Wall clock time and date at job start Tue Mar 31 2020 22:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.80524 * 2 1 4 4 O 1.43761 * 110.74624 * 236.69379 * 2 1 3 5 5 C 1.36141 * 109.28563 * 269.22790 * 4 2 1 6 6 C 1.39248 * 129.85438 * 161.42732 * 5 4 2 7 7 C 1.38143 * 120.22635 * 179.58895 * 6 5 4 8 8 F 1.35094 * 119.85397 * 180.02562 * 7 6 5 9 9 C 1.38521 * 120.29654 * 0.02562 * 7 6 5 10 10 C 1.38311 * 119.73814 * 0.16808 * 9 7 6 11 11 C 1.37763 * 120.01125 * 0.02562 * 10 9 7 12 12 C 1.51653 * 132.14565 * 179.59947 * 11 10 9 13 13 H 1.09002 * 110.97057 * 313.89968 * 12 11 10 14 14 N 1.46898 * 110.94371 * 77.57804 * 12 11 10 15 15 C 1.46900 * 111.00081 * 267.51820 * 14 12 11 16 16 C 1.53000 * 109.47400 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.46730 * 59.99960 * 16 15 14 18 18 O 1.42901 * 109.47092 * 300.00238 * 16 15 14 19 19 C 1.52994 * 109.47231 * 180.02562 * 16 15 14 20 20 N 1.46900 * 109.46992 * 185.00142 * 19 16 15 21 21 C 1.46897 * 111.00122 * 66.04438 * 20 19 16 22 22 C 1.46907 * 111.00174 * 189.99637 * 20 19 16 23 23 C 1.50695 * 109.47119 * 169.99800 * 22 20 19 24 24 H 1.07995 * 120.00496 * 0.02562 * 23 22 20 25 25 C 1.37880 * 119.99572 * 180.02562 * 23 22 20 26 26 N 1.31511 * 120.00327 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99951 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 59.99744 * 27 25 23 29 29 H 1.48503 * 109.47261 * 299.99924 * 27 25 23 30 30 H 1.48500 * 109.47454 * 179.97438 * 27 25 23 31 31 H 1.09006 * 109.46720 * 296.68635 * 1 2 3 32 32 H 1.08994 * 109.47476 * 56.68889 * 1 2 3 33 33 H 1.08997 * 109.46826 * 176.69217 * 1 2 3 34 34 H 1.08004 * 119.88379 * 359.61814 * 6 5 4 35 35 H 1.08002 * 120.13219 * 180.15622 * 9 7 6 36 36 H 1.07995 * 119.99674 * 179.97438 * 10 9 7 37 37 H 1.00895 * 111.00165 * 143.56516 * 14 12 11 38 38 H 1.09008 * 109.46735 * 59.99959 * 15 14 12 39 39 H 1.09002 * 109.47294 * 300.00405 * 15 14 12 40 40 H 0.96702 * 113.99949 * 299.99947 * 18 16 15 41 41 H 1.09002 * 109.47902 * 64.99836 * 19 16 15 42 42 H 1.09004 * 109.47251 * 304.99796 * 19 16 15 43 43 H 1.09003 * 109.47400 * 183.95158 * 21 20 19 44 44 H 1.08998 * 109.46894 * 303.95011 * 21 20 19 45 45 H 1.09004 * 109.47284 * 63.95403 * 21 20 19 46 46 H 1.09002 * 109.46929 * 49.99750 * 22 20 19 47 47 H 1.08998 * 109.47035 * 290.00562 * 22 20 19 48 48 H 0.97006 * 119.99995 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 8 2.0392 -0.7382 -1.1236 5 6 2.2147 -2.0396 -0.7643 6 6 2.3459 -3.1750 -1.5597 7 6 2.5265 -4.4148 -0.9777 8 9 2.6534 -5.5112 -1.7565 9 6 2.5779 -4.5387 0.4010 10 6 2.4441 -3.4150 1.1963 11 6 2.2601 -2.1788 0.6170 12 6 2.0775 -0.7945 1.2090 13 1 1.3547 -0.8113 2.0247 14 7 3.3620 -0.2430 1.6605 15 6 3.5983 -0.5508 3.0773 16 6 4.9420 0.0391 3.5102 17 1 4.9259 1.1200 3.3710 18 8 5.9881 -0.5276 2.7187 19 6 5.1884 -0.2821 4.9856 20 7 6.4187 0.3843 5.4330 21 6 6.2628 1.8449 5.4145 22 6 6.8170 -0.0858 6.7666 23 6 8.1974 0.4262 7.0880 24 1 8.7258 1.0397 6.3735 25 6 8.7858 0.1112 8.2946 26 7 8.1426 -0.6364 9.1646 27 14 10.4966 0.7464 8.6934 28 1 10.4903 2.2313 8.6741 29 1 11.4601 0.2423 7.6821 30 1 10.8993 0.2711 10.0415 31 1 -0.3633 0.4616 0.9183 32 1 -0.3634 0.5643 -0.8588 33 1 -0.3633 -1.0259 -0.0593 34 1 2.3069 -3.0859 -2.6354 35 1 2.7216 -5.5089 0.8532 36 1 2.4831 -3.5069 2.2716 37 1 3.4071 0.7512 1.4941 38 1 3.6138 -1.6319 3.2165 39 1 2.8005 -0.1182 3.6811 40 1 6.0612 -1.4890 2.7934 41 1 5.2930 -1.3599 5.1104 42 1 4.3463 0.0724 5.5802 43 1 7.2091 2.3147 5.6825 44 1 5.9677 2.1661 4.4157 45 1 5.4959 2.1375 6.1318 46 1 6.8211 -1.1757 6.7814 47 1 6.1100 0.2849 7.5087 48 1 7.2540 -0.9659 8.9576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577503091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:09 Heat of formation + Delta-G solvation = -89.972726 kcal Electronic energy + Delta-G solvation = -29218.559953 eV Core-core repulsion = 24995.547358 eV Total energy + Delta-G solvation = -4223.012595 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.22766 -41.75652 -38.37097 -37.67590 -36.21097 -35.15564 -32.76587 -32.37374 -30.88501 -30.58304 -29.40085 -26.94228 -26.67539 -25.04241 -23.47583 -23.33407 -22.29281 -21.67403 -21.33312 -20.41615 -18.27085 -17.46876 -16.90831 -16.81992 -16.61378 -16.28014 -15.93079 -15.77371 -15.37350 -15.10379 -14.98845 -14.62770 -14.40620 -14.10003 -14.00153 -13.69085 -13.60522 -13.40629 -13.16823 -12.87360 -12.81390 -12.41825 -12.38100 -12.13962 -11.82322 -11.61304 -11.39752 -11.38373 -11.33173 -11.17401 -10.99514 -10.74155 -10.66620 -10.30361 -10.07931 -9.67592 -9.22508 -8.81970 -8.66728 -8.52463 -8.38714 -7.33512 -6.38141 -4.06655 0.74756 0.90789 2.67558 3.10079 3.44661 3.47449 3.61395 3.65717 3.88424 4.00509 4.16835 4.38674 4.46701 4.54490 4.60941 4.62399 4.67457 4.70479 4.73508 4.93640 5.00080 5.10964 5.15390 5.22821 5.30424 5.37687 5.40179 5.46565 5.53373 5.55364 5.61609 5.71984 5.83271 5.88822 6.00910 6.03410 6.16093 6.19467 6.26630 6.54719 6.63936 6.73065 6.93618 6.97343 7.04837 7.74382 7.92734 8.04342 8.30111 8.57970 8.85730 9.63782 11.00981 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.002144 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.293350 B =13054.115744 C =14018.555242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.077 3.923 3 H 0.120 0.880 4 O -0.288 6.288 5 C 0.149 3.851 6 C -0.182 4.182 7 C 0.136 3.864 8 F -0.135 7.135 9 C -0.183 4.183 10 C -0.032 4.032 11 C -0.163 4.163 12 C 0.101 3.899 13 H 0.075 0.925 14 N -0.662 5.662 15 C 0.027 3.973 16 C 0.117 3.883 17 H 0.094 0.906 18 O -0.534 6.534 19 C 0.024 3.976 20 N -0.523 5.523 21 C 0.038 3.962 22 C 0.183 3.817 23 C -0.586 4.586 24 H 0.058 0.942 25 C 0.013 3.987 26 N -0.915 5.915 27 Si 1.073 2.927 28 H -0.288 1.288 29 H -0.286 1.286 30 H -0.283 1.283 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.347 0.653 38 H 0.076 0.924 39 H 0.039 0.961 40 H 0.369 0.631 41 H 0.070 0.930 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.008 0.992 46 H 0.018 0.982 47 H -0.022 1.022 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.430 -2.345 -19.530 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.021 3.979 3 H 0.137 0.863 4 O -0.202 6.202 5 C 0.103 3.897 6 C -0.201 4.201 7 C 0.117 3.883 8 F -0.113 7.113 9 C -0.202 4.202 10 C -0.051 4.051 11 C -0.165 4.165 12 C -0.009 4.009 13 H 0.093 0.907 14 N -0.294 5.294 15 C -0.103 4.103 16 C 0.057 3.943 17 H 0.111 0.889 18 O -0.337 6.337 19 C -0.106 4.106 20 N -0.246 5.246 21 C -0.111 4.111 22 C 0.058 3.942 23 C -0.625 4.625 24 H 0.076 0.924 25 C -0.190 4.190 26 N -0.552 5.552 27 Si 0.901 3.099 28 H -0.215 1.215 29 H -0.213 1.213 30 H -0.209 1.209 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.150 0.850 37 H 0.167 0.833 38 H 0.095 0.905 39 H 0.057 0.943 40 H 0.215 0.785 41 H 0.088 0.912 42 H 0.044 0.956 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.027 0.973 46 H 0.036 0.964 47 H -0.004 1.004 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.359 -2.273 -19.309 26.064 hybrid contribution -2.638 0.004 0.069 2.639 sum -19.998 -2.269 -19.240 27.843 Atomic orbital electron populations 1.22234 0.93424 1.03606 1.03541 1.23622 0.94736 0.96470 0.83119 0.86254 1.86903 1.79539 1.16228 1.37483 1.19033 0.93860 0.84741 0.92096 1.19977 1.10549 0.88710 1.00885 1.17108 1.00549 0.82255 0.88436 1.91519 1.93179 1.51749 1.74858 1.21010 1.07315 1.00382 0.91471 1.20115 0.95065 0.89828 1.00073 1.20645 1.07310 0.94989 0.93589 1.21694 0.91457 0.90905 0.96822 0.90704 1.60275 1.30421 1.19521 1.19215 1.22825 0.98275 1.01834 0.87380 1.21862 0.84782 0.98148 0.89516 0.88861 1.86608 1.53625 1.25377 1.68095 1.22749 0.92893 1.00017 0.94964 1.61938 1.28315 1.04651 1.29732 1.22251 1.01241 0.89360 0.98222 1.19851 0.96268 0.95236 0.82889 1.21969 1.01027 1.35242 1.04238 0.92399 1.25871 1.05101 0.95293 0.92759 1.70810 1.14522 1.32838 1.37021 0.83487 0.74475 0.75828 0.76148 1.21482 1.21279 1.20856 0.90423 0.90785 0.91552 0.84273 0.84167 0.84969 0.83261 0.90550 0.94317 0.78508 0.91184 0.95600 0.90580 0.93383 0.97331 0.96357 1.00424 0.92459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.93 9.51 37.16 0.35 -0.58 16 2 C 0.08 0.57 3.99 -25.84 -0.10 0.46 16 3 H 0.12 0.71 7.59 -51.93 -0.39 0.31 16 4 O -0.29 -2.99 10.82 -20.19 -0.22 -3.21 16 5 C 0.15 1.57 6.92 -38.96 -0.27 1.30 16 6 C -0.18 -1.83 10.04 -39.24 -0.39 -2.23 16 7 C 0.14 1.36 7.28 -39.51 -0.29 1.07 16 8 F -0.13 -1.40 17.26 2.25 0.04 -1.36 16 9 C -0.18 -1.64 10.04 -39.45 -0.40 -2.04 16 10 C -0.03 -0.29 10.03 -39.73 -0.40 -0.69 16 11 C -0.16 -1.59 5.93 -104.08 -0.62 -2.20 16 12 C 0.10 0.83 2.99 -67.51 -0.20 0.63 16 13 H 0.08 0.53 7.61 -51.93 -0.40 0.14 16 14 N -0.66 -6.39 6.25 -106.51 -0.67 -7.05 16 15 C 0.03 0.27 5.21 -3.82 -0.02 0.25 16 16 C 0.12 1.59 3.13 -26.73 -0.08 1.50 16 17 H 0.09 1.29 6.26 -51.93 -0.33 0.97 16 18 O -0.53 -8.37 13.15 -35.23 -0.46 -8.84 16 19 C 0.02 0.39 4.59 -3.83 -0.02 0.37 16 20 N -0.52 -11.24 4.70 -244.37 -1.15 -12.39 16 21 C 0.04 0.74 9.17 60.06 0.55 1.29 16 22 C 0.18 4.74 4.03 -4.97 -0.02 4.72 16 23 C -0.59 -16.78 8.52 -34.44 -0.29 -17.07 16 24 H 0.06 1.67 7.10 -52.49 -0.37 1.30 16 25 C 0.01 0.38 5.46 -17.82 -0.10 0.28 16 26 N -0.92 -27.94 13.65 55.43 0.76 -27.19 16 27 Si 1.07 25.48 29.90 -169.99 -5.08 20.40 16 28 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 31 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 34 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.13 0.97 8.00 -52.49 -0.42 0.55 16 37 H 0.35 3.03 8.09 -39.29 -0.32 2.71 16 38 H 0.08 0.76 8.09 -51.92 -0.42 0.34 16 39 H 0.04 0.35 8.08 -51.93 -0.42 -0.07 16 40 H 0.37 4.95 9.04 45.56 0.41 5.36 16 41 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 42 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 43 H 0.08 1.63 6.86 -51.93 -0.36 1.27 16 44 H 0.05 0.80 6.21 -51.93 -0.32 0.48 16 45 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.02 0.50 7.80 -51.93 -0.40 0.09 16 47 H -0.02 -0.59 7.99 -51.93 -0.41 -1.01 16 48 H 0.27 8.05 7.22 -40.82 -0.29 7.75 16 LS Contribution 394.50 15.07 5.95 5.95 Total: -1.00 -33.57 394.50 -9.74 -43.31 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.61 Total: 3.29 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -2.30 Total: -12.91 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -1.06 Total: -46.63 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -0.68 Total: -12.04 kcal Atomic # 9 Polarization: -1.40 SS G_CDS: 0.04 Total: -1.36 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.57 -9.74 -43.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577503091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.664 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds