Wall clock time and date at job start Tue Mar 31 2020 22:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76209 * 102.99804 * 2 1 4 4 C 1.38968 * 120.07868 * 180.02562 * 3 2 1 5 5 C 1.38085 * 119.91541 * 179.74367 * 4 3 2 6 6 C 1.38304 * 120.08170 * 0.28085 * 5 4 3 7 7 C 1.50703 * 119.91577 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47485 * 20.00192 * 7 6 5 9 9 C 1.52997 * 109.46939 * 259.99735 * 7 6 5 10 10 N 1.46901 * 109.46679 * 139.99939 * 7 6 5 11 11 C 1.46896 * 111.00137 * 204.99923 * 10 7 6 12 12 C 1.53004 * 109.47231 * 179.97438 * 11 10 7 13 13 H 1.09000 * 109.46716 * 60.00491 * 12 11 10 14 14 O 1.42894 * 109.47239 * 300.00299 * 12 11 10 15 15 C 1.53002 * 109.46780 * 180.02562 * 12 11 10 16 16 N 1.46904 * 109.46555 * 185.00263 * 15 12 11 17 17 C 1.46900 * 111.00193 * 66.04712 * 16 15 12 18 18 C 1.46901 * 110.99467 * 189.99908 * 16 15 12 19 19 C 1.50707 * 109.46820 * 169.99949 * 18 16 15 20 20 H 1.08001 * 120.00066 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99892 * 179.97438 * 19 18 16 22 22 N 1.31516 * 119.99995 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99847 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47154 * 60.00228 * 23 21 19 25 25 H 1.48501 * 109.46924 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47217 * 300.00183 * 23 21 19 27 27 C 1.38301 * 120.15851 * 359.95062 * 6 5 4 28 28 C 1.38078 * 120.08143 * 0.04601 * 27 6 5 29 29 H 1.08998 * 109.47528 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47304 * 300.00002 * 1 2 3 32 32 H 1.08002 * 120.04475 * 0.02806 * 4 3 2 33 33 H 1.07999 * 119.95830 * 180.25063 * 5 4 3 34 34 H 1.09011 * 109.46862 * 180.02562 * 9 7 6 35 35 H 1.09005 * 109.47466 * 300.00060 * 9 7 6 36 36 H 1.09001 * 109.47181 * 60.00572 * 9 7 6 37 37 H 1.00902 * 111.00305 * 81.04571 * 10 7 6 38 38 H 1.08999 * 109.47323 * 300.00221 * 11 10 7 39 39 H 1.09000 * 109.47194 * 59.99846 * 11 10 7 40 40 H 0.96706 * 113.99543 * 299.99423 * 14 12 11 41 41 H 1.08998 * 109.47110 * 304.99779 * 15 12 11 42 42 H 1.08996 * 109.47456 * 65.00468 * 15 12 11 43 43 H 1.08999 * 109.47275 * 59.99750 * 17 16 15 44 44 H 1.09004 * 109.46919 * 179.97438 * 17 16 15 45 45 H 1.08993 * 109.47059 * 299.99598 * 17 16 15 46 46 H 1.08999 * 109.47447 * 289.99734 * 18 16 15 47 47 H 1.08997 * 109.47200 * 50.00037 * 18 16 15 48 48 H 0.96998 * 119.99695 * 179.97438 * 22 21 19 49 49 H 1.08006 * 119.95669 * 180.02562 * 27 6 5 50 50 H 1.08003 * 120.03779 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1251 -0.0005 5 6 3.8454 3.4714 -0.0059 6 6 2.8326 4.4132 -0.0048 7 6 3.1716 5.8816 -0.0101 8 1 4.1930 6.0175 -0.3657 9 6 3.0473 6.4388 1.4094 10 7 2.2448 6.5949 -0.8991 11 6 2.8477 7.8366 -1.4014 12 6 1.8551 8.5495 -2.3220 13 1 0.9482 8.7854 -1.7652 14 8 1.5304 7.6983 -3.4228 15 6 2.4835 9.8425 -2.8457 16 7 1.4901 10.5861 -3.6321 17 6 0.3874 11.0530 -2.7812 18 6 2.1159 11.7075 -4.3454 19 6 1.1306 12.2925 -5.3243 20 1 0.1390 11.8730 -5.4084 21 6 1.4952 13.3634 -6.1126 22 7 2.7029 13.8740 -6.0106 23 14 0.2742 14.0881 -7.3264 24 1 -0.9233 14.5729 -6.5941 25 1 0.9062 15.2226 -8.0466 26 1 -0.1313 13.0455 -8.3029 27 6 1.5095 4.0106 0.0005 28 6 1.1952 2.6661 0.0058 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.3302 1.3903 -0.0014 33 1 4.8776 3.7894 -0.0104 34 1 3.2921 7.5010 1.4055 35 1 2.0259 6.3030 1.7649 36 1 3.7351 5.9095 2.0689 37 1 1.3687 6.7806 -0.4342 38 1 3.0958 8.4857 -0.5617 39 1 3.7545 7.6008 -1.9585 40 1 2.2917 7.4474 -3.9638 41 1 2.8123 10.4532 -2.0049 42 1 3.3393 9.6013 -3.4761 43 1 0.7805 11.7091 -2.0045 44 1 -0.3333 11.6007 -3.3885 45 1 -0.1029 10.1962 -2.3192 46 1 2.4142 12.4728 -3.6290 47 1 2.9943 11.3511 -4.8833 48 1 2.9594 14.6272 -6.5654 49 1 0.7211 4.7488 0.0009 50 1 0.1617 2.3525 0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580065993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:36 Heat of formation + Delta-G solvation = -22.258111 kcal Electronic energy + Delta-G solvation = -26304.433794 eV Core-core repulsion = 22650.570700 eV Total energy + Delta-G solvation = -3653.863093 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.80032 -38.25795 -36.55592 -35.26059 -32.53486 -32.21172 -31.43387 -29.91399 -29.21712 -28.63592 -27.05337 -25.81450 -24.18974 -23.45372 -22.67539 -21.35082 -20.82598 -20.10909 -18.09890 -16.81192 -16.44061 -16.00630 -15.87859 -15.48588 -15.08498 -15.00023 -14.63723 -14.51820 -14.35114 -14.22447 -14.16558 -13.80883 -13.58100 -13.42506 -13.27772 -13.06444 -12.72235 -12.60118 -12.56927 -11.96858 -11.86018 -11.82579 -11.52691 -11.31532 -11.15163 -11.08877 -10.89053 -10.76118 -10.66373 -10.57226 -10.27356 -9.97380 -9.83940 -9.55331 -9.22079 -9.10325 -8.54363 -8.42535 -7.68048 -7.19357 -6.01935 -4.02919 0.93251 1.14421 1.18619 2.05116 3.34833 3.38363 3.39284 3.42150 3.88121 4.43086 4.48102 4.53264 4.63615 4.64945 4.65270 4.74654 4.82780 4.90603 4.93223 5.09479 5.16028 5.19797 5.26075 5.31603 5.35044 5.36011 5.48768 5.50960 5.58711 5.63063 5.69277 5.76067 5.79375 5.99890 6.04621 6.06905 6.18237 6.29253 6.34123 6.40992 6.63775 6.75616 6.84934 7.17463 7.27539 7.32666 7.80941 8.05747 8.15655 8.21870 8.56103 9.04733 9.61161 11.08966 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.001716 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.444632 B =16316.349379 C =16941.518790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.129 6.129 3 C -0.088 4.088 4 C -0.100 4.100 5 C -0.098 4.098 6 C -0.066 4.066 7 C 0.121 3.879 8 H 0.086 0.914 9 C -0.179 4.179 10 N -0.669 5.669 11 C 0.026 3.974 12 C 0.117 3.883 13 H 0.091 0.909 14 O -0.536 6.536 15 C 0.025 3.975 16 N -0.529 5.529 17 C 0.036 3.964 18 C 0.193 3.807 19 C -0.506 4.506 20 H 0.063 0.937 21 C 0.054 3.946 22 N -0.900 5.900 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.275 1.275 27 C -0.076 4.076 28 C -0.133 4.133 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.341 0.659 38 H 0.037 0.963 39 H 0.076 0.924 40 H 0.369 0.631 41 H 0.026 0.974 42 H 0.070 0.930 43 H 0.007 0.993 44 H 0.075 0.925 45 H 0.046 0.954 46 H -0.011 1.011 47 H 0.028 0.972 48 H 0.261 0.739 49 H 0.125 0.875 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.524 -24.782 17.783 30.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.113 5.887 3 C -0.201 4.201 4 C -0.123 4.123 5 C -0.118 4.118 6 C -0.069 4.069 7 C 0.011 3.989 8 H 0.105 0.895 9 C -0.238 4.238 10 N -0.300 5.300 11 C -0.104 4.104 12 C 0.057 3.943 13 H 0.109 0.891 14 O -0.339 6.339 15 C -0.105 4.105 16 N -0.253 5.253 17 C -0.112 4.112 18 C 0.068 3.932 19 C -0.545 4.545 20 H 0.082 0.918 21 C -0.147 4.147 22 N -0.540 5.540 23 Si 0.727 3.273 24 H -0.203 1.203 25 H -0.214 1.214 26 H -0.201 1.201 27 C -0.096 4.096 28 C -0.156 4.156 29 H 0.104 0.896 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.160 0.840 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.215 0.785 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.026 0.974 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.006 0.994 47 H 0.046 0.954 48 H 0.071 0.929 49 H 0.143 0.857 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.645 -26.305 17.024 31.340 hybrid contribution -0.444 2.749 0.548 2.838 sum 0.201 -23.556 17.571 29.389 Atomic orbital electron populations 1.23660 0.94613 1.07045 1.05802 1.85441 1.06657 1.03737 1.92864 1.21656 0.96746 0.96085 1.05580 1.20663 0.94155 0.95982 1.01511 1.20916 0.99061 0.92067 0.99785 1.19798 0.93284 0.94673 0.99096 1.20464 0.97299 0.89898 0.91232 0.89541 1.22501 1.02613 1.01303 0.97351 1.60471 1.05862 1.23352 1.40271 1.22770 0.98810 0.90376 0.98402 1.21865 0.97066 0.88352 0.87066 0.89074 1.86587 1.37210 1.68288 1.41826 1.22729 0.95987 0.95084 0.96693 1.62022 1.09563 1.27581 1.26157 1.22253 0.95686 0.97732 0.95546 1.19740 0.94994 0.85950 0.92536 1.21136 0.99500 1.13759 1.20060 0.91843 1.24998 0.95446 0.96837 0.97426 1.69950 1.18550 1.24964 1.40552 0.86540 0.81044 0.78506 0.81200 1.20318 1.21397 1.20098 1.20800 0.96251 0.94853 0.97647 1.21138 0.98048 0.93226 1.03219 0.89581 0.87472 0.89762 0.85676 0.85666 0.92147 0.92194 0.91816 0.84030 0.94516 0.90592 0.78533 0.95606 0.91126 0.97421 0.90666 0.93552 0.99352 0.95351 0.92916 0.85698 0.86040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 9.15 101.05 0.92 0.15 16 2 S -0.13 -1.07 22.57 -107.50 -2.43 -3.49 16 3 C -0.09 -0.84 6.11 -39.04 -0.24 -1.08 16 4 C -0.10 -0.91 9.79 -39.37 -0.39 -1.30 16 5 C -0.10 -0.86 9.66 -39.61 -0.38 -1.25 16 6 C -0.07 -0.61 4.96 -104.57 -0.52 -1.12 16 7 C 0.12 1.04 2.79 -68.86 -0.19 0.84 16 8 H 0.09 0.73 7.66 -51.93 -0.40 0.34 16 9 C -0.18 -1.32 9.14 37.16 0.34 -0.98 16 10 N -0.67 -6.66 5.57 -107.95 -0.60 -7.26 16 11 C 0.03 0.28 5.15 -3.82 -0.02 0.26 16 12 C 0.12 1.63 3.13 -26.73 -0.08 1.55 16 13 H 0.09 1.31 6.34 -51.93 -0.33 0.98 16 14 O -0.54 -8.45 13.15 -35.23 -0.46 -8.91 16 15 C 0.02 0.43 4.59 -3.82 -0.02 0.41 16 16 N -0.53 -11.46 4.70 -244.37 -1.15 -12.61 16 17 C 0.04 0.72 9.15 60.06 0.55 1.27 16 18 C 0.19 5.06 4.72 -4.97 -0.02 5.04 16 19 C -0.51 -14.40 8.46 -34.44 -0.29 -14.69 16 20 H 0.06 1.80 7.12 -52.49 -0.37 1.42 16 21 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 22 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 23 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.08 -0.71 9.31 -39.62 -0.37 -1.08 16 28 C -0.13 -1.22 9.36 -39.37 -0.37 -1.59 16 29 H 0.09 0.45 7.76 -51.93 -0.40 0.05 16 30 H 0.11 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.40 7.74 -51.92 -0.40 0.00 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.13 0.87 8.03 -52.49 -0.42 0.44 16 34 H 0.06 0.45 7.45 -51.92 -0.39 0.06 16 35 H 0.06 0.43 8.13 -51.93 -0.42 0.01 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.34 3.24 7.81 -39.29 -0.31 2.93 16 38 H 0.04 0.37 7.44 -51.93 -0.39 -0.01 16 39 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 40 H 0.37 4.95 9.04 45.56 0.41 5.36 16 41 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.07 1.20 7.93 -51.93 -0.41 0.79 16 43 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.07 1.61 6.76 -51.93 -0.35 1.25 16 45 H 0.05 0.79 6.37 -51.93 -0.33 0.46 16 46 H -0.01 -0.32 8.12 -51.93 -0.42 -0.74 16 47 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.13 1.08 7.24 -52.48 -0.38 0.70 16 50 H 0.12 0.91 5.88 -52.48 -0.31 0.60 16 LS Contribution 412.78 15.07 6.22 6.22 Total: -1.00 -32.10 412.78 -11.58 -43.67 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -7.70 Total: 3.79 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.17 Total: -12.10 kcal Atomic # 7 Polarization: -45.01 SS G_CDS: -1.01 Total: -46.02 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.46 Total: -8.91 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: -1.07 SS G_CDS: -2.43 Total: -3.49 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -32.10 -11.58 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580065993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.416 kcal (2) G-P(sol) polarization free energy of solvation -32.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds