Wall clock time and date at job start Tue Mar 31 2020 22:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76209 * 102.99804 * 2 1 4 4 C 1.38968 * 120.07868 * 180.02562 * 3 2 1 5 5 C 1.38085 * 119.91541 * 179.74367 * 4 3 2 6 6 C 1.38304 * 120.08170 * 0.28085 * 5 4 3 7 7 C 1.50703 * 119.91577 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47485 * 20.00192 * 7 6 5 9 9 C 1.52997 * 109.46939 * 259.99735 * 7 6 5 10 10 N 1.46901 * 109.46679 * 139.99939 * 7 6 5 11 11 C 1.46896 * 111.00137 * 204.99923 * 10 7 6 12 12 C 1.53004 * 109.47231 * 179.97438 * 11 10 7 13 13 H 1.09000 * 109.46716 * 60.00491 * 12 11 10 14 14 O 1.42894 * 109.47239 * 300.00299 * 12 11 10 15 15 C 1.53002 * 109.46780 * 180.02562 * 12 11 10 16 16 N 1.46904 * 109.46555 * 185.00263 * 15 12 11 17 17 C 1.46900 * 111.00193 * 66.04712 * 16 15 12 18 18 C 1.46901 * 110.99467 * 189.99908 * 16 15 12 19 19 C 1.50707 * 109.46820 * 169.99949 * 18 16 15 20 20 H 1.08001 * 120.00066 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99892 * 179.97438 * 19 18 16 22 22 N 1.31516 * 119.99995 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99847 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47154 * 60.00228 * 23 21 19 25 25 H 1.48501 * 109.46924 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47217 * 300.00183 * 23 21 19 27 27 C 1.38301 * 120.15851 * 359.95062 * 6 5 4 28 28 C 1.38078 * 120.08143 * 0.04601 * 27 6 5 29 29 H 1.08998 * 109.47528 * 60.00130 * 1 2 3 30 30 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47304 * 300.00002 * 1 2 3 32 32 H 1.08002 * 120.04475 * 0.02806 * 4 3 2 33 33 H 1.07999 * 119.95830 * 180.25063 * 5 4 3 34 34 H 1.09011 * 109.46862 * 180.02562 * 9 7 6 35 35 H 1.09005 * 109.47466 * 300.00060 * 9 7 6 36 36 H 1.09001 * 109.47181 * 60.00572 * 9 7 6 37 37 H 1.00902 * 111.00305 * 81.04571 * 10 7 6 38 38 H 1.08999 * 109.47323 * 300.00221 * 11 10 7 39 39 H 1.09000 * 109.47194 * 59.99846 * 11 10 7 40 40 H 0.96706 * 113.99543 * 299.99423 * 14 12 11 41 41 H 1.08998 * 109.47110 * 304.99779 * 15 12 11 42 42 H 1.08996 * 109.47456 * 65.00468 * 15 12 11 43 43 H 1.08999 * 109.47275 * 59.99750 * 17 16 15 44 44 H 1.09004 * 109.46919 * 179.97438 * 17 16 15 45 45 H 1.08993 * 109.47059 * 299.99598 * 17 16 15 46 46 H 1.08999 * 109.47447 * 289.99734 * 18 16 15 47 47 H 1.08997 * 109.47200 * 50.00037 * 18 16 15 48 48 H 0.96998 * 119.99695 * 179.97438 * 22 21 19 49 49 H 1.08006 * 119.95669 * 180.02562 * 27 6 5 50 50 H 1.08003 * 120.03779 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5387 2.1251 -0.0005 5 6 3.8454 3.4714 -0.0059 6 6 2.8326 4.4132 -0.0048 7 6 3.1716 5.8816 -0.0101 8 1 4.1930 6.0175 -0.3657 9 6 3.0473 6.4388 1.4094 10 7 2.2448 6.5949 -0.8991 11 6 2.8477 7.8366 -1.4014 12 6 1.8551 8.5495 -2.3220 13 1 0.9482 8.7854 -1.7652 14 8 1.5304 7.6983 -3.4228 15 6 2.4835 9.8425 -2.8457 16 7 1.4901 10.5861 -3.6321 17 6 0.3874 11.0530 -2.7812 18 6 2.1159 11.7075 -4.3454 19 6 1.1306 12.2925 -5.3243 20 1 0.1390 11.8730 -5.4084 21 6 1.4952 13.3634 -6.1126 22 7 2.7029 13.8740 -6.0106 23 14 0.2742 14.0881 -7.3264 24 1 -0.9233 14.5729 -6.5941 25 1 0.9062 15.2226 -8.0466 26 1 -0.1313 13.0455 -8.3029 27 6 1.5095 4.0106 0.0005 28 6 1.1952 2.6661 0.0058 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.3302 1.3903 -0.0014 33 1 4.8776 3.7894 -0.0104 34 1 3.2921 7.5010 1.4055 35 1 2.0259 6.3030 1.7649 36 1 3.7351 5.9095 2.0689 37 1 1.3687 6.7806 -0.4342 38 1 3.0958 8.4857 -0.5617 39 1 3.7545 7.6008 -1.9585 40 1 2.2917 7.4474 -3.9638 41 1 2.8123 10.4532 -2.0049 42 1 3.3393 9.6013 -3.4761 43 1 0.7805 11.7091 -2.0045 44 1 -0.3333 11.6007 -3.3885 45 1 -0.1029 10.1962 -2.3192 46 1 2.4142 12.4728 -3.6290 47 1 2.9943 11.3511 -4.8833 48 1 2.9594 14.6272 -6.5654 49 1 0.7211 4.7488 0.0009 50 1 0.1617 2.3525 0.0104 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580065993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:35 Heat of formation + Delta-G solvation = -44.338082 kcal Electronic energy + Delta-G solvation = -26305.391253 eV Core-core repulsion = 22650.570700 eV Total energy + Delta-G solvation = -3654.820553 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48945 -39.46558 -37.67250 -36.57463 -34.61048 -33.06370 -32.10387 -30.87078 -29.96303 -29.49276 -28.82995 -27.22480 -25.38214 -24.44900 -23.51978 -22.58906 -21.92910 -21.35219 -18.74632 -18.55897 -17.67257 -17.09188 -16.81966 -16.65261 -16.43040 -15.94893 -15.77089 -15.71099 -15.39970 -15.09607 -14.84460 -14.78644 -14.66027 -14.42096 -14.09236 -14.06251 -13.82027 -13.60279 -13.42905 -13.21265 -13.12194 -12.91075 -12.69223 -12.56479 -12.54151 -12.43811 -12.39783 -12.16725 -11.97434 -11.79063 -11.60583 -11.39452 -11.17551 -10.65894 -10.61442 -10.45446 -9.89198 -9.30179 -8.94691 -8.32304 -8.20709 -6.30607 0.25575 0.47106 0.61643 1.40889 1.44240 1.49431 1.52171 2.40168 2.69736 2.98556 3.11623 3.45945 3.74618 3.85395 3.89175 3.96002 4.02436 4.14974 4.24849 4.25924 4.29580 4.31339 4.34541 4.44905 4.48759 4.54398 4.59794 4.69857 4.72838 4.77848 4.78671 4.82660 4.88929 4.91404 5.06808 5.11077 5.16414 5.18997 5.21218 5.32124 5.33854 5.39816 5.63824 5.65524 5.98069 6.04567 6.11135 6.32734 6.43682 6.64953 6.85234 7.05635 7.38975 8.89902 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.001716 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.444632 B =16316.349379 C =16941.518790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.157 6.157 3 C -0.099 4.099 4 C -0.112 4.112 5 C -0.103 4.103 6 C -0.074 4.074 7 C 0.126 3.874 8 H 0.089 0.911 9 C -0.173 4.173 10 N -0.676 5.676 11 C 0.039 3.961 12 C 0.130 3.870 13 H 0.091 0.909 14 O -0.554 6.554 15 C 0.024 3.976 16 N -0.541 5.541 17 C 0.040 3.960 18 C 0.208 3.792 19 C -0.525 4.525 20 H 0.061 0.939 21 C 0.001 3.999 22 N -0.934 5.934 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.269 1.269 27 C -0.086 4.086 28 C -0.141 4.141 29 H 0.088 0.912 30 H 0.124 0.876 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.344 0.656 38 H 0.048 0.952 39 H 0.079 0.921 40 H 0.377 0.623 41 H 0.033 0.967 42 H 0.066 0.934 43 H 0.011 0.989 44 H 0.053 0.947 45 H 0.077 0.923 46 H -0.039 1.039 47 H 0.003 0.997 48 H 0.264 0.736 49 H 0.130 0.870 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.451 -25.570 18.383 31.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.085 5.915 3 C -0.212 4.212 4 C -0.135 4.135 5 C -0.123 4.123 6 C -0.077 4.077 7 C 0.016 3.984 8 H 0.107 0.893 9 C -0.232 4.232 10 N -0.307 5.307 11 C -0.091 4.091 12 C 0.069 3.931 13 H 0.109 0.891 14 O -0.359 6.359 15 C -0.105 4.105 16 N -0.265 5.265 17 C -0.108 4.108 18 C 0.081 3.919 19 C -0.563 4.563 20 H 0.079 0.921 21 C -0.197 4.197 22 N -0.574 5.574 23 Si 0.794 3.206 24 H -0.193 1.193 25 H -0.207 1.207 26 H -0.194 1.194 27 C -0.105 4.105 28 C -0.165 4.165 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.111 0.889 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.163 0.837 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.225 0.775 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.030 0.970 44 H 0.072 0.928 45 H 0.096 0.904 46 H -0.021 1.021 47 H 0.021 0.979 48 H 0.073 0.927 49 H 0.148 0.852 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.332 -27.118 17.644 32.354 hybrid contribution -0.134 2.913 0.402 2.944 sum -0.466 -24.205 18.047 30.196 Atomic orbital electron populations 1.23741 0.91917 1.08356 1.06324 1.85492 1.09730 1.03444 1.92851 1.21838 0.97080 0.96618 1.05649 1.20891 0.94474 0.96501 1.01643 1.21143 0.99913 0.91913 0.99339 1.19927 0.93398 0.95072 0.99282 1.20432 0.96947 0.89363 0.91612 0.89325 1.22438 1.02882 1.01275 0.96592 1.60413 1.06324 1.22828 1.41101 1.22541 0.97738 0.90707 0.98070 1.21743 0.97561 0.86776 0.86982 0.89093 1.86552 1.38326 1.68399 1.42641 1.22845 0.95212 0.96125 0.96312 1.61932 1.10783 1.25782 1.27998 1.22230 0.94713 0.98906 0.94957 1.19390 0.93961 0.86590 0.91935 1.21449 0.99763 1.14282 1.20804 0.92117 1.25916 0.97340 0.97178 0.99277 1.70074 1.20397 1.25454 1.41522 0.85436 0.78723 0.77768 0.78690 1.19253 1.20733 1.19441 1.20952 0.96590 0.95135 0.97872 1.21344 0.98754 0.93223 1.03157 0.89320 0.85764 0.88924 0.84927 0.84055 0.92036 0.92052 0.91282 0.83676 0.93367 0.90287 0.77539 0.94928 0.91504 0.97021 0.92765 0.90440 1.02099 0.97850 0.92687 0.85210 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.15 113.37 1.04 -0.22 16 2 S -0.16 -2.50 22.57 -56.49 -1.27 -3.77 16 3 C -0.10 -1.83 6.11 22.62 0.14 -1.69 16 4 C -0.11 -1.97 9.79 22.41 0.22 -1.76 16 5 C -0.10 -1.69 9.66 22.25 0.21 -1.48 16 6 C -0.07 -1.26 4.96 -19.83 -0.10 -1.36 16 7 C 0.13 1.92 2.79 44.17 0.12 2.04 16 8 H 0.09 1.32 7.66 -2.39 -0.02 1.30 16 9 C -0.17 -2.20 9.14 71.98 0.66 -1.54 16 10 N -0.68 -12.13 5.57 -495.45 -2.76 -14.89 16 11 C 0.04 0.77 5.15 86.31 0.44 1.21 16 12 C 0.13 3.40 3.13 30.60 0.10 3.50 16 13 H 0.09 2.41 6.34 -2.39 -0.02 2.40 16 14 O -0.55 -16.75 13.15 -148.98 -1.96 -18.71 16 15 C 0.02 0.81 4.59 86.30 0.40 1.21 16 16 N -0.54 -23.46 4.70 -927.04 -4.36 -27.81 16 17 C 0.04 1.56 9.15 127.69 1.17 2.72 16 18 C 0.21 11.19 4.72 85.56 0.40 11.60 16 19 C -0.52 -30.28 8.46 25.60 0.22 -30.07 16 20 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 21 C 0.00 0.05 5.46 84.65 0.46 0.51 16 22 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 23 Si 0.97 44.80 29.54 68.60 2.03 46.83 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 C -0.09 -1.50 9.31 22.25 0.21 -1.30 16 28 C -0.14 -2.45 9.36 22.41 0.21 -2.24 16 29 H 0.09 0.80 7.76 -2.39 -0.02 0.78 16 30 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.72 7.74 -2.39 -0.02 0.70 16 32 H 0.13 2.02 8.06 -2.91 -0.02 2.00 16 33 H 0.14 1.74 8.03 -2.91 -0.02 1.72 16 34 H 0.06 0.78 7.45 -2.38 -0.02 0.76 16 35 H 0.06 0.77 8.13 -2.38 -0.02 0.75 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.34 5.83 7.81 -89.69 -0.70 5.13 16 38 H 0.05 0.85 7.44 -2.39 -0.02 0.84 16 39 H 0.08 1.52 8.06 -2.39 -0.02 1.50 16 40 H 0.38 9.76 9.04 -74.05 -0.67 9.09 16 41 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 42 H 0.07 2.27 7.93 -2.39 -0.02 2.25 16 43 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 44 H 0.05 2.31 6.76 -2.38 -0.02 2.29 16 45 H 0.08 2.50 6.37 -2.39 -0.02 2.48 16 46 H -0.04 -2.25 8.12 -2.39 -0.02 -2.27 16 47 H 0.00 0.20 7.93 -2.39 -0.02 0.18 16 48 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 49 H 0.13 2.07 7.24 -2.91 -0.02 2.04 16 50 H 0.13 1.84 5.88 -2.91 -0.02 1.83 16 Total: -1.00 -68.97 412.78 -2.58 -71.55 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -0.44 Total: 21.92 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 5.90 Total: -18.84 kcal Atomic # 7 Polarization: -92.14 SS G_CDS: -6.83 Total: -98.97 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -1.96 Total: -18.71 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -1.27 Total: -3.77 kcal Total: -68.97 -2.58 -71.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580065993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.215 kcal (2) G-P(sol) polarization free energy of solvation -68.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds