Wall clock time and date at job start Tue Mar 31 2020 22:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 110.80721 * 2 1 4 4 O 1.43769 * 110.74899 * 236.69195 * 2 1 3 5 5 C 1.36146 * 109.23864 * 213.91980 * 4 2 1 6 6 C 1.39240 * 129.86333 * 198.36493 * 5 4 2 7 7 C 1.38149 * 120.22192 * 180.98348 * 6 5 4 8 8 F 1.35100 * 119.85289 * 180.02562 * 7 6 5 9 9 C 1.38512 * 120.29809 * 0.04055 * 7 6 5 10 10 C 1.38317 * 119.73758 * 359.81606 * 9 7 6 11 11 C 1.37755 * 120.01229 * 359.97438 * 10 9 7 12 12 C 1.51653 * 132.14096 * 180.35978 * 11 10 9 13 13 H 1.09004 * 110.93467 * 46.39516 * 12 11 10 14 14 N 1.46901 * 110.93929 * 282.75128 * 12 11 10 15 15 C 1.46899 * 111.00076 * 86.45132 * 14 12 11 16 16 C 1.52996 * 109.46798 * 179.97438 * 15 14 12 17 17 H 1.09000 * 109.47555 * 304.99556 * 16 15 14 18 18 O 1.42901 * 109.47612 * 65.00079 * 16 15 14 19 19 C 1.53000 * 109.47000 * 185.00066 * 16 15 14 20 20 N 1.46905 * 109.47114 * 180.02562 * 19 16 15 21 21 C 1.46900 * 110.99850 * 293.94896 * 20 19 16 22 22 C 1.46906 * 111.00051 * 169.99929 * 20 19 16 23 23 C 1.50699 * 109.47140 * 189.99841 * 22 20 19 24 24 H 1.08003 * 119.99962 * 359.97438 * 23 22 20 25 25 C 1.37873 * 119.99861 * 180.02562 * 23 22 20 26 26 N 1.31522 * 120.00244 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99980 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47229 * 89.99965 * 27 25 23 29 29 H 1.48500 * 109.46876 * 209.99805 * 27 25 23 30 30 H 1.48499 * 109.47161 * 329.99530 * 27 25 23 31 31 H 1.09004 * 109.46726 * 296.67761 * 1 2 3 32 32 H 1.08991 * 109.47411 * 56.68462 * 1 2 3 33 33 H 1.09003 * 109.46766 * 176.68477 * 1 2 3 34 34 H 1.08000 * 119.89092 * 0.98393 * 6 5 4 35 35 H 1.08001 * 120.13259 * 179.78769 * 9 7 6 36 36 H 1.08003 * 119.99233 * 179.97438 * 10 9 7 37 37 H 1.00896 * 110.99720 * 322.49003 * 14 12 11 38 38 H 1.08995 * 109.47186 * 60.00137 * 15 14 12 39 39 H 1.08998 * 109.47052 * 299.99451 * 15 14 12 40 40 H 0.96697 * 113.99735 * 59.99435 * 18 16 15 41 41 H 1.08997 * 109.47704 * 60.00204 * 19 16 15 42 42 H 1.09000 * 109.47058 * 299.99530 * 19 16 15 43 43 H 1.08996 * 109.47030 * 296.04770 * 21 20 19 44 44 H 1.08999 * 109.46702 * 56.04909 * 21 20 19 45 45 H 1.08996 * 109.46890 * 176.04778 * 21 20 19 46 46 H 1.09004 * 109.47040 * 309.99779 * 22 20 19 47 47 H 1.09000 * 109.47033 * 69.99731 * 22 20 19 48 48 H 0.96992 * 120.00038 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9173 1.0190 0.0000 4 8 2.0394 -0.7383 -1.1236 5 6 3.1958 -1.3606 -0.7645 6 6 4.2095 -1.8884 -1.5599 7 6 5.3013 -2.5030 -0.9779 8 9 6.2809 -3.0121 -1.7567 9 6 5.3961 -2.6001 0.4006 10 6 4.3936 -2.0750 1.1959 11 6 3.3066 -1.4581 0.6167 12 6 2.0784 -0.7941 1.2089 13 1 2.3526 -0.1247 2.0243 14 7 1.1059 -1.7978 1.6615 15 6 1.3981 -2.2326 3.0339 16 6 0.3660 -3.2748 3.4692 17 1 -0.6370 -2.8659 3.3472 18 8 0.5038 -4.4471 2.6638 19 6 0.5942 -3.6357 4.9384 20 7 -0.3964 -4.6368 5.3563 21 6 -1.7528 -4.0732 5.3416 22 6 -0.0673 -5.1824 6.6800 23 6 -0.9514 -6.3683 6.9685 24 1 -1.6847 -6.6847 6.2414 25 6 -0.8249 -7.0485 8.1610 26 7 0.0678 -6.6629 9.0466 27 14 -1.9202 -8.5189 8.5183 28 1 -1.2624 -9.7569 8.0285 29 1 -2.1455 -8.6241 9.9824 30 1 -3.2235 -8.3445 7.8283 31 1 -0.3633 0.4614 0.9183 32 1 -0.3634 0.5644 -0.8587 33 1 -0.3633 -1.0260 -0.0594 34 1 4.1421 -1.8170 -2.6354 35 1 6.2492 -3.0842 0.8526 36 1 4.4631 -2.1487 2.2711 37 1 1.0785 -2.5848 1.0308 38 1 1.3525 -1.3745 3.7044 39 1 2.3954 -2.6707 3.0716 40 1 1.3738 -4.8650 2.7231 41 1 0.4891 -2.7416 5.5529 42 1 1.5972 -4.0446 5.0606 43 1 -1.8212 -3.2715 6.0769 44 1 -1.9706 -3.6764 4.3501 45 1 -2.4732 -4.8536 5.5869 46 1 0.9767 -5.4954 6.6947 47 1 -0.2277 -4.4165 7.4388 48 1 0.1565 -7.1412 9.8857 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577503090.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:04 Heat of formation + Delta-G solvation = -111.288195 kcal Electronic energy + Delta-G solvation = -29345.100808 eV Core-core repulsion = 25121.163905 eV Total energy + Delta-G solvation = -4223.936903 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.03812 -42.42330 -39.53697 -38.38268 -37.42718 -36.15117 -34.61049 -32.88218 -31.71162 -31.41012 -30.39932 -28.94357 -27.55831 -26.57397 -24.92818 -24.00052 -22.78107 -22.64369 -22.18507 -21.62783 -19.05380 -18.59174 -18.33197 -17.60375 -17.32702 -17.16086 -17.05523 -16.71395 -16.67430 -16.23606 -15.86974 -15.63657 -15.53415 -15.28408 -14.96099 -14.80595 -14.66567 -14.19054 -13.96432 -13.87163 -13.71463 -13.30089 -13.19334 -13.18755 -12.89329 -12.77073 -12.73142 -12.54342 -12.51924 -12.36816 -12.17154 -12.02435 -12.00186 -11.70908 -11.58091 -11.38643 -10.70411 -10.61414 -10.07156 -9.57659 -9.22963 -8.93682 -8.20818 -6.30286 -0.04859 0.14906 1.41071 1.42259 1.53399 2.02610 2.37543 2.40666 2.87036 3.11753 3.25004 3.28892 3.42538 3.61798 3.73741 3.75671 3.97946 3.98398 4.04597 4.11641 4.23250 4.26153 4.32045 4.43164 4.49357 4.53710 4.59780 4.72092 4.75682 4.83037 4.85778 4.93049 4.98060 5.08048 5.08274 5.10364 5.17723 5.19231 5.24797 5.34157 5.45667 5.55401 5.65294 5.88874 6.05332 6.06182 6.25168 6.33868 6.65705 6.86064 6.96168 7.39543 8.90049 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015924 B = 0.002234 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.886456 B =12530.510747 C =13638.444662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.081 3.919 3 H 0.109 0.891 4 O -0.312 6.312 5 C 0.134 3.866 6 C -0.192 4.192 7 C 0.127 3.873 8 F -0.140 7.140 9 C -0.184 4.184 10 C -0.031 4.031 11 C -0.223 4.223 12 C 0.108 3.892 13 H 0.123 0.877 14 N -0.658 5.658 15 C 0.037 3.963 16 C 0.127 3.873 17 H 0.097 0.903 18 O -0.562 6.562 19 C 0.025 3.975 20 N -0.540 5.540 21 C 0.042 3.958 22 C 0.208 3.792 23 C -0.523 4.523 24 H 0.060 0.940 25 C 0.002 3.998 26 N -0.934 5.934 27 Si 0.967 3.033 28 H -0.273 1.273 29 H -0.281 1.281 30 H -0.266 1.266 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.144 0.856 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.347 0.653 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.377 0.623 41 H 0.035 0.965 42 H 0.067 0.933 43 H 0.010 0.990 44 H 0.077 0.923 45 H 0.051 0.949 46 H 0.004 0.996 47 H -0.039 1.039 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.540 16.592 -19.381 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.025 3.975 3 H 0.127 0.873 4 O -0.227 6.227 5 C 0.087 3.913 6 C -0.212 4.212 7 C 0.108 3.892 8 F -0.118 7.118 9 C -0.202 4.202 10 C -0.050 4.050 11 C -0.226 4.226 12 C -0.003 4.003 13 H 0.141 0.859 14 N -0.288 5.288 15 C -0.093 4.093 16 C 0.068 3.932 17 H 0.114 0.886 18 O -0.368 6.368 19 C -0.104 4.104 20 N -0.264 5.264 21 C -0.106 4.106 22 C 0.082 3.918 23 C -0.561 4.561 24 H 0.078 0.922 25 C -0.196 4.196 26 N -0.575 5.575 27 Si 0.792 3.208 28 H -0.199 1.199 29 H -0.207 1.207 30 H -0.190 1.190 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.175 0.825 36 H 0.170 0.830 37 H 0.166 0.834 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.225 0.775 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.029 0.971 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.023 0.977 47 H -0.021 1.021 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.399 16.770 -19.728 26.929 hybrid contribution 1.294 -0.972 1.050 1.929 sum 8.693 15.798 -18.679 25.963 Atomic orbital electron populations 1.21589 0.90400 1.03367 1.03035 1.23754 0.97351 0.94975 0.81390 0.87300 1.86893 1.33707 1.62505 1.39567 1.19229 0.86606 0.92721 0.92756 1.20146 0.93152 1.06427 1.01447 1.17308 0.86094 0.96860 0.88980 1.91509 1.60393 1.84836 1.75106 1.21294 1.02631 1.05256 0.91069 1.20419 0.90326 0.93202 1.01043 1.21797 0.99591 1.06994 0.94258 1.21840 0.85799 0.94303 0.98322 0.85950 1.60647 1.47454 1.17285 1.03387 1.22596 0.97165 0.98944 0.90558 1.21811 0.99899 0.84481 0.87050 0.88552 1.86576 1.39414 1.42916 1.67844 1.22811 0.96478 0.94068 0.97084 1.61925 1.02305 1.33487 1.28683 1.22201 0.90950 0.97528 0.99956 1.19390 0.95318 0.93139 0.83967 1.21474 1.19436 1.13373 1.01811 0.92230 1.25883 0.97143 1.00682 0.95893 1.70072 1.36202 1.42313 1.08929 0.85417 0.79138 0.79082 0.77200 1.19892 1.20661 1.19020 0.89077 0.91875 0.92032 0.83806 0.82502 0.82976 0.83433 0.88817 0.93603 0.77492 0.94676 0.91404 0.97118 0.90454 0.92998 0.97742 1.02096 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.01 71.98 0.65 -1.03 16 2 C 0.08 1.12 4.22 31.17 0.13 1.26 16 3 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 4 O -0.31 -6.06 10.81 -95.22 -1.03 -7.09 16 5 C 0.13 2.54 7.03 22.67 0.16 2.70 16 6 C -0.19 -3.61 10.04 22.49 0.23 -3.39 16 7 C 0.13 2.34 7.28 22.31 0.16 2.50 16 8 F -0.14 -2.77 17.26 44.97 0.78 -1.99 16 9 C -0.18 -2.83 10.04 22.35 0.22 -2.60 16 10 C -0.03 -0.45 9.69 22.17 0.21 -0.24 16 11 C -0.22 -3.58 5.61 -19.51 -0.11 -3.69 16 12 C 0.11 1.48 3.26 45.05 0.15 1.63 16 13 H 0.12 1.30 7.91 -2.39 -0.02 1.28 16 14 N -0.66 -10.76 4.74 -490.89 -2.33 -13.08 16 15 C 0.04 0.63 5.21 86.30 0.45 1.08 16 16 C 0.13 3.13 3.08 30.59 0.09 3.22 16 17 H 0.10 2.54 6.47 -2.39 -0.02 2.52 16 18 O -0.56 -15.54 12.72 -148.98 -1.90 -17.43 16 19 C 0.02 0.79 4.62 86.30 0.40 1.19 16 20 N -0.54 -22.80 4.62 -927.03 -4.28 -27.08 16 21 C 0.04 1.62 9.16 127.69 1.17 2.79 16 22 C 0.21 11.00 4.72 85.56 0.40 11.40 16 23 C -0.52 -29.82 8.52 25.60 0.22 -29.60 16 24 H 0.06 3.38 7.10 -2.91 -0.02 3.36 16 25 C 0.00 0.11 5.46 84.65 0.46 0.57 16 26 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 27 Si 0.97 44.49 29.54 68.60 2.03 46.52 16 28 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 29 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 30 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 31 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 1.04 7.44 -2.39 -0.02 1.02 16 34 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 36 H 0.15 1.61 7.66 -2.91 -0.02 1.58 16 37 H 0.35 6.85 8.07 -89.70 -0.72 6.13 16 38 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 39 H 0.05 0.71 7.36 -2.39 -0.02 0.70 16 40 H 0.38 8.62 9.04 -74.06 -0.67 7.95 16 41 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 42 H 0.07 2.14 7.93 -2.39 -0.02 2.12 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.08 2.50 6.30 -2.39 -0.02 2.49 16 45 H 0.05 2.20 6.86 -2.39 -0.02 2.18 16 46 H 0.00 0.25 7.93 -2.38 -0.02 0.23 16 47 H -0.04 -2.21 8.12 -2.39 -0.02 -2.23 16 48 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -67.39 392.66 -1.85 -69.25 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -0.41 Total: 18.88 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.00 Total: -12.22 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -6.33 Total: -95.91 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -2.92 Total: -24.52 kcal Atomic # 9 Polarization: -2.77 SS G_CDS: 0.78 Total: -1.99 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -67.39 -1.85 -69.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577503090.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.040 kcal (2) G-P(sol) polarization free energy of solvation -67.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds