Wall clock time and date at job start Tue Mar 31 2020 22:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 110.80886 * 2 1 4 4 O 1.43771 * 110.74846 * 236.68191 * 2 1 3 5 5 C 1.36135 * 109.24225 * 213.92447 * 4 2 1 6 6 C 1.39250 * 129.86699 * 198.41789 * 5 4 2 7 7 C 1.38148 * 120.22085 * 181.01924 * 6 5 4 8 8 F 1.35102 * 119.85046 * 179.97438 * 7 6 5 9 9 C 1.38516 * 120.29911 * 359.95664 * 7 6 5 10 10 C 1.38314 * 119.74033 * 359.85119 * 9 7 6 11 11 C 1.37756 * 120.00791 * 0.02562 * 10 9 7 12 12 C 1.51654 * 132.13638 * 180.35813 * 11 10 9 13 13 H 1.09000 * 110.94090 * 46.42709 * 12 11 10 14 14 N 1.46895 * 110.93892 * 282.74279 * 12 11 10 15 15 C 1.46901 * 111.00317 * 86.45190 * 14 12 11 16 16 C 1.52995 * 109.47619 * 179.97438 * 15 14 12 17 17 H 1.09004 * 109.46845 * 59.99858 * 16 15 14 18 18 O 1.42904 * 109.47028 * 300.00415 * 16 15 14 19 19 C 1.53001 * 109.47427 * 180.02562 * 16 15 14 20 20 N 1.46897 * 109.47034 * 180.46390 * 19 16 15 21 21 C 1.46904 * 110.99825 * 199.85278 * 20 19 16 22 22 C 1.46900 * 111.00230 * 75.90012 * 20 19 16 23 23 C 1.50699 * 109.47109 * 190.00174 * 22 20 19 24 24 H 1.08001 * 120.00180 * 359.97438 * 23 22 20 25 25 C 1.37877 * 119.99575 * 180.02562 * 23 22 20 26 26 N 1.31514 * 120.00603 * 359.97438 * 25 23 22 27 27 Si 1.86809 * 119.99613 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47037 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47075 * 119.99650 * 27 25 23 30 30 H 1.48493 * 109.46763 * 239.99407 * 27 25 23 31 31 H 1.08999 * 109.47373 * 296.68931 * 1 2 3 32 32 H 1.09003 * 109.46756 * 56.68649 * 1 2 3 33 33 H 1.08994 * 109.47243 * 176.67977 * 1 2 3 34 34 H 1.07992 * 119.88593 * 0.97820 * 6 5 4 35 35 H 1.07996 * 120.13095 * 179.83605 * 9 7 6 36 36 H 1.07997 * 119.99613 * 179.97438 * 10 9 7 37 37 H 1.00907 * 111.00357 * 210.40962 * 14 12 11 38 38 H 1.08997 * 109.47153 * 300.00383 * 15 14 12 39 39 H 1.09002 * 109.46614 * 59.99897 * 15 14 12 40 40 H 0.96702 * 114.00170 * 299.99225 * 18 16 15 41 41 H 1.08999 * 109.46823 * 300.46548 * 19 16 15 42 42 H 1.09002 * 109.46805 * 60.46501 * 19 16 15 43 43 H 1.08996 * 109.47053 * 64.82185 * 21 20 19 44 44 H 1.08999 * 109.46953 * 184.82195 * 21 20 19 45 45 H 1.09000 * 109.47114 * 304.82356 * 21 20 19 46 46 H 1.09002 * 109.46859 * 309.99891 * 22 20 19 47 47 H 1.08989 * 109.47213 * 69.99562 * 22 20 19 48 48 H 0.96999 * 120.00185 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 8 2.0394 -0.7385 -1.1235 5 6 3.1956 -1.3608 -0.7643 6 6 4.2099 -1.8880 -1.5597 7 6 5.3011 -2.5035 -0.9776 8 9 6.2806 -3.0128 -1.7564 9 6 5.3958 -2.6005 0.4010 10 6 4.3934 -2.0752 1.1962 11 6 3.3060 -1.4590 0.6169 12 6 2.0778 -0.7951 1.2090 13 1 2.3519 -0.1247 2.0235 14 7 1.1056 -1.7987 1.6623 15 6 1.3982 -2.2328 3.0348 16 6 0.3666 -3.2751 3.4710 17 1 0.4119 -4.1336 2.8010 18 8 -0.9410 -2.7007 3.4216 19 6 0.6710 -3.7267 4.9008 20 7 -0.3130 -4.7355 5.3156 21 6 -0.3638 -4.8507 6.7792 22 6 -0.0274 -6.0359 4.6948 23 6 -1.1809 -6.9740 4.9407 24 1 -2.0400 -6.6380 5.5024 25 6 -1.1389 -8.2617 4.4495 26 7 -0.0926 -8.6710 3.7659 27 14 -2.5684 -9.4248 4.7549 28 1 -3.6146 -8.7267 5.5444 29 1 -3.1378 -9.8615 3.4547 30 1 -2.0890 -10.6110 5.5087 31 1 -0.3634 0.4616 0.9181 32 1 -0.3633 0.5644 -0.8588 33 1 -0.3633 -1.0259 -0.0595 34 1 4.1428 -1.8159 -2.6351 35 1 6.2488 -3.0846 0.8530 36 1 4.4627 -2.1490 2.2714 37 1 0.1623 -1.4483 1.5872 38 1 2.3957 -2.6705 3.0726 39 1 1.3525 -1.3743 3.7049 40 1 -1.0541 -1.9301 3.9948 41 1 1.6716 -4.1571 4.9406 42 1 0.6173 -2.8694 5.5718 43 1 -0.7280 -3.9158 7.2049 44 1 -1.0362 -5.6625 7.0566 45 1 0.6352 -5.0594 7.1622 46 1 0.1109 -5.9036 3.6217 47 1 0.8803 -6.4544 5.1292 48 1 -0.0633 -9.5768 3.4201 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577502988.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:56 Heat of formation + Delta-G solvation = -108.009306 kcal Electronic energy + Delta-G solvation = -29599.923313 eV Core-core repulsion = 25376.128593 eV Total energy + Delta-G solvation = -4223.794720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.01235 -42.37268 -39.53019 -38.39546 -37.47703 -36.22121 -34.60009 -32.86872 -31.82882 -31.40646 -30.34163 -29.25070 -27.43849 -26.42837 -25.08747 -24.01108 -22.86089 -22.68286 -22.06331 -21.56941 -19.08690 -18.62470 -18.29282 -17.72929 -17.40082 -17.07218 -17.02210 -16.61854 -16.56180 -16.35508 -15.86529 -15.83930 -15.61032 -15.28239 -14.97839 -14.79152 -14.66272 -14.04815 -14.00286 -13.90785 -13.76251 -13.38473 -13.27200 -13.15272 -12.90784 -12.82274 -12.71445 -12.56081 -12.54382 -12.27990 -12.26401 -12.14645 -11.92053 -11.74204 -11.49969 -11.29927 -10.74719 -10.61400 -9.96261 -9.47685 -9.23216 -8.93351 -8.20146 -6.29630 0.01243 0.19088 1.39536 1.41136 1.54352 2.02028 2.38733 2.40771 2.93610 3.12684 3.25001 3.32252 3.42813 3.53200 3.73191 3.76782 3.97869 4.00100 4.02830 4.11751 4.16193 4.20913 4.34335 4.40534 4.43616 4.51655 4.58277 4.65454 4.75082 4.79511 4.80764 4.85983 4.93769 5.02902 5.10019 5.12577 5.15263 5.24475 5.26224 5.30763 5.31840 5.54790 5.65268 5.93430 6.06034 6.08218 6.35984 6.41681 6.66701 6.87065 7.09411 7.39981 8.91185 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.002708 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.604490 B =10337.914254 C =11385.143100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.075 3.925 3 H 0.119 0.881 4 O -0.311 6.311 5 C 0.132 3.868 6 C -0.193 4.193 7 C 0.122 3.878 8 F -0.140 7.140 9 C -0.185 4.185 10 C -0.037 4.037 11 C -0.176 4.176 12 C 0.105 3.895 13 H 0.098 0.902 14 N -0.690 5.690 15 C 0.043 3.957 16 C 0.127 3.873 17 H 0.056 0.944 18 O -0.557 6.557 19 C 0.027 3.973 20 N -0.541 5.541 21 C 0.039 3.961 22 C 0.210 3.790 23 C -0.521 4.521 24 H 0.062 0.938 25 C -0.001 4.001 26 N -0.936 5.936 27 Si 0.968 3.032 28 H -0.262 1.262 29 H -0.280 1.280 30 H -0.277 1.277 31 H 0.104 0.896 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.145 0.855 35 H 0.158 0.842 36 H 0.153 0.847 37 H 0.361 0.639 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.380 0.620 41 H 0.026 0.974 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.053 0.947 45 H 0.012 0.988 46 H 0.000 1.000 47 H -0.042 1.042 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 23.640 -3.762 25.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.020 3.980 3 H 0.137 0.863 4 O -0.225 6.225 5 C 0.086 3.914 6 C -0.213 4.213 7 C 0.103 3.897 8 F -0.119 7.119 9 C -0.203 4.203 10 C -0.055 4.055 11 C -0.178 4.178 12 C -0.004 4.004 13 H 0.115 0.885 14 N -0.328 5.328 15 C -0.086 4.086 16 C 0.067 3.933 17 H 0.074 0.926 18 O -0.363 6.363 19 C -0.102 4.102 20 N -0.265 5.265 21 C -0.109 4.109 22 C 0.084 3.916 23 C -0.559 4.559 24 H 0.080 0.920 25 C -0.198 4.198 26 N -0.577 5.577 27 Si 0.793 3.207 28 H -0.186 1.186 29 H -0.206 1.206 30 H -0.202 1.202 31 H 0.122 0.878 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.176 0.824 36 H 0.171 0.829 37 H 0.187 0.813 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.228 0.772 41 H 0.045 0.955 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.072 0.928 45 H 0.030 0.970 46 H 0.018 0.982 47 H -0.025 1.025 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.825 22.651 -4.946 24.469 hybrid contribution 0.531 -0.577 0.757 1.090 sum 8.356 22.073 -4.189 23.971 Atomic orbital electron populations 1.21920 0.90920 1.03625 1.04893 1.23844 0.97084 0.95348 0.81731 0.86341 1.86849 1.33968 1.62559 1.39126 1.19213 0.86337 0.93097 0.92802 1.20125 0.93217 1.06560 1.01384 1.17280 0.86289 0.97184 0.88985 1.91498 1.60363 1.84908 1.75091 1.21278 1.02736 1.05199 0.91122 1.20415 0.90726 0.93224 1.01139 1.21012 0.97688 1.05534 0.93591 1.21672 0.89336 0.91618 0.97823 0.88454 1.60294 1.07065 1.41814 1.23626 1.22532 0.99225 0.97968 0.88906 1.21638 0.82610 0.94552 0.94517 0.92602 1.86664 1.31323 1.49663 1.68632 1.22787 0.93346 0.96451 0.97632 1.61934 1.48340 1.08055 1.08183 1.22250 0.99136 1.02134 0.87416 1.19352 0.93622 0.85641 0.92984 1.21514 1.03964 0.96487 1.33941 0.92003 1.25926 0.98908 1.00104 0.94900 1.70097 1.31185 1.18601 1.37785 0.85351 0.79054 0.78316 0.78010 1.18598 1.20616 1.20245 0.87766 0.90058 0.92011 0.83764 0.82444 0.82924 0.81321 0.90640 0.91471 0.77209 0.95544 0.88150 0.89826 0.92839 0.96991 0.98158 1.02477 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.08 8.36 71.98 0.60 -1.48 16 2 C 0.08 1.19 4.23 31.18 0.13 1.32 16 3 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 4 O -0.31 -7.32 10.81 -95.08 -1.03 -8.34 16 5 C 0.13 3.19 7.03 22.67 0.16 3.35 16 6 C -0.19 -4.59 10.04 22.49 0.23 -4.37 16 7 C 0.12 2.84 7.28 22.31 0.16 3.00 16 8 F -0.14 -3.36 17.26 44.97 0.78 -2.58 16 9 C -0.18 -3.77 10.04 22.35 0.22 -3.54 16 10 C -0.04 -0.72 9.69 22.17 0.21 -0.51 16 11 C -0.18 -3.79 5.85 -19.51 -0.11 -3.90 16 12 C 0.11 1.80 3.30 45.06 0.15 1.95 16 13 H 0.10 1.16 7.92 -2.39 -0.02 1.14 16 14 N -0.69 -14.88 6.08 -490.84 -2.98 -17.86 16 15 C 0.04 0.91 5.25 86.30 0.45 1.37 16 16 C 0.13 3.88 3.30 30.59 0.10 3.98 16 17 H 0.06 2.34 6.79 -2.38 -0.02 2.32 16 18 O -0.56 -16.42 12.55 -148.98 -1.87 -18.29 16 19 C 0.03 0.86 4.66 86.30 0.40 1.26 16 20 N -0.54 -22.87 4.56 -927.06 -4.22 -27.09 16 21 C 0.04 1.43 9.37 127.69 1.20 2.63 16 22 C 0.21 11.45 4.55 85.56 0.39 11.83 16 23 C -0.52 -30.34 8.39 25.60 0.21 -30.13 16 24 H 0.06 3.54 7.17 -2.91 -0.02 3.52 16 25 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 26 N -0.94 -58.02 13.29 21.45 0.28 -57.73 16 27 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 28 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 29 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 30 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 31 H 0.10 0.85 7.97 -2.39 -0.02 0.83 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 1.16 6.90 -2.39 -0.02 1.14 16 34 H 0.14 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.15 2.30 7.66 -2.91 -0.02 2.28 16 37 H 0.36 7.21 5.14 -89.69 -0.46 6.74 16 38 H 0.08 1.65 7.36 -2.39 -0.02 1.63 16 39 H 0.07 0.96 8.09 -2.39 -0.02 0.94 16 40 H 0.38 7.25 9.05 -74.06 -0.67 6.58 16 41 H 0.03 0.88 8.00 -2.39 -0.02 0.87 16 42 H 0.10 2.37 7.94 -2.39 -0.02 2.35 16 43 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 44 H 0.05 2.21 6.66 -2.39 -0.02 2.19 16 45 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 46 H 0.00 0.02 6.63 -2.39 -0.02 0.01 16 47 H -0.04 -2.50 8.12 -2.39 -0.02 -2.52 16 48 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -75.09 390.54 -2.19 -77.28 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.15 Total: 19.92 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: 4.97 Total: -12.82 kcal Atomic # 7 Polarization: -95.76 SS G_CDS: -6.92 Total: -102.69 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -2.90 Total: -26.64 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.09 -2.19 -77.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577502988.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.727 kcal (2) G-P(sol) polarization free energy of solvation -75.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds