Wall clock time and date at job start Tue Mar 31 2020 22:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76196 * 103.00126 * 2 1 4 4 C 1.38995 * 120.08330 * 0.29124 * 3 2 1 5 5 C 1.38063 * 119.92363 * 180.29754 * 4 3 2 6 6 C 1.38330 * 120.07457 * 359.70860 * 5 4 3 7 7 C 1.38271 * 120.16379 * 359.97335 * 6 5 4 8 8 C 1.38109 * 120.08247 * 0.04667 * 7 6 5 9 9 C 1.50694 * 120.04344 * 179.97438 * 8 7 6 10 10 H 1.08996 * 109.47411 * 144.99776 * 9 8 7 11 11 C 1.53000 * 109.47317 * 265.00115 * 9 8 7 12 12 N 1.46903 * 109.47120 * 24.99647 * 9 8 7 13 13 C 1.46903 * 111.00177 * 155.00016 * 12 9 8 14 14 C 1.52992 * 109.47578 * 180.02562 * 13 12 9 15 15 H 1.08998 * 109.46862 * 305.00661 * 14 13 12 16 16 O 1.42905 * 109.46980 * 64.99788 * 14 13 12 17 17 C 1.52997 * 109.47482 * 185.00096 * 14 13 12 18 18 N 1.46899 * 109.47254 * 179.97438 * 17 14 13 19 19 C 1.46902 * 111.00255 * 293.95367 * 18 17 14 20 20 C 1.46901 * 111.00103 * 169.99667 * 18 17 14 21 21 C 1.50696 * 109.47399 * 190.00043 * 20 18 17 22 22 H 1.08005 * 119.99725 * 0.02562 * 21 20 18 23 23 C 1.37878 * 120.00189 * 180.02562 * 21 20 18 24 24 N 1.31512 * 119.99750 * 180.02562 * 23 21 20 25 25 Si 1.86794 * 119.99818 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46963 * 90.00024 * 25 23 21 27 27 H 1.48502 * 109.47084 * 209.99996 * 25 23 21 28 28 H 1.48500 * 109.47321 * 330.00380 * 25 23 21 29 29 H 1.09006 * 109.47322 * 300.00185 * 1 2 3 30 30 H 1.09004 * 109.47103 * 59.99801 * 1 2 3 31 31 H 1.09000 * 109.47201 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.03600 * 359.97438 * 4 3 2 33 33 H 1.07993 * 119.95983 * 179.72375 * 5 4 3 34 34 H 1.08000 * 119.91212 * 180.02562 * 6 5 4 35 35 H 1.08004 * 119.96236 * 180.02562 * 7 6 5 36 36 H 1.09006 * 109.47118 * 59.99574 * 11 9 8 37 37 H 1.08999 * 109.47607 * 180.02562 * 11 9 8 38 38 H 1.09003 * 109.46749 * 300.00274 * 11 9 8 39 39 H 1.00906 * 110.99771 * 31.04966 * 12 9 8 40 40 H 1.09001 * 109.46871 * 59.99686 * 13 12 9 41 41 H 1.09004 * 109.46883 * 300.00718 * 13 12 9 42 42 H 0.96696 * 114.00036 * 60.00352 * 16 14 13 43 43 H 1.09002 * 109.47153 * 59.99783 * 17 14 13 44 44 H 1.09001 * 109.46832 * 299.99974 * 17 14 13 45 45 H 1.09005 * 109.46528 * 59.99744 * 19 18 17 46 46 H 1.09000 * 109.46785 * 179.97438 * 19 18 17 47 47 H 1.08997 * 109.47044 * 300.00388 * 19 18 17 48 48 H 1.08998 * 109.47407 * 310.00536 * 20 18 17 49 49 H 1.09007 * 109.46608 * 69.99971 * 20 18 17 50 50 H 0.97008 * 119.99731 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1952 2.6662 0.0061 5 6 1.5095 4.0106 -0.0001 6 6 2.8330 4.4131 -0.0063 7 6 3.8455 3.4714 -0.0058 8 6 3.5387 2.1249 0.0000 9 6 4.6429 1.0994 0.0000 10 1 4.3383 0.2375 0.5935 11 6 4.9263 0.6551 -1.4364 12 7 5.8578 1.6881 0.5792 13 6 6.7309 0.6482 1.1400 14 6 7.9825 1.2983 1.7330 15 1 8.4683 1.9107 0.9735 16 8 7.6124 2.1199 2.8422 17 6 8.9481 0.2093 2.2047 18 7 10.1501 0.8336 2.7736 19 6 10.9097 1.5509 1.7409 20 6 10.9915 -0.1633 3.4491 21 6 12.0768 0.5380 4.2245 22 1 12.1354 1.6164 4.2167 23 6 12.9950 -0.1971 4.9440 24 7 13.9418 0.4150 5.6211 25 14 12.8932 -2.0622 4.9581 26 1 13.7020 -2.6105 3.8398 27 1 13.4188 -2.5769 6.2480 28 1 11.4778 -2.4820 4.7974 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.1617 2.3526 0.0105 33 1 0.7213 4.7487 0.0001 34 1 3.0759 5.4654 -0.0108 35 1 4.8777 3.7893 -0.0103 36 1 5.2310 1.5172 -2.0299 37 1 5.7247 -0.0869 -1.4364 38 1 4.0248 0.2184 -1.8661 39 1 5.6273 2.3810 1.2756 40 1 7.0207 -0.0467 0.3519 41 1 6.1969 0.1084 1.9221 42 1 7.1737 1.6401 3.5580 43 1 9.2303 -0.4173 1.3587 44 1 8.4621 -0.4030 2.9643 45 1 10.2842 2.3299 1.3051 46 1 11.7940 2.0037 2.1892 47 1 11.2142 0.8515 0.9623 48 1 10.3796 -0.7524 4.1321 49 1 11.4427 -0.8211 2.7062 50 1 14.5876 -0.1022 6.1276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579114662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:26 Heat of formation + Delta-G solvation = -39.789284 kcal Electronic energy + Delta-G solvation = -26742.710478 eV Core-core repulsion = 23088.087176 eV Total energy + Delta-G solvation = -3654.623302 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.58510 -39.53388 -37.69220 -36.59838 -34.59469 -33.07666 -32.24766 -31.00751 -30.05589 -29.68326 -29.18998 -27.29673 -25.30448 -24.10669 -23.64429 -22.43668 -21.83125 -21.22103 -19.02691 -18.75376 -17.60966 -17.29879 -16.97837 -16.68768 -16.51674 -16.03532 -15.89332 -15.70918 -15.31980 -15.12547 -15.11162 -14.78395 -14.66884 -14.54469 -14.30762 -13.92093 -13.72272 -13.54143 -13.37352 -13.35661 -13.10926 -12.94052 -12.78254 -12.57657 -12.56157 -12.46218 -12.28158 -12.03796 -11.98678 -11.81616 -11.58637 -11.49573 -11.04363 -10.79268 -10.74681 -10.67401 -9.79353 -9.44006 -8.96777 -8.38653 -8.27695 -6.31160 0.23561 0.37693 0.58117 1.34116 1.36166 1.47047 1.49130 2.34485 2.71574 2.85474 3.05061 3.35558 3.63522 3.69933 3.93552 3.98850 4.13637 4.13884 4.23479 4.24471 4.25876 4.29281 4.38089 4.45817 4.49006 4.53275 4.57844 4.65665 4.67104 4.76240 4.77558 4.84695 4.88472 4.91112 4.94915 5.02065 5.07712 5.12169 5.26671 5.29127 5.32826 5.45020 5.53626 5.56687 5.96253 5.98597 6.05767 6.36066 6.38294 6.66838 6.75382 6.96027 7.32132 8.89112 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.020303 B = 0.002025 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.767347 B =13822.569053 C =14496.647501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.146 6.146 3 C -0.093 4.093 4 C -0.140 4.140 5 C -0.106 4.106 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.084 4.084 9 C 0.129 3.871 10 H 0.051 0.949 11 C -0.129 4.129 12 N -0.679 5.679 13 C 0.039 3.961 14 C 0.127 3.873 15 H 0.095 0.905 16 O -0.562 6.562 17 C 0.022 3.978 18 N -0.539 5.539 19 C 0.041 3.959 20 C 0.172 3.828 21 C -0.516 4.516 22 H 0.035 0.965 23 C 0.004 3.996 24 N -0.949 5.949 25 Si 0.951 3.049 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.248 1.248 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.348 0.652 40 H 0.086 0.914 41 H 0.040 0.960 42 H 0.379 0.621 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.045 0.955 47 H 0.021 0.979 48 H 0.030 0.970 49 H -0.015 1.015 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.857 0.523 -15.958 36.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.096 5.904 3 C -0.206 4.206 4 C -0.164 4.164 5 C -0.126 4.126 6 C -0.149 4.149 7 C -0.121 4.121 8 C -0.090 4.090 9 C 0.019 3.981 10 H 0.069 0.931 11 C -0.187 4.187 12 N -0.312 5.312 13 C -0.091 4.091 14 C 0.067 3.933 15 H 0.113 0.887 16 O -0.367 6.367 17 C -0.107 4.107 18 N -0.262 5.262 19 C -0.107 4.107 20 C 0.044 3.956 21 C -0.554 4.554 22 H 0.053 0.947 23 C -0.193 4.193 24 N -0.590 5.590 25 Si 0.774 3.226 26 H -0.193 1.193 27 H -0.207 1.207 28 H -0.171 1.171 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.140 0.860 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.160 0.840 35 H 0.153 0.847 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.168 0.832 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.226 0.774 43 H 0.061 0.939 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.048 0.952 49 H 0.003 0.997 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -31.637 0.238 -16.463 35.665 hybrid contribution -0.543 -0.714 0.898 1.270 sum -32.180 -0.476 -15.564 35.749 Atomic orbital electron populations 1.23799 0.92421 1.08288 1.06407 1.85677 1.09240 1.03120 1.92371 1.21718 0.96076 0.97113 1.05723 1.21408 0.98663 0.93354 1.02964 1.21392 0.97211 0.95612 0.98338 1.21509 0.92800 1.00576 0.99991 1.21190 1.00641 0.91783 0.98444 1.19657 0.92130 0.95002 1.02190 1.20335 0.86924 0.93683 0.97113 0.93118 1.21709 1.01536 1.01220 0.94259 1.60563 1.16467 1.15056 1.39112 1.22570 0.93787 0.94031 0.98736 1.21790 0.92151 0.91305 0.88038 0.88726 1.86580 1.81047 1.38633 1.30461 1.22869 0.92415 0.96585 0.98816 1.61734 1.07233 1.28513 1.28745 1.22196 0.97949 0.97923 0.92623 1.19960 0.91818 0.90712 0.93061 1.21274 1.11261 0.94055 1.28824 0.94670 1.25904 0.94575 1.04216 0.94617 1.70063 1.17740 1.37990 1.33166 0.85667 0.79819 0.79216 0.77907 1.19336 1.20659 1.17124 0.89057 0.88794 0.86036 0.84087 0.83378 0.83962 0.84670 0.92463 0.92156 0.91812 0.83178 0.89588 0.94145 0.77366 0.93941 0.90553 0.90741 0.93649 0.96095 0.95178 0.99706 0.92450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.15 113.37 1.04 -0.06 16 2 S -0.15 -2.27 20.43 -56.49 -1.15 -3.43 16 3 C -0.09 -1.64 6.11 22.62 0.14 -1.50 16 4 C -0.14 -2.00 9.36 22.41 0.21 -1.79 16 5 C -0.11 -1.38 10.04 22.25 0.22 -1.16 16 6 C -0.13 -1.91 10.04 22.30 0.22 -1.68 16 7 C -0.10 -1.83 8.85 22.25 0.20 -1.63 16 8 C -0.08 -1.60 4.95 -19.72 -0.10 -1.70 16 9 C 0.13 2.50 2.29 44.17 0.10 2.60 16 10 H 0.05 1.06 6.68 -2.39 -0.02 1.04 16 11 C -0.13 -2.39 9.39 71.98 0.68 -1.71 16 12 N -0.68 -13.88 5.57 -495.46 -2.76 -16.64 16 13 C 0.04 0.81 5.16 86.30 0.44 1.25 16 14 C 0.13 3.33 3.08 30.59 0.09 3.43 16 15 H 0.09 2.69 6.55 -2.39 -0.02 2.68 16 16 O -0.56 -16.19 12.72 -148.98 -1.90 -18.08 16 17 C 0.02 0.69 4.62 86.30 0.40 1.09 16 18 N -0.54 -22.50 4.62 -927.04 -4.28 -26.79 16 19 C 0.04 1.64 9.14 127.69 1.17 2.81 16 20 C 0.17 8.33 3.79 85.56 0.32 8.65 16 21 C -0.52 -30.54 9.01 25.60 0.23 -30.31 16 22 H 0.03 2.34 7.37 -2.91 -0.02 2.32 16 23 C 0.00 0.23 5.47 84.66 0.46 0.69 16 24 N -0.95 -60.33 13.96 21.45 0.30 -60.03 16 25 Si 0.95 44.44 27.47 68.60 1.88 46.32 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 28 H -0.25 -10.67 6.54 99.48 0.65 -10.02 16 29 H 0.09 0.59 7.74 -2.39 -0.02 0.57 16 30 H 0.09 0.56 7.76 -2.39 -0.02 0.54 16 31 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.14 1.35 5.88 -2.91 -0.02 1.33 16 33 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 34 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 35 H 0.14 2.49 6.97 -2.91 -0.02 2.47 16 36 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.06 1.08 7.45 -2.39 -0.02 1.06 16 38 H 0.06 1.13 7.69 -2.39 -0.02 1.11 16 39 H 0.35 7.42 6.82 -89.69 -0.61 6.81 16 40 H 0.09 1.71 7.44 -2.39 -0.02 1.69 16 41 H 0.04 0.80 8.06 -2.39 -0.02 0.78 16 42 H 0.38 8.85 9.05 -74.06 -0.67 8.18 16 43 H 0.04 1.24 8.12 -2.39 -0.02 1.22 16 44 H 0.08 2.25 7.93 -2.39 -0.02 2.24 16 45 H 0.07 2.57 6.47 -2.38 -0.02 2.56 16 46 H 0.04 2.09 6.76 -2.39 -0.02 2.07 16 47 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 48 H 0.03 1.44 6.99 -2.39 -0.02 1.42 16 49 H -0.01 -0.70 7.55 -2.38 -0.02 -0.72 16 50 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 Total: -1.00 -71.31 404.11 -2.47 -73.78 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.40 Total: 25.88 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 5.83 Total: -21.03 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -6.74 Total: -103.45 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -1.90 Total: -18.08 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.32 kcal Atomic # 16 Polarization: -2.27 SS G_CDS: -1.15 Total: -3.43 kcal Total: -71.31 -2.47 -73.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579114662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.996 kcal (2) G-P(sol) polarization free energy of solvation -71.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds