 1.08999 * 109.47049 * 60.00398 * 13 12 9 41 41 H 1.08997 * 109.47646 * 300.00448 * 13 12 9 42 42 H 0.96700 * 114.00311 * 300.00378 * 16 14 13 43 43 H 1.09005 * 109.46682 * 304.99749 * 17 14 13 44 44 H 1.08999 * 109.47221 * 64.99915 * 17 14 13 45 45 H 1.08991 * 109.47276 * 60.00231 * 19 18 17 46 46 H 1.09005 * 109.46723 * 179.97438 * 19 18 17 47 47 H 1.09001 * 109.47097 * 299.99420 * 19 18 17 48 48 H 1.08995 * 109.47552 * 290.00132 * 20 18 17 49 49 H 1.09000 * 109.46814 * 50.00455 * 20 18 17 50 50 H 0.96996 * 120.00172 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1951 2.6662 0.0005 5 6 1.5095 4.0106 0.0011 6 6 2.8329 4.4131 0.0016 7 6 3.8456 3.4715 0.0068 8 6 3.5386 2.1250 0.0010 9 6 4.6429 1.0995 0.0014 10 1 4.3737 0.2754 -0.6592 11 6 4.8456 0.5690 1.4221 12 7 5.8875 1.7200 -0.4718 13 6 6.7926 0.7143 -1.0440 14 6 8.0750 1.3968 -1.5242 15 1 8.5628 1.8873 -0.6819 16 8 7.7527 2.3694 -2.5204 17 6 9.0175 0.3495 -2.1208 18 7 10.2950 0.9839 -2.4723 19 6 11.0017 1.4457 -1.2700 20 6 11.1360 0.0729 -3.2600 21 6 12.3191 0.8288 -3.8077 22 1 12.4348 1.8806 -3.5918 23 6 13.2538 0.1775 -4.5844 24 7 14.2860 0.8372 -5.0628 25 14 13.0532 -1.6417 -4.9583 26 1 12.2660 -1.8066 -6.2067 27 1 14.3914 -2.2619 -5.1314 28 1 12.3429 -2.3028 -3.8342 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.1617 2.3526 0.0002 33 1 0.7212 4.7488 0.0011 34 1 3.0759 5.4654 0.0024 35 1 4.8777 3.7893 0.0113 36 1 5.1148 1.3931 2.0828 37 1 3.9221 0.1086 1.7733 38 1 5.6447 -0.1724 1.4226 39 1 6.3401 2.2337 0.2694 40 1 6.3046 0.2235 -1.8861 41 1 7.0387 -0.0273 -0.2842 42 1 7.3150 2.0029 -3.3009 43 1 9.1927 -0.4399 -1.3898 44 1 8.5657 -0.0779 -3.0160 45 1 11.2013 0.5961 -0.6171 46 1 11.9442 1.9109 -1.5588 47 1 10.3841 2.1724 -0.7422 48 1 11.4869 -0.7394 -2.6235 49 1 10.5535 -0.3375 -4.0848 50 1 14.9434 0.3791 -5.6096 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564205309.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:07 Heat of formation + Delta-G solvation = -38.048219 kcal Electronic energy + Delta-G solvation = -26733.209325 eV Core-core repulsion = 23078.661522 eV Total energy + Delta-G solvation = -3654.547804 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.48515 -39.48901 -37.73041 -36.60868 -34.59072 -33.05914 -32.17791 -31.01347 -29.96891 -29.65854 -29.05469 -27.22752 -25.22849 -24.25082 -23.58530 -22.50304 -21.86860 -21.34622 -19.02633 -18.64370 -17.57220 -17.08660 -16.98305 -16.60290 -16.44054 -16.01597 -15.83756 -15.69589 -15.32503 -15.14306 -14.90659 -14.75206 -14.58302 -14.53414 -14.36208 -14.13921 -13.88526 -13.53853 -13.33612 -13.30319 -13.10615 -12.96616 -12.70240 -12.55858 -12.48803 -12.40372 -12.29930 -12.12753 -11.91321 -11.90839 -11.60521 -11.48219 -11.03194 -10.78202 -10.65401 -10.60451 -9.69601 -9.34974 -8.95143 -8.33124 -8.27700 -6.31261 0.30486 0.47098 0.62257 1.34462 1.36180 1.46669 1.52288 2.34417 2.76550 2.88323 3.05079 3.37487 3.73210 3.79580 3.94365 3.98697 4.12717 4.16358 4.25907 4.25976 4.27422 4.30698 4.33233 4.42035 4.49950 4.51727 4.60475 4.64755 4.67841 4.75794 4.78241 4.82735 4.89374 4.90109 4.90675 5.02212 5.12376 5.14663 5.21403 5.26294 5.37445 5.53020 5.53889 5.63022 5.98113 6.02792 6.09568 6.36405 6.40487 6.67263 6.75371 7.06738 7.32060 8.89074 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020577 B = 0.002014 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.436355 B =13899.129117 C =14548.643227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.146 6.146 3 C -0.098 4.098 4 C -0.142 4.142 5 C -0.111 4.111 6 C -0.134 4.134 7 C -0.091 4.091 8 C -0.065 4.065 9 C 0.129 3.871 10 H 0.082 0.918 11 C -0.173 4.173 12 N -0.674 5.674 13 C 0.039 3.961 14 C 0.128 3.872 15 H 0.090 0.910 16 O -0.555 6.555 17 C 0.022 3.978 18 N -0.541 5.541 19 C 0.040 3.960 20 C 0.172 3.828 21 C -0.516 4.516 22 H 0.035 0.965 23 C 0.004 3.996 24 N -0.949 5.949 25 Si 0.951 3.049 26 H -0.264 1.264 27 H -0.282 1.282 28 H -0.251 1.251 29 H 0.089 0.911 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.139 0.861 33 H 0.145 0.855 34 H 0.138 0.862 35 H 0.132 0.868 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.345 0.655 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.377 0.623 43 H 0.041 0.959 44 H 0.076 0.924 45 H 0.021 0.979 46 H 0.044 0.956 47 H 0.076 0.924 48 H -0.013 1.013 49 H 0.028 0.972 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.913 -1.232 15.508 36.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.096 5.904 3 C -0.211 4.211 4 C -0.166 4.166 5 C -0.130 4.130 6 C -0.154 4.154 7 C -0.111 4.111 8 C -0.071 4.071 9 C 0.018 3.982 10 H 0.099 0.901 11 C -0.232 4.232 12 N -0.305 5.305 13 C -0.090 4.090 14 C 0.068 3.932 15 H 0.108 0.892 16 O -0.360 6.360 17 C -0.107 4.107 18 N -0.265 5.265 19 C -0.108 4.108 20 C 0.045 3.955 21 C -0.555 4.555 22 H 0.053 0.947 23 C -0.193 4.193 24 N -0.590 5.590 25 Si 0.774 3.226 26 H -0.189 1.189 27 H -0.207 1.207 28 H -0.175 1.175 29 H 0.108 0.892 30 H 0.140 0.860 31 H 0.111 0.889 32 H 0.157 0.843 33 H 0.163 0.837 34 H 0.156 0.844 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.165 0.835 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.039 0.961 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.005 0.995 49 H 0.046 0.954 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -32.216 -1.338 14.934 35.535 hybrid contribution 0.089 -0.903 0.374 0.981 sum -32.127 -2.241 15.308 35.658 Atomic orbital electron populations 1.23786 0.92566 1.08219 1.06328 1.85565 1.09101 1.03233 1.92499 1.21691 0.96134 0.96989 1.06238 1.21361 0.98596 0.93347 1.03280 1.21335 0.97123 0.95622 0.98964 1.21500 0.92952 1.00488 1.00445 1.21116 1.00321 0.91865 0.97815 1.19550 0.91799 0.95007 1.00780 1.20296 0.88463 0.93750 0.95654 0.90051 1.22407 1.02873 1.01628 0.96265 1.60396 1.05474 1.26424 1.38175 1.22549 0.93077 0.93597 0.99821 1.21758 0.91881 0.88746 0.90862 0.89186 1.86571 1.81600 1.36245 1.31576 1.22896 0.91291 0.96151 1.00361 1.61729 1.04345 1.39895 1.20482 1.22212 0.98694 0.99059 0.90811 1.19946 0.91826 0.90925 0.92822 1.21278 1.06541 0.96717 1.30927 0.94672 1.25907 0.94552 1.03552 0.95298 1.70060 1.13726 1.38758 1.36414 0.85666 0.77939 0.79272 0.79728 1.18915 1.20741 1.17457 0.89188 0.86050 0.88867 0.84287 0.83708 0.84374 0.84968 0.92065 0.91210 0.91815 0.83541 0.90392 0.93296 0.77500 0.94053 0.90537 0.96077 0.93659 0.90560 0.99525 0.95382 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.15 113.37 1.04 -0.10 16 2 S -0.15 -2.27 19.96 -56.49 -1.13 -3.40 16 3 C -0.10 -1.77 6.11 22.62 0.14 -1.63 16 4 C -0.14 -2.17 9.36 22.41 0.21 -1.96 16 5 C -0.11 -1.60 10.04 22.25 0.22 -1.38 16 6 C -0.13 -2.18 10.04 22.30 0.22 -1.95 16 7 C -0.09 -1.75 9.32 22.25 0.21 -1.54 16 8 C -0.07 -1.27 5.10 -19.72 -0.10 -1.37 16 9 C 0.13 2.35 2.23 44.17 0.10 2.45 16 10 H 0.08 1.65 6.91 -2.39 -0.02 1.63 16 11 C -0.17 -2.75 9.08 71.98 0.65 -2.09 16 12 N -0.67 -12.94 4.96 -495.45 -2.46 -15.40 16 13 C 0.04 0.78 5.15 86.30 0.44 1.22 16 14 C 0.13 3.27 3.13 30.60 0.10 3.36 16 15 H 0.09 2.37 6.34 -2.39 -0.02 2.35 16 16 O -0.55 -16.61 13.15 -148.98 -1.96 -18.57 16 17 C 0.02 0.67 4.59 86.30 0.40 1.07 16 18 N -0.54 -22.49 4.70 -927.05 -4.36 -26.85 16 19 C 0.04 1.57 9.14 127.69 1.17 2.74 16 20 C 0.17 8.34 3.79 85.56 0.32 8.66 16 21 C -0.52 -30.56 9.01 25.60 0.23 -30.33 16 22 H 0.03 2.34 7.37 -2.91 -0.02 2.32 16 23 C 0.00 0.23 5.47 84.66 0.46 0.69 16 24 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 25 Si 0.95 44.43 27.47 68.60 1.88 46.31 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 29 H 0.09 0.64 7.75 -2.39 -0.02 0.62 16 30 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.09 0.59 7.75 -2.39 -0.02 0.57 16 32 H 0.14 1.47 5.88 -2.91 -0.02 1.45 16 33 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 35 H 0.13 2.52 6.84 -2.91 -0.02 2.50 16 36 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 37 H 0.07 1.14 7.11 -2.39 -0.02 1.12 16 38 H 0.06 0.96 7.45 -2.38 -0.02 0.94 16 39 H 0.35 6.26 8.00 -89.69 -0.72 5.54 16 40 H 0.08 1.53 8.06 -2.39 -0.02 1.51 16 41 H 0.05 0.87 7.43 -2.39 -0.02 0.85 16 42 H 0.38 9.51 9.05 -74.06 -0.67 8.84 16 43 H 0.04 1.18 8.12 -2.38 -0.02 1.16 16 44 H 0.08 2.26 7.93 -2.39 -0.02 2.24 16 45 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.04 2.05 6.76 -2.38 -0.02 2.04 16 47 H 0.08 2.51 6.37 -2.39 -0.02 2.50 16 48 H -0.01 -0.62 7.18 -2.39 -0.02 -0.63 16 49 H 0.03 1.33 7.36 -2.39 -0.02 1.31 16 50 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 Total: -1.00 -72.08 404.16 -2.41 -74.49 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: -0.50 Total: 25.60 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 5.81 Total: -22.16 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -6.52 Total: -102.27 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -1.96 Total: -18.57 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -1.13 Total: -3.40 kcal Total: -72.08 -2.41 -74.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564205309.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.439 kcal (2) G-P(sol) polarization free energy of solvation -72.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds