Wall clock time and date at job start Tue Mar 31 2020 22:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.80524 * 2 1 4 4 O 1.43761 * 110.74624 * 236.69379 * 2 1 3 5 5 C 1.36141 * 109.28563 * 269.22790 * 4 2 1 6 6 C 1.39248 * 129.85438 * 161.42732 * 5 4 2 7 7 C 1.38143 * 120.22635 * 179.58895 * 6 5 4 8 8 F 1.35094 * 119.85397 * 180.02562 * 7 6 5 9 9 C 1.38521 * 120.29654 * 0.02562 * 7 6 5 10 10 C 1.38311 * 119.73814 * 0.16808 * 9 7 6 11 11 C 1.37763 * 120.01125 * 0.02562 * 10 9 7 12 12 C 1.51653 * 132.14565 * 179.59947 * 11 10 9 13 13 H 1.09002 * 110.97057 * 313.89968 * 12 11 10 14 14 N 1.46898 * 110.94371 * 77.57804 * 12 11 10 15 15 C 1.46900 * 111.00081 * 267.51820 * 14 12 11 16 16 C 1.53000 * 109.47400 * 180.02562 * 15 14 12 17 17 H 1.08998 * 109.46730 * 59.99960 * 16 15 14 18 18 O 1.42901 * 109.47092 * 300.00238 * 16 15 14 19 19 C 1.52994 * 109.47231 * 180.02562 * 16 15 14 20 20 N 1.46900 * 109.46992 * 185.00142 * 19 16 15 21 21 C 1.46897 * 111.00122 * 66.04438 * 20 19 16 22 22 C 1.46907 * 111.00174 * 189.99637 * 20 19 16 23 23 C 1.50695 * 109.47119 * 169.99800 * 22 20 19 24 24 H 1.07995 * 120.00496 * 0.02562 * 23 22 20 25 25 C 1.37880 * 119.99572 * 180.02562 * 23 22 20 26 26 N 1.31511 * 120.00327 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99951 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47297 * 59.99744 * 27 25 23 29 29 H 1.48503 * 109.47261 * 299.99924 * 27 25 23 30 30 H 1.48500 * 109.47454 * 179.97438 * 27 25 23 31 31 H 1.09006 * 109.46720 * 296.68635 * 1 2 3 32 32 H 1.08994 * 109.47476 * 56.68889 * 1 2 3 33 33 H 1.08997 * 109.46826 * 176.69217 * 1 2 3 34 34 H 1.08004 * 119.88379 * 359.61814 * 6 5 4 35 35 H 1.08002 * 120.13219 * 180.15622 * 9 7 6 36 36 H 1.07995 * 119.99674 * 179.97438 * 10 9 7 37 37 H 1.00895 * 111.00165 * 143.56516 * 14 12 11 38 38 H 1.09008 * 109.46735 * 59.99959 * 15 14 12 39 39 H 1.09002 * 109.47294 * 300.00405 * 15 14 12 40 40 H 0.96702 * 113.99949 * 299.99947 * 18 16 15 41 41 H 1.09002 * 109.47902 * 64.99836 * 19 16 15 42 42 H 1.09004 * 109.47251 * 304.99796 * 19 16 15 43 43 H 1.09003 * 109.47400 * 183.95158 * 21 20 19 44 44 H 1.08998 * 109.46894 * 303.95011 * 21 20 19 45 45 H 1.09004 * 109.47284 * 63.95403 * 21 20 19 46 46 H 1.09002 * 109.46929 * 49.99750 * 22 20 19 47 47 H 1.08998 * 109.47035 * 290.00562 * 22 20 19 48 48 H 0.97006 * 119.99995 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9172 1.0190 0.0000 4 8 2.0392 -0.7382 -1.1236 5 6 2.2147 -2.0396 -0.7643 6 6 2.3459 -3.1750 -1.5597 7 6 2.5265 -4.4148 -0.9777 8 9 2.6534 -5.5112 -1.7565 9 6 2.5779 -4.5387 0.4010 10 6 2.4441 -3.4150 1.1963 11 6 2.2601 -2.1788 0.6170 12 6 2.0775 -0.7945 1.2090 13 1 1.3547 -0.8113 2.0247 14 7 3.3620 -0.2430 1.6605 15 6 3.5983 -0.5508 3.0773 16 6 4.9420 0.0391 3.5102 17 1 4.9259 1.1200 3.3710 18 8 5.9881 -0.5276 2.7187 19 6 5.1884 -0.2821 4.9856 20 7 6.4187 0.3843 5.4330 21 6 6.2628 1.8449 5.4145 22 6 6.8170 -0.0858 6.7666 23 6 8.1974 0.4262 7.0880 24 1 8.7258 1.0397 6.3735 25 6 8.7858 0.1112 8.2946 26 7 8.1426 -0.6364 9.1646 27 14 10.4966 0.7464 8.6934 28 1 10.4903 2.2313 8.6741 29 1 11.4601 0.2423 7.6821 30 1 10.8993 0.2711 10.0415 31 1 -0.3633 0.4616 0.9183 32 1 -0.3634 0.5643 -0.8588 33 1 -0.3633 -1.0259 -0.0593 34 1 2.3069 -3.0859 -2.6354 35 1 2.7216 -5.5089 0.8532 36 1 2.4831 -3.5069 2.2716 37 1 3.4071 0.7512 1.4941 38 1 3.6138 -1.6319 3.2165 39 1 2.8005 -0.1182 3.6811 40 1 6.0612 -1.4890 2.7934 41 1 5.2930 -1.3599 5.1104 42 1 4.3463 0.0724 5.5802 43 1 7.2091 2.3147 5.6825 44 1 5.9677 2.1661 4.4157 45 1 5.4959 2.1375 6.1318 46 1 6.8211 -1.1757 6.7814 47 1 6.1100 0.2849 7.5087 48 1 7.2540 -0.9659 8.9576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577503091.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:08 Heat of formation + Delta-G solvation = -115.514838 kcal Electronic energy + Delta-G solvation = -29219.667543 eV Core-core repulsion = 24995.547358 eV Total energy + Delta-G solvation = -4224.120184 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.00387 -42.42049 -39.61618 -38.36373 -37.55701 -36.20624 -34.83576 -33.08644 -31.53555 -31.37541 -30.52594 -28.76197 -27.78791 -26.31016 -24.79392 -24.14645 -23.21970 -22.52921 -22.39214 -21.80937 -19.00555 -18.91740 -18.13906 -17.70507 -17.44204 -17.27397 -16.99596 -16.58358 -16.34775 -16.17450 -15.99020 -15.70016 -15.62333 -15.50112 -15.14972 -14.83850 -14.73422 -14.29578 -14.01580 -13.87131 -13.74731 -13.43351 -13.35172 -13.17594 -13.14371 -12.93128 -12.77563 -12.55994 -12.49647 -12.36896 -12.19824 -11.98140 -11.92577 -11.84606 -11.66233 -11.03247 -10.61364 -10.56612 -9.94939 -9.51873 -9.24133 -9.06802 -8.68575 -6.39168 0.02161 0.19805 1.53411 1.61618 1.81357 2.03691 2.38190 2.55154 2.83425 3.13225 3.21054 3.27651 3.35631 3.55260 3.68244 3.77332 3.86589 3.97288 4.00248 4.02616 4.09176 4.15821 4.26270 4.34174 4.39094 4.43553 4.53779 4.58080 4.60176 4.69563 4.70820 4.81266 4.84934 4.94131 4.95793 5.03364 5.05759 5.13533 5.15251 5.17774 5.31075 5.52844 5.75984 5.84984 5.97414 6.04564 6.30921 6.36213 6.41873 6.64351 6.96763 7.40522 8.70248 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.002144 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.293350 B =13054.115744 C =14018.555242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.074 3.926 3 H 0.134 0.866 4 O -0.307 6.307 5 C 0.134 3.866 6 C -0.193 4.193 7 C 0.122 3.878 8 F -0.141 7.141 9 C -0.183 4.183 10 C -0.036 4.036 11 C -0.171 4.171 12 C 0.106 3.894 13 H 0.093 0.907 14 N -0.674 5.674 15 C 0.040 3.960 16 C 0.128 3.872 17 H 0.094 0.906 18 O -0.555 6.555 19 C 0.023 3.977 20 N -0.537 5.537 21 C 0.041 3.959 22 C 0.195 3.805 23 C -0.599 4.599 24 H 0.052 0.948 25 C -0.037 4.037 26 N -0.938 5.938 27 Si 1.119 2.881 28 H -0.269 1.269 29 H -0.272 1.272 30 H -0.283 1.283 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.143 0.857 35 H 0.157 0.843 36 H 0.151 0.849 37 H 0.353 0.647 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.376 0.624 41 H 0.067 0.933 42 H 0.036 0.964 43 H 0.051 0.949 44 H 0.081 0.919 45 H 0.012 0.988 46 H -0.001 1.001 47 H -0.043 1.043 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.077 -1.465 -19.918 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 H 0.152 0.848 4 O -0.221 6.221 5 C 0.087 3.913 6 C -0.213 4.213 7 C 0.103 3.897 8 F -0.119 7.119 9 C -0.202 4.202 10 C -0.054 4.054 11 C -0.173 4.173 12 C -0.004 4.004 13 H 0.110 0.890 14 N -0.307 5.307 15 C -0.090 4.090 16 C 0.068 3.932 17 H 0.112 0.888 18 O -0.360 6.360 19 C -0.106 4.106 20 N -0.261 5.261 21 C -0.107 4.107 22 C 0.068 3.932 23 C -0.637 4.637 24 H 0.070 0.930 25 C -0.234 4.234 26 N -0.576 5.576 27 Si 0.940 3.060 28 H -0.194 1.194 29 H -0.197 1.197 30 H -0.208 1.208 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.161 0.839 35 H 0.175 0.825 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.224 0.776 41 H 0.085 0.915 42 H 0.054 0.946 43 H 0.070 0.930 44 H 0.100 0.900 45 H 0.030 0.970 46 H 0.017 0.983 47 H -0.025 1.025 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.040 -1.387 -19.728 26.769 hybrid contribution -2.495 -0.274 0.126 2.513 sum -20.535 -1.661 -19.603 28.438 Atomic orbital electron populations 1.22216 0.91976 1.03310 1.04765 1.23874 0.95861 0.96629 0.81860 0.84839 1.86875 1.79916 1.16312 1.39008 1.19203 0.94448 0.84909 0.92691 1.20129 1.10817 0.88992 1.01353 1.17274 1.01351 0.82108 0.88965 1.91499 1.93335 1.51987 1.75107 1.21257 1.06495 1.01352 0.91062 1.20369 0.94532 0.89515 1.01003 1.20921 1.06943 0.95953 0.93443 1.21718 0.91108 0.90037 0.97530 0.88954 1.60182 1.31650 1.20131 1.18721 1.22599 0.96458 1.01859 0.88063 1.21776 0.86171 0.98292 0.86941 0.88832 1.86573 1.54766 1.26272 1.68383 1.22865 0.91032 0.99442 0.97222 1.61841 1.31576 1.06004 1.26697 1.22229 1.00143 0.88081 1.00247 1.19544 0.94900 0.93828 0.84933 1.22294 1.02248 1.34946 1.04226 0.92991 1.27388 1.08506 0.94745 0.92805 1.70936 1.14385 1.34411 1.37823 0.82899 0.70341 0.76477 0.76237 1.19402 1.19685 1.20788 0.88488 0.90352 0.92485 0.83880 0.82525 0.83176 0.82590 0.90221 0.92524 0.77610 0.91450 0.94560 0.92972 0.90045 0.96996 0.98273 1.02534 0.93732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 9.51 71.98 0.68 -0.76 16 2 C 0.07 0.93 3.99 31.17 0.12 1.05 16 3 H 0.13 1.26 7.59 -2.38 -0.02 1.24 16 4 O -0.31 -6.08 10.82 -95.16 -1.03 -7.11 16 5 C 0.13 2.73 6.92 22.67 0.16 2.88 16 6 C -0.19 -3.90 10.04 22.49 0.23 -3.68 16 7 C 0.12 2.41 7.28 22.31 0.16 2.58 16 8 F -0.14 -2.92 17.26 44.97 0.78 -2.15 16 9 C -0.18 -3.07 10.04 22.35 0.22 -2.85 16 10 C -0.04 -0.58 10.03 22.17 0.22 -0.35 16 11 C -0.17 -3.03 5.93 -19.51 -0.12 -3.15 16 12 C 0.11 1.48 2.99 45.05 0.13 1.61 16 13 H 0.09 0.99 7.61 -2.39 -0.02 0.97 16 14 N -0.67 -11.21 6.25 -490.87 -3.07 -14.28 16 15 C 0.04 0.69 5.21 86.30 0.45 1.14 16 16 C 0.13 3.18 3.13 30.59 0.10 3.28 16 17 H 0.09 2.32 6.26 -2.39 -0.01 2.31 16 18 O -0.55 -16.52 13.15 -148.98 -1.96 -18.48 16 19 C 0.02 0.75 4.59 86.30 0.40 1.14 16 20 N -0.54 -22.87 4.70 -927.05 -4.36 -27.23 16 21 C 0.04 1.57 9.17 127.69 1.17 2.74 16 22 C 0.19 10.26 4.03 85.55 0.34 10.61 16 23 C -0.60 -34.62 8.52 25.60 0.22 -34.40 16 24 H 0.05 3.01 7.10 -2.91 -0.02 2.99 16 25 C -0.04 -2.16 5.46 84.66 0.46 -1.70 16 26 N -0.94 -58.02 13.65 21.45 0.29 -57.72 16 27 Si 1.12 50.77 29.90 68.60 2.05 52.82 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 30 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 31 H 0.10 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.14 2.59 8.06 -2.91 -0.02 2.56 16 35 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 36 H 0.15 1.81 8.00 -2.91 -0.02 1.79 16 37 H 0.35 5.16 8.09 -89.70 -0.73 4.43 16 38 H 0.08 1.36 8.09 -2.38 -0.02 1.34 16 39 H 0.06 0.81 8.08 -2.39 -0.02 0.79 16 40 H 0.38 9.64 9.04 -74.06 -0.67 8.97 16 41 H 0.07 2.16 7.93 -2.39 -0.02 2.14 16 42 H 0.04 1.09 8.12 -2.38 -0.02 1.07 16 43 H 0.05 2.21 6.86 -2.39 -0.02 2.20 16 44 H 0.08 2.54 6.21 -2.39 -0.01 2.52 16 45 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 46 H 0.00 -0.04 7.80 -2.39 -0.02 -0.06 16 47 H -0.04 -2.40 7.99 -2.39 -0.02 -2.41 16 48 H 0.25 15.81 7.22 -92.70 -0.67 15.14 16 Total: -1.00 -72.78 394.50 -2.65 -75.43 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -0.31 Total: 18.58 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: 4.96 Total: -19.85 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -7.13 Total: -99.23 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -2.99 Total: -25.60 kcal Atomic # 9 Polarization: -2.92 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 2.05 Total: 52.82 kcal Total: -72.78 -2.65 -75.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577503091.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.086 kcal (2) G-P(sol) polarization free energy of solvation -72.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds