Wall clock time and date at job start Tue Mar 31 2020 22:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76196 * 103.00126 * 2 1 4 4 C 1.38995 * 120.08330 * 0.29124 * 3 2 1 5 5 C 1.38063 * 119.92363 * 180.29754 * 4 3 2 6 6 C 1.38330 * 120.07457 * 359.70860 * 5 4 3 7 7 C 1.38271 * 120.16379 * 359.97335 * 6 5 4 8 8 C 1.38109 * 120.08247 * 0.04667 * 7 6 5 9 9 C 1.50694 * 120.04344 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47411 * 144.99776 * 9 8 7 11 11 C 1.53000 * 109.47317 * 265.00115 * 9 8 7 12 12 N 1.46903 * 109.47120 * 24.99647 * 9 8 7 13 13 C 1.46903 * 111.00177 * 155.00016 * 12 9 8 14 14 C 1.52992 * 109.47578 * 180.02562 * 13 12 9 15 15 H 1.08998 * 109.46862 * 305.00661 * 14 13 12 16 16 O 1.42905 * 109.46980 * 64.99788 * 14 13 12 17 17 C 1.52997 * 109.47482 * 185.00096 * 14 13 12 18 18 N 1.46899 * 109.47254 * 179.97438 * 17 14 13 19 19 C 1.46902 * 111.00255 * 293.95367 * 18 17 14 20 20 C 1.46901 * 111.00103 * 169.99667 * 18 17 14 21 21 C 1.50696 * 109.47399 * 190.00043 * 20 18 17 22 22 H 1.08005 * 119.99725 * 0.02562 * 21 20 18 23 23 C 1.37878 * 120.00189 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99750 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99818 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46963 * 90.00024 * 25 23 21 27 27 H 1.48502 * 109.47084 * 209.99996 * 25 23 21 28 28 H 1.48500 * 109.47321 * 330.00380 * 25 23 21 29 29 H 1.09006 * 109.47322 * 300.00185 * 1 2 3 30 30 H 1.09004 * 109.47103 * 59.99801 * 1 2 3 31 31 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.03600 * 359.97438 * 4 3 2 33 33 H 1.07993 * 119.95983 * 179.72375 * 5 4 3 34 34 H 1.08000 * 119.91212 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.96236 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47118 * 59.99574 * 11 9 8 37 37 H 1.08999 * 109.47607 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.46749 * 300.00274 * 11 9 8 39 39 H 1.00906 * 110.99771 * 31.04966 * 12 9 8 40 40 H 1.09001 * 109.46871 * 59.99686 * 13 12 9 41 41 H 1.09004 * 109.46883 * 300.00718 * 13 12 9 42 42 H 0.96696 * 114.00036 * 60.00352 * 16 14 13 43 43 H 1.09002 * 109.47153 * 59.99783 * 17 14 13 44 44 H 1.09001 * 109.46832 * 299.99974 * 17 14 13 45 45 H 1.09005 * 109.46528 * 59.99744 * 19 18 17 46 46 H 1.09000 * 109.46785 * 179.97438 * 19 18 17 47 47 H 1.08997 * 109.47044 * 300.00388 * 19 18 17 48 48 H 1.08998 * 109.47407 * 310.00536 * 20 18 17 49 49 H 1.09007 * 109.46608 * 69.99971 * 20 18 17 50 50 H 0.97008 * 119.99731 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 0.0061 5 6 1.5095 4.0106 -0.0001 6 6 2.8330 4.4131 -0.0063 7 6 3.8455 3.4714 -0.0058 8 6 3.5387 2.1249 0.0000 9 6 4.6429 1.0994 0.0000 10 1 4.3383 0.2375 0.5935 11 6 4.9263 0.6551 -1.4364 12 7 5.8578 1.6881 0.5792 13 6 6.7309 0.6482 1.1400 14 6 7.9825 1.2983 1.7330 15 1 8.4683 1.9107 0.9735 16 8 7.6124 2.1199 2.8422 17 6 8.9481 0.2093 2.2047 18 7 10.1501 0.8336 2.7736 19 6 10.9097 1.5509 1.7409 20 6 10.9915 -0.1633 3.4491 21 6 12.0768 0.5380 4.2245 22 1 12.1354 1.6164 4.2167 23 6 12.9950 -0.1971 4.9440 24 7 13.9418 0.4150 5.6211 25 14 12.8932 -2.0622 4.9581 26 1 13.7020 -2.6105 3.8398 27 1 13.4188 -2.5769 6.2480 28 1 11.4778 -2.4820 4.7974 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.1617 2.3526 0.0105 33 1 0.7213 4.7487 0.0001 34 1 3.0759 5.4654 -0.0108 35 1 4.8777 3.7893 -0.0103 36 1 5.2310 1.5172 -2.0299 37 1 5.7247 -0.0869 -1.4364 38 1 4.0248 0.2184 -1.8661 39 1 5.6273 2.3810 1.2756 40 1 7.0207 -0.0467 0.3519 41 1 6.1969 0.1084 1.9221 42 1 7.1737 1.6401 3.5580 43 1 9.2303 -0.4173 1.3587 44 1 8.4621 -0.4030 2.9643 45 1 10.2842 2.3299 1.3051 46 1 11.7940 2.0037 2.1892 47 1 11.2142 0.8515 0.9623 48 1 10.3796 -0.7524 4.1321 49 1 11.4427 -0.8211 2.7062 50 1 14.5876 -0.1022 6.1276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579114662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:27 Heat of formation + Delta-G solvation = -16.550328 kcal Electronic energy + Delta-G solvation = -26741.702762 eV Core-core repulsion = 23088.087176 eV Total energy + Delta-G solvation = -3653.615585 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.90420 -38.34739 -36.53770 -35.37106 -32.48074 -32.17921 -31.65450 -29.80515 -29.34831 -28.91925 -27.56479 -25.90653 -24.05142 -23.33672 -22.71911 -21.16610 -20.63035 -20.03056 -18.10795 -16.95749 -16.79397 -16.25074 -15.98647 -15.78527 -15.17530 -14.79606 -14.73713 -14.52303 -14.42891 -14.28815 -14.05943 -14.04253 -13.82881 -13.25841 -12.97474 -12.91480 -12.70795 -12.62183 -12.40370 -12.23387 -11.99720 -11.87606 -11.59715 -11.41393 -11.31593 -11.18474 -10.95527 -10.70648 -10.67077 -10.45037 -10.23896 -10.06905 -9.89925 -9.57053 -9.21870 -9.13944 -8.60676 -8.55871 -7.77703 -7.31303 -6.02814 -3.99729 0.86141 1.00262 1.12332 2.00274 3.28640 3.34333 3.36234 3.37812 3.81720 4.32142 4.43244 4.51121 4.57367 4.58038 4.60212 4.73026 4.82725 4.95878 5.03862 5.10956 5.14528 5.19643 5.20992 5.27187 5.32177 5.38565 5.42673 5.58115 5.60769 5.67108 5.72096 5.74014 5.91087 5.97765 6.09013 6.09684 6.16102 6.18104 6.27548 6.35859 6.56992 6.73448 6.86308 6.86869 7.02135 7.23993 7.61549 7.92208 7.94275 8.11569 8.68969 9.07113 9.58818 11.10379 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002025 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.767347 B =13822.569053 C =14496.647501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 S -0.110 6.110 3 C -0.083 4.083 4 C -0.135 4.135 5 C -0.105 4.105 6 C -0.122 4.122 7 C -0.088 4.088 8 C -0.067 4.067 9 C 0.123 3.877 10 H 0.058 0.942 11 C -0.134 4.134 12 N -0.678 5.678 13 C 0.027 3.973 14 C 0.115 3.885 15 H 0.105 0.895 16 O -0.545 6.545 17 C 0.022 3.978 18 N -0.519 5.519 19 C 0.035 3.965 20 C 0.162 3.838 21 C -0.507 4.507 22 H 0.082 0.918 23 C 0.066 3.934 24 N -0.900 5.900 25 Si 0.876 3.124 26 H -0.278 1.278 27 H -0.286 1.286 28 H -0.268 1.268 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.141 0.859 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.350 0.650 40 H 0.079 0.921 41 H 0.033 0.967 42 H 0.367 0.633 43 H 0.030 0.970 44 H 0.068 0.932 45 H 0.051 0.949 46 H 0.080 0.920 47 H 0.009 0.991 48 H 0.026 0.974 49 H -0.018 1.018 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.084 1.954 -14.946 33.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.319 4.319 2 S 0.133 5.867 3 C -0.196 4.196 4 C -0.159 4.159 5 C -0.124 4.124 6 C -0.142 4.142 7 C -0.108 4.108 8 C -0.074 4.074 9 C 0.013 3.987 10 H 0.075 0.925 11 C -0.192 4.192 12 N -0.311 5.311 13 C -0.103 4.103 14 C 0.055 3.945 15 H 0.123 0.877 16 O -0.348 6.348 17 C -0.108 4.108 18 N -0.243 5.243 19 C -0.113 4.113 20 C 0.035 3.965 21 C -0.545 4.545 22 H 0.100 0.900 23 C -0.135 4.135 24 N -0.539 5.539 25 Si 0.703 3.297 26 H -0.204 1.204 27 H -0.212 1.212 28 H -0.193 1.193 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.170 0.830 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.213 0.787 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.027 0.973 48 H 0.044 0.956 49 H -0.001 1.001 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.835 1.663 -15.432 32.747 hybrid contribution -1.331 -1.293 0.597 1.949 sum -30.166 0.371 -14.835 33.618 Atomic orbital electron populations 1.23724 0.95587 1.07071 1.05548 1.85610 1.05685 1.03108 1.92310 1.21580 0.95964 0.96556 1.05517 1.21094 0.97914 0.93268 1.03591 1.21055 0.96794 0.95161 0.99434 1.21249 0.92659 0.99887 1.00435 1.21135 1.00442 0.91542 0.97686 1.19610 0.91795 0.94889 1.01058 1.20421 0.87191 0.93821 0.97294 0.92453 1.21761 1.01449 1.01546 0.94478 1.60580 1.16023 1.15215 1.39274 1.22746 0.94887 0.94145 0.98478 1.21952 0.91632 0.92374 0.88559 0.87728 1.86610 1.80818 1.37725 1.29687 1.22761 0.94099 0.95647 0.98301 1.61856 1.06361 1.28687 1.27374 1.22292 0.98824 0.97268 0.92938 1.20205 0.92601 0.90495 0.93163 1.21045 1.09546 0.95814 1.28079 0.90033 1.24913 0.95198 0.98168 0.95206 1.69899 1.16573 1.35550 1.31927 0.86855 0.78619 0.86632 0.77545 1.20403 1.21160 1.19317 0.89832 0.89807 0.87430 0.86015 0.85845 0.85588 0.84136 0.91836 0.92215 0.92054 0.82953 0.90237 0.94860 0.78652 0.95203 0.91348 0.93011 0.90163 0.97281 0.95613 1.00061 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.15 101.05 0.92 0.17 16 2 S -0.11 -0.91 20.43 -107.50 -2.20 -3.11 16 3 C -0.08 -0.78 6.11 -39.03 -0.24 -1.02 16 4 C -0.13 -1.09 9.36 -39.37 -0.37 -1.46 16 5 C -0.10 -0.79 10.04 -39.61 -0.40 -1.19 16 6 C -0.12 -0.99 10.04 -39.54 -0.40 -1.39 16 7 C -0.09 -0.82 8.85 -39.62 -0.35 -1.18 16 8 C -0.07 -0.67 4.95 -104.41 -0.52 -1.18 16 9 C 0.12 1.23 2.29 -68.87 -0.16 1.07 16 10 H 0.06 0.62 6.68 -51.93 -0.35 0.27 16 11 C -0.13 -1.29 9.39 37.16 0.35 -0.94 16 12 N -0.68 -7.23 5.57 -107.95 -0.60 -7.83 16 13 C 0.03 0.31 5.16 -3.83 -0.02 0.29 16 14 C 0.11 1.59 3.08 -26.74 -0.08 1.51 16 15 H 0.11 1.56 6.55 -51.93 -0.34 1.22 16 16 O -0.54 -8.11 12.72 -35.23 -0.45 -8.56 16 17 C 0.02 0.36 4.62 -3.83 -0.02 0.34 16 18 N -0.52 -10.99 4.62 -244.37 -1.13 -12.12 16 19 C 0.04 0.70 9.14 60.07 0.55 1.24 16 20 C 0.16 3.98 3.79 -4.98 -0.02 3.96 16 21 C -0.51 -14.62 9.01 -34.44 -0.31 -14.93 16 22 H 0.08 2.57 7.37 -52.48 -0.39 2.19 16 23 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 24 N -0.90 -27.87 13.96 55.43 0.77 -27.10 16 25 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 28 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 29 H 0.08 0.37 7.74 -51.92 -0.40 -0.03 16 30 H 0.08 0.36 7.76 -51.92 -0.40 -0.05 16 31 H 0.11 0.40 8.14 -51.92 -0.42 -0.02 16 32 H 0.12 0.74 5.88 -52.48 -0.31 0.43 16 33 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 34 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 1.30 6.97 -52.48 -0.37 0.93 16 36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.57 7.45 -51.93 -0.39 0.18 16 38 H 0.06 0.56 7.69 -51.93 -0.40 0.16 16 39 H 0.35 3.84 6.82 -39.29 -0.27 3.57 16 40 H 0.08 0.87 7.44 -51.93 -0.39 0.49 16 41 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 42 H 0.37 4.50 9.05 45.56 0.41 4.91 16 43 H 0.03 0.48 8.12 -51.93 -0.42 0.05 16 44 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 45 H 0.05 0.90 6.47 -51.93 -0.34 0.57 16 46 H 0.08 1.78 6.76 -51.93 -0.35 1.42 16 47 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 48 H 0.03 0.64 6.99 -51.93 -0.36 0.28 16 49 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 404.11 15.07 6.09 6.09 Total: -1.00 -32.37 404.11 -10.89 -43.26 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.56 Total: 5.18 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.15 Total: -12.85 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: -0.96 Total: -47.05 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.45 Total: -8.56 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -2.20 Total: -3.11 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.37 -10.89 -43.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579114662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.708 kcal (2) G-P(sol) polarization free energy of solvation -32.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds