Wall clock time and date at job start Tue Mar 31 2020 22:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.80721 * 2 1 4 4 O 1.43769 * 110.74899 * 236.69195 * 2 1 3 5 5 C 1.36146 * 109.23864 * 213.91980 * 4 2 1 6 6 C 1.39240 * 129.86333 * 198.36493 * 5 4 2 7 7 C 1.38149 * 120.22192 * 180.98348 * 6 5 4 8 8 F 1.35100 * 119.85289 * 180.02562 * 7 6 5 9 9 C 1.38512 * 120.29809 * 0.04055 * 7 6 5 10 10 C 1.38317 * 119.73758 * 359.81606 * 9 7 6 11 11 C 1.37755 * 120.01229 * 359.97438 * 10 9 7 12 12 C 1.51653 * 132.14096 * 180.35978 * 11 10 9 13 13 H 1.09004 * 110.93467 * 46.39516 * 12 11 10 14 14 N 1.46901 * 110.93929 * 282.75128 * 12 11 10 15 15 C 1.46899 * 111.00076 * 86.45132 * 14 12 11 16 16 C 1.52996 * 109.46798 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47555 * 304.99556 * 16 15 14 18 18 O 1.42901 * 109.47612 * 65.00079 * 16 15 14 19 19 C 1.53000 * 109.47000 * 185.00066 * 16 15 14 20 20 N 1.46905 * 109.47114 * 180.02562 * 19 16 15 21 21 C 1.46900 * 110.99850 * 293.94896 * 20 19 16 22 22 C 1.46906 * 111.00051 * 169.99929 * 20 19 16 23 23 C 1.50699 * 109.47140 * 189.99841 * 22 20 19 24 24 H 1.08003 * 119.99962 * 359.97438 * 23 22 20 25 25 C 1.37873 * 119.99861 * 180.02562 * 23 22 20 26 26 N 1.31522 * 120.00244 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99980 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47229 * 89.99965 * 27 25 23 29 29 H 1.48500 * 109.46876 * 209.99805 * 27 25 23 30 30 H 1.48499 * 109.47161 * 329.99530 * 27 25 23 31 31 H 1.09004 * 109.46726 * 296.67761 * 1 2 3 32 32 H 1.08991 * 109.47411 * 56.68462 * 1 2 3 33 33 H 1.09003 * 109.46766 * 176.68477 * 1 2 3 34 34 H 1.08000 * 119.89092 * 0.98393 * 6 5 4 35 35 H 1.08001 * 120.13259 * 179.78769 * 9 7 6 36 36 H 1.08003 * 119.99233 * 179.97438 * 10 9 7 37 37 H 1.00896 * 110.99720 * 322.49003 * 14 12 11 38 38 H 1.08995 * 109.47186 * 60.00137 * 15 14 12 39 39 H 1.08998 * 109.47052 * 299.99451 * 15 14 12 40 40 H 0.96697 * 113.99735 * 59.99435 * 18 16 15 41 41 H 1.08997 * 109.47704 * 60.00204 * 19 16 15 42 42 H 1.09000 * 109.47058 * 299.99530 * 19 16 15 43 43 H 1.08996 * 109.47030 * 296.04770 * 21 20 19 44 44 H 1.08999 * 109.46702 * 56.04909 * 21 20 19 45 45 H 1.08996 * 109.46890 * 176.04778 * 21 20 19 46 46 H 1.09004 * 109.47040 * 309.99779 * 22 20 19 47 47 H 1.09000 * 109.47033 * 69.99731 * 22 20 19 48 48 H 0.96992 * 120.00038 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9173 1.0190 0.0000 4 8 2.0394 -0.7383 -1.1236 5 6 3.1958 -1.3606 -0.7645 6 6 4.2095 -1.8884 -1.5599 7 6 5.3013 -2.5030 -0.9779 8 9 6.2809 -3.0121 -1.7567 9 6 5.3961 -2.6001 0.4006 10 6 4.3936 -2.0750 1.1959 11 6 3.3066 -1.4581 0.6167 12 6 2.0784 -0.7941 1.2089 13 1 2.3526 -0.1247 2.0243 14 7 1.1059 -1.7978 1.6615 15 6 1.3981 -2.2326 3.0339 16 6 0.3660 -3.2748 3.4692 17 1 -0.6370 -2.8659 3.3472 18 8 0.5038 -4.4471 2.6638 19 6 0.5942 -3.6357 4.9384 20 7 -0.3964 -4.6368 5.3563 21 6 -1.7528 -4.0732 5.3416 22 6 -0.0673 -5.1824 6.6800 23 6 -0.9514 -6.3683 6.9685 24 1 -1.6847 -6.6847 6.2414 25 6 -0.8249 -7.0485 8.1610 26 7 0.0678 -6.6629 9.0466 27 14 -1.9202 -8.5189 8.5183 28 1 -1.2624 -9.7569 8.0285 29 1 -2.1455 -8.6241 9.9824 30 1 -3.2235 -8.3445 7.8283 31 1 -0.3633 0.4614 0.9183 32 1 -0.3634 0.5644 -0.8587 33 1 -0.3633 -1.0260 -0.0594 34 1 4.1421 -1.8170 -2.6354 35 1 6.2492 -3.0842 0.8526 36 1 4.4631 -2.1487 2.2711 37 1 1.0785 -2.5848 1.0308 38 1 1.3525 -1.3745 3.7044 39 1 2.3954 -2.6707 3.0716 40 1 1.3738 -4.8650 2.7231 41 1 0.4891 -2.7416 5.5529 42 1 1.5972 -4.0446 5.0606 43 1 -1.8212 -3.2715 6.0769 44 1 -1.9706 -3.6764 4.3501 45 1 -2.4732 -4.8536 5.5869 46 1 0.9767 -5.4954 6.6947 47 1 -0.2277 -4.4165 7.4388 48 1 0.1565 -7.1412 9.8857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577503090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:05 Heat of formation + Delta-G solvation = -88.726591 kcal Electronic energy + Delta-G solvation = -29344.122464 eV Core-core repulsion = 25121.163905 eV Total energy + Delta-G solvation = -4222.958559 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.29858 -41.75700 -38.33455 -37.71585 -36.11167 -35.11063 -32.54898 -32.11184 -31.02967 -30.63846 -29.19600 -27.14697 -26.50265 -25.38285 -23.57164 -23.21963 -22.11410 -21.56453 -21.20757 -20.17370 -18.35784 -17.67104 -16.89936 -16.63806 -16.42035 -16.23381 -15.99329 -15.88829 -15.25560 -14.97824 -14.85935 -14.48881 -14.47908 -14.26207 -13.90438 -13.71535 -13.46547 -13.27855 -13.18543 -12.58429 -12.56063 -12.37495 -12.19461 -12.08819 -11.90614 -11.53272 -11.40897 -11.35258 -11.15827 -11.05132 -10.91281 -10.77982 -10.64970 -10.31884 -10.02573 -9.65506 -9.38015 -9.14759 -8.87572 -8.52903 -8.44198 -7.21464 -6.03832 -4.04741 0.63981 0.82282 2.67384 3.06569 3.32231 3.37942 3.42070 3.66342 3.90382 4.00826 4.24910 4.39375 4.42135 4.58084 4.61266 4.64513 4.76334 4.85286 4.92090 5.05902 5.09584 5.13046 5.25632 5.33188 5.45389 5.48611 5.52874 5.57774 5.60197 5.68783 5.70054 5.75902 5.90989 6.02436 6.05906 6.17526 6.19377 6.29193 6.38085 6.61961 6.71731 6.76973 7.05530 7.24946 7.30993 7.79046 7.92529 8.08488 8.18867 8.54159 9.03433 9.59654 11.07194 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.002234 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.886456 B =12530.510747 C =13638.444662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.084 3.916 3 H 0.091 0.909 4 O -0.296 6.296 5 C 0.149 3.851 6 C -0.183 4.183 7 C 0.140 3.860 8 F -0.133 7.133 9 C -0.185 4.185 10 C -0.030 4.030 11 C -0.224 4.224 12 C 0.104 3.896 13 H 0.105 0.895 14 N -0.660 5.660 15 C 0.025 3.975 16 C 0.114 3.886 17 H 0.104 0.896 18 O -0.545 6.545 19 C 0.025 3.975 20 N -0.529 5.529 21 C 0.037 3.963 22 C 0.193 3.807 23 C -0.505 4.505 24 H 0.064 0.936 25 C 0.054 3.946 26 N -0.901 5.901 27 Si 0.899 3.101 28 H -0.280 1.280 29 H -0.288 1.288 30 H -0.273 1.273 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.134 0.866 37 H 0.355 0.645 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.367 0.633 41 H 0.029 0.971 42 H 0.068 0.932 43 H 0.009 0.991 44 H 0.047 0.953 45 H 0.073 0.927 46 H 0.027 0.973 47 H -0.011 1.011 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.687 16.025 -19.112 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.028 3.972 3 H 0.109 0.891 4 O -0.209 6.209 5 C 0.102 3.898 6 C -0.202 4.202 7 C 0.121 3.879 8 F -0.112 7.112 9 C -0.204 4.204 10 C -0.049 4.049 11 C -0.226 4.226 12 C -0.007 4.007 13 H 0.123 0.877 14 N -0.290 5.290 15 C -0.104 4.104 16 C 0.054 3.946 17 H 0.122 0.878 18 O -0.349 6.349 19 C -0.105 4.105 20 N -0.253 5.253 21 C -0.111 4.111 22 C 0.068 3.932 23 C -0.543 4.543 24 H 0.082 0.918 25 C -0.147 4.147 26 N -0.541 5.541 27 Si 0.726 3.274 28 H -0.206 1.206 29 H -0.214 1.214 30 H -0.198 1.198 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.175 0.825 38 H 0.099 0.901 39 H 0.054 0.946 40 H 0.214 0.786 41 H 0.047 0.953 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.007 0.993 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.541 16.184 -19.438 26.394 hybrid contribution 1.223 -0.842 1.011 1.796 sum 8.764 15.342 -18.427 25.529 Atomic orbital electron populations 1.21624 0.90596 1.04327 1.02305 1.23555 0.97186 0.94354 0.82109 0.89131 1.86915 1.33513 1.62089 1.38413 1.19083 0.86466 0.92141 0.92123 1.20014 0.92928 1.06260 1.01006 1.17146 0.86056 0.96270 0.88454 1.91529 1.60150 1.84655 1.74837 1.21053 1.02075 1.05728 0.91499 1.20191 0.90786 0.93790 1.00142 1.21647 0.99209 1.07169 0.94623 1.21781 0.86530 0.94595 0.97783 0.87656 1.60668 1.46886 1.17474 1.03976 1.22779 0.98060 0.99589 0.90016 1.21979 0.99083 0.83993 0.89548 0.87829 1.86607 1.38322 1.42167 1.67784 1.22687 0.97837 0.95126 0.94805 1.62027 1.00518 1.30975 1.31797 1.22239 0.92307 0.98314 0.98248 1.19746 0.97094 0.94203 0.82168 1.21168 1.19130 1.12448 1.01592 0.91792 1.24996 0.95799 0.97771 0.96139 1.69958 1.34747 1.40931 1.08446 0.86487 0.80893 0.82818 0.77159 1.20610 1.21354 1.19825 0.89985 0.92419 0.90314 0.84166 0.84079 0.84786 0.82535 0.90099 0.94601 0.78645 0.95328 0.91394 0.97260 0.93400 0.90851 0.95462 0.99312 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.98 9.01 37.16 0.33 -0.64 16 2 C 0.08 0.66 4.22 -25.84 -0.11 0.55 16 3 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 4 O -0.30 -3.00 10.81 -20.21 -0.22 -3.22 16 5 C 0.15 1.48 7.03 -38.96 -0.27 1.21 16 6 C -0.18 -1.75 10.04 -39.24 -0.39 -2.14 16 7 C 0.14 1.34 7.28 -39.51 -0.29 1.05 16 8 F -0.13 -1.34 17.26 2.25 0.04 -1.30 16 9 C -0.18 -1.56 10.04 -39.45 -0.40 -1.96 16 10 C -0.03 -0.25 9.69 -39.73 -0.38 -0.64 16 11 C -0.22 -2.00 5.61 -104.08 -0.58 -2.59 16 12 C 0.10 0.84 3.26 -67.51 -0.22 0.62 16 13 H 0.11 0.75 7.91 -51.93 -0.41 0.33 16 14 N -0.66 -6.12 4.74 -106.51 -0.51 -6.62 16 15 C 0.03 0.25 5.21 -3.83 -0.02 0.23 16 16 C 0.11 1.50 3.08 -26.73 -0.08 1.42 16 17 H 0.10 1.48 6.47 -51.93 -0.34 1.14 16 18 O -0.55 -7.93 12.72 -35.23 -0.45 -8.38 16 19 C 0.03 0.42 4.62 -3.82 -0.02 0.40 16 20 N -0.53 -11.21 4.62 -244.36 -1.13 -12.33 16 21 C 0.04 0.73 9.16 60.06 0.55 1.28 16 22 C 0.19 4.99 4.72 -4.97 -0.02 4.97 16 23 C -0.50 -14.23 8.52 -34.44 -0.29 -14.52 16 24 H 0.06 1.80 7.10 -52.48 -0.37 1.43 16 25 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 26 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 27 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.71 7.44 -51.93 -0.39 0.32 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.13 0.91 7.66 -52.48 -0.40 0.51 16 37 H 0.35 3.79 8.07 -39.29 -0.32 3.47 16 38 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 39 H 0.04 0.34 7.36 -51.93 -0.38 -0.05 16 40 H 0.37 4.45 9.04 45.56 0.41 4.87 16 41 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.07 1.10 7.93 -51.93 -0.41 0.69 16 43 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.05 0.81 6.30 -51.93 -0.33 0.48 16 45 H 0.07 1.55 6.86 -51.93 -0.36 1.20 16 46 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 47 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 48 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -31.20 392.66 -9.56 -40.77 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.64 Total: 3.78 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.30 Total: -9.32 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: -0.90 Total: -44.95 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: -0.67 Total: -11.60 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.20 -9.56 -40.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577503090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.957 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds