Wall clock time and date at job start Tue Mar 31 2020 22:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.80886 * 2 1 4 4 O 1.43771 * 110.74846 * 236.68191 * 2 1 3 5 5 C 1.36135 * 109.24225 * 213.92447 * 4 2 1 6 6 C 1.39250 * 129.86699 * 198.41789 * 5 4 2 7 7 C 1.38148 * 120.22085 * 181.01924 * 6 5 4 8 8 F 1.35102 * 119.85046 * 179.97438 * 7 6 5 9 9 C 1.38516 * 120.29911 * 359.95664 * 7 6 5 10 10 C 1.38314 * 119.74033 * 359.85119 * 9 7 6 11 11 C 1.37756 * 120.00791 * 0.02562 * 10 9 7 12 12 C 1.51654 * 132.13638 * 180.35813 * 11 10 9 13 13 H 1.09000 * 110.94090 * 46.42709 * 12 11 10 14 14 N 1.46895 * 110.93892 * 282.74279 * 12 11 10 15 15 C 1.46901 * 111.00317 * 86.45190 * 14 12 11 16 16 C 1.52995 * 109.47619 * 179.97438 * 15 14 12 17 17 H 1.09004 * 109.46845 * 59.99858 * 16 15 14 18 18 O 1.42904 * 109.47028 * 300.00415 * 16 15 14 19 19 C 1.53001 * 109.47427 * 180.02562 * 16 15 14 20 20 N 1.46897 * 109.47034 * 180.46390 * 19 16 15 21 21 C 1.46904 * 110.99825 * 199.85278 * 20 19 16 22 22 C 1.46900 * 111.00230 * 75.90012 * 20 19 16 23 23 C 1.50699 * 109.47109 * 190.00174 * 22 20 19 24 24 H 1.08001 * 120.00180 * 359.97438 * 23 22 20 25 25 C 1.37877 * 119.99575 * 180.02562 * 23 22 20 26 26 N 1.31514 * 120.00603 * 359.97438 * 25 23 22 27 27 Si 1.86809 * 119.99613 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47037 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47075 * 119.99650 * 27 25 23 30 30 H 1.48493 * 109.46763 * 239.99407 * 27 25 23 31 31 H 1.08999 * 109.47373 * 296.68931 * 1 2 3 32 32 H 1.09003 * 109.46756 * 56.68649 * 1 2 3 33 33 H 1.08994 * 109.47243 * 176.67977 * 1 2 3 34 34 H 1.07992 * 119.88593 * 0.97820 * 6 5 4 35 35 H 1.07996 * 120.13095 * 179.83605 * 9 7 6 36 36 H 1.07997 * 119.99613 * 179.97438 * 10 9 7 37 37 H 1.00907 * 111.00357 * 210.40962 * 14 12 11 38 38 H 1.08997 * 109.47153 * 300.00383 * 15 14 12 39 39 H 1.09002 * 109.46614 * 59.99897 * 15 14 12 40 40 H 0.96702 * 114.00170 * 299.99225 * 18 16 15 41 41 H 1.08999 * 109.46823 * 300.46548 * 19 16 15 42 42 H 1.09002 * 109.46805 * 60.46501 * 19 16 15 43 43 H 1.08996 * 109.47053 * 64.82185 * 21 20 19 44 44 H 1.08999 * 109.46953 * 184.82195 * 21 20 19 45 45 H 1.09000 * 109.47114 * 304.82356 * 21 20 19 46 46 H 1.09002 * 109.46859 * 309.99891 * 22 20 19 47 47 H 1.08989 * 109.47213 * 69.99562 * 22 20 19 48 48 H 0.96999 * 120.00185 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 8 2.0394 -0.7385 -1.1235 5 6 3.1956 -1.3608 -0.7643 6 6 4.2099 -1.8880 -1.5597 7 6 5.3011 -2.5035 -0.9776 8 9 6.2806 -3.0128 -1.7564 9 6 5.3958 -2.6005 0.4010 10 6 4.3934 -2.0752 1.1962 11 6 3.3060 -1.4590 0.6169 12 6 2.0778 -0.7951 1.2090 13 1 2.3519 -0.1247 2.0235 14 7 1.1056 -1.7987 1.6623 15 6 1.3982 -2.2328 3.0348 16 6 0.3666 -3.2751 3.4710 17 1 0.4119 -4.1336 2.8010 18 8 -0.9410 -2.7007 3.4216 19 6 0.6710 -3.7267 4.9008 20 7 -0.3130 -4.7355 5.3156 21 6 -0.3638 -4.8507 6.7792 22 6 -0.0274 -6.0359 4.6948 23 6 -1.1809 -6.9740 4.9407 24 1 -2.0400 -6.6380 5.5024 25 6 -1.1389 -8.2617 4.4495 26 7 -0.0926 -8.6710 3.7659 27 14 -2.5684 -9.4248 4.7549 28 1 -3.6146 -8.7267 5.5444 29 1 -3.1378 -9.8615 3.4547 30 1 -2.0890 -10.6110 5.5087 31 1 -0.3634 0.4616 0.9181 32 1 -0.3633 0.5644 -0.8588 33 1 -0.3633 -1.0259 -0.0595 34 1 4.1428 -1.8159 -2.6351 35 1 6.2488 -3.0846 0.8530 36 1 4.4627 -2.1490 2.2714 37 1 0.1623 -1.4483 1.5872 38 1 2.3957 -2.6705 3.0726 39 1 1.3525 -1.3743 3.7049 40 1 -1.0541 -1.9301 3.9948 41 1 1.6716 -4.1571 4.9406 42 1 0.6173 -2.8694 5.5718 43 1 -0.7280 -3.9158 7.2049 44 1 -1.0362 -5.6625 7.0566 45 1 0.6352 -5.0594 7.1622 46 1 0.1109 -5.9036 3.6217 47 1 0.8803 -6.4544 5.1292 48 1 -0.0633 -9.5768 3.4201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577502988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:57 Heat of formation + Delta-G solvation = -82.678384 kcal Electronic energy + Delta-G solvation = -29598.824882 eV Core-core repulsion = 25376.128593 eV Total energy + Delta-G solvation = -4222.696289 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.11277 -41.58607 -38.26404 -37.57538 -36.12239 -35.09003 -32.47782 -32.00804 -31.04876 -30.49260 -29.14209 -27.28876 -26.51523 -25.16893 -23.44017 -23.10906 -21.97596 -21.50751 -21.19405 -20.04397 -18.25197 -17.49675 -16.92499 -16.51342 -16.33488 -16.11603 -15.87940 -15.72430 -15.25901 -14.93173 -14.79914 -14.62057 -14.34427 -14.13777 -13.86037 -13.61308 -13.29443 -13.21883 -12.91138 -12.71032 -12.54630 -12.46077 -12.06289 -11.98065 -11.87225 -11.51642 -11.43854 -11.22055 -11.14364 -10.99228 -10.89495 -10.70618 -10.61382 -10.34648 -9.76115 -9.65897 -9.12278 -9.10151 -8.66532 -8.40667 -8.39601 -7.21029 -5.99079 -3.99739 0.86563 1.02973 2.77611 3.23280 3.33913 3.41281 3.46147 3.81501 4.05491 4.11697 4.22967 4.45834 4.53144 4.67148 4.74807 4.76091 4.78185 4.84196 4.91902 5.07090 5.18622 5.23639 5.33668 5.34761 5.38682 5.48467 5.54982 5.65596 5.71390 5.74867 5.83767 5.85500 5.95081 6.00710 6.11207 6.12628 6.30503 6.33009 6.48887 6.70752 6.76515 6.86853 7.21481 7.29908 7.33155 7.82125 8.02806 8.11869 8.21979 8.57246 9.07614 9.64150 11.12012 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.002708 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.604490 B =10337.914254 C =11385.143100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.080 3.920 3 H 0.093 0.907 4 O -0.290 6.290 5 C 0.150 3.850 6 C -0.181 4.181 7 C 0.136 3.864 8 F -0.135 7.135 9 C -0.183 4.183 10 C -0.032 4.032 11 C -0.167 4.167 12 C 0.101 3.899 13 H 0.070 0.930 14 N -0.669 5.669 15 C 0.029 3.971 16 C 0.117 3.883 17 H 0.112 0.888 18 O -0.540 6.540 19 C 0.027 3.973 20 N -0.530 5.530 21 C 0.038 3.962 22 C 0.192 3.808 23 C -0.504 4.504 24 H 0.063 0.937 25 C 0.055 3.945 26 N -0.899 5.899 27 Si 0.897 3.103 28 H -0.272 1.272 29 H -0.284 1.284 30 H -0.286 1.286 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.357 0.643 38 H 0.079 0.921 39 H 0.031 0.969 40 H 0.358 0.642 41 H 0.033 0.967 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.007 0.993 46 H 0.032 0.968 47 H -0.012 1.012 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 21.597 -5.453 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.110 0.890 4 O -0.204 6.204 5 C 0.103 3.897 6 C -0.201 4.201 7 C 0.117 3.883 8 F -0.113 7.113 9 C -0.202 4.202 10 C -0.051 4.051 11 C -0.169 4.169 12 C -0.009 4.009 13 H 0.088 0.912 14 N -0.306 5.306 15 C -0.101 4.101 16 C 0.057 3.943 17 H 0.129 0.871 18 O -0.342 6.342 19 C -0.103 4.103 20 N -0.254 5.254 21 C -0.111 4.111 22 C 0.067 3.933 23 C -0.543 4.543 24 H 0.082 0.918 25 C -0.146 4.146 26 N -0.538 5.538 27 Si 0.725 3.275 28 H -0.197 1.197 29 H -0.210 1.210 30 H -0.212 1.212 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.182 0.818 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.203 0.797 41 H 0.051 0.949 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.026 0.974 46 H 0.050 0.950 47 H 0.006 0.994 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.527 20.569 -6.657 23.240 hybrid contribution 0.318 -0.006 1.287 1.326 sum 8.845 20.563 -5.369 23.020 Atomic orbital electron populations 1.21915 0.91694 1.04880 1.03258 1.23526 0.96443 0.94644 0.83044 0.88953 1.86877 1.33961 1.62085 1.37443 1.19007 0.86070 0.92489 0.92117 1.19961 0.92927 1.06319 1.00868 1.17105 0.86196 0.96577 0.88436 1.91518 1.60184 1.84750 1.74866 1.21004 1.02089 1.05591 0.91491 1.20125 0.91094 0.93770 1.00076 1.20683 0.96929 1.05587 0.93709 1.21601 0.90565 0.91879 0.96831 0.91195 1.60400 1.06319 1.40348 1.23561 1.22758 1.01205 0.98124 0.88004 1.21969 0.81155 0.94831 0.96343 0.87077 1.86715 1.31344 1.48433 1.67734 1.22646 0.94928 0.96623 0.96095 1.62031 1.46536 1.09884 1.06994 1.22226 0.99246 1.00900 0.88725 1.19774 0.95563 0.83273 0.94668 1.21178 1.03460 0.95609 1.34043 0.91847 1.24987 0.96108 0.98232 0.95321 1.69965 1.29068 1.18008 1.36806 0.86458 0.82479 0.80620 0.77965 1.19674 1.20976 1.21198 0.90214 0.90794 0.89497 0.84249 0.84172 0.84942 0.81790 0.90299 0.95123 0.79714 0.94916 0.92370 0.93828 0.90423 0.97431 0.95035 0.99428 0.93013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 8.36 37.16 0.31 -0.89 16 2 C 0.08 0.70 4.23 -25.82 -0.11 0.59 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 4 O -0.29 -3.46 10.81 -20.17 -0.22 -3.67 16 5 C 0.15 1.81 7.03 -38.96 -0.27 1.54 16 6 C -0.18 -2.10 10.04 -39.24 -0.39 -2.49 16 7 C 0.14 1.57 7.28 -39.51 -0.29 1.28 16 8 F -0.13 -1.58 17.26 2.25 0.04 -1.55 16 9 C -0.18 -1.92 10.04 -39.45 -0.40 -2.31 16 10 C -0.03 -0.33 9.69 -39.73 -0.38 -0.72 16 11 C -0.17 -1.89 5.85 -104.08 -0.61 -2.50 16 12 C 0.10 0.98 3.30 -67.49 -0.22 0.76 16 13 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 14 N -0.67 -7.72 6.08 -106.49 -0.65 -8.36 16 15 C 0.03 0.34 5.25 -3.83 -0.02 0.32 16 16 C 0.12 1.82 3.30 -26.73 -0.09 1.73 16 17 H 0.11 2.20 6.79 -51.93 -0.35 1.84 16 18 O -0.54 -8.34 12.55 -35.23 -0.44 -8.78 16 19 C 0.03 0.45 4.66 -3.82 -0.02 0.43 16 20 N -0.53 -11.29 4.56 -244.37 -1.11 -12.40 16 21 C 0.04 0.72 9.37 60.07 0.56 1.28 16 22 C 0.19 5.04 4.55 -4.98 -0.02 5.01 16 23 C -0.50 -14.38 8.39 -34.44 -0.29 -14.67 16 24 H 0.06 1.80 7.17 -52.49 -0.38 1.43 16 25 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 26 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 27 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 28 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 29 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 30 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 31 H 0.08 0.45 7.97 -51.93 -0.41 0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.83 6.90 -51.93 -0.36 0.47 16 34 H 0.14 1.41 8.06 -52.49 -0.42 0.99 16 35 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.14 7.66 -52.49 -0.40 0.74 16 37 H 0.36 3.84 5.14 -39.29 -0.20 3.64 16 38 H 0.08 0.94 7.36 -51.93 -0.38 0.56 16 39 H 0.03 0.29 8.09 -51.93 -0.42 -0.13 16 40 H 0.36 3.99 9.05 45.56 0.41 4.40 16 41 H 0.03 0.56 8.00 -51.93 -0.42 0.14 16 42 H 0.06 0.81 7.94 -51.93 -0.41 0.40 16 43 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.08 1.63 6.66 -51.93 -0.35 1.28 16 45 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 46 H 0.03 0.89 6.63 -51.93 -0.34 0.55 16 47 H -0.01 -0.34 8.12 -51.94 -0.42 -0.76 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -33.13 390.54 -9.64 -42.77 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.52 Total: 4.67 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.34 Total: -9.16 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -1.02 Total: -47.15 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: -0.66 Total: -12.45 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.13 -9.64 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577502988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.912 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds