Wall clock time and date at job start Tue Mar 31 2020 22:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46768 * 2 1 4 4 C 1.52996 * 109.46851 * 239.99838 * 2 1 3 5 5 C 1.53006 * 109.46838 * 174.99815 * 4 2 1 6 6 H 1.08999 * 109.46710 * 55.00521 * 5 4 2 7 7 O 1.42898 * 109.47181 * 294.99861 * 5 4 2 8 8 C 1.50701 * 109.46890 * 175.00241 * 5 4 2 9 9 C 1.38239 * 119.97775 * 84.72870 * 8 5 4 10 10 C 1.38201 * 120.02809 * 179.72231 * 9 8 5 11 11 C 1.38454 * 119.97284 * 0.52778 * 10 9 8 12 12 F 1.35096 * 120.02491 * 179.72426 * 11 10 9 13 13 C 1.38455 * 119.95015 * 359.74683 * 11 10 9 14 14 C 1.38205 * 119.97419 * 359.97438 * 13 11 10 15 15 N 1.46498 * 109.47237 * 120.00160 * 2 1 3 16 16 C 1.34777 * 119.99880 * 274.99933 * 15 2 1 17 17 O 1.21283 * 120.00223 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99993 * 179.97438 * 16 15 2 19 19 H 1.08999 * 109.47018 * 319.99583 * 18 16 15 20 20 N 1.46906 * 109.47187 * 200.00134 * 18 16 15 21 21 C 1.52994 * 109.47012 * 80.00326 * 18 16 15 22 22 C 1.53004 * 109.47238 * 184.99957 * 21 18 16 23 23 C 1.50701 * 109.47146 * 179.97438 * 22 21 18 24 24 H 1.08000 * 120.00163 * 0.02562 * 23 22 21 25 25 C 1.37874 * 119.99659 * 179.97438 * 23 22 21 26 26 N 1.31513 * 119.99938 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 120.00185 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46842 * 89.99970 * 27 25 23 29 29 H 1.48503 * 109.47324 * 209.99799 * 27 25 23 30 30 H 1.48497 * 109.47116 * 330.00021 * 27 25 23 31 31 H 1.09002 * 109.47386 * 59.99872 * 1 2 3 32 32 H 1.09006 * 109.47127 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47266 * 299.99896 * 1 2 3 34 34 H 1.08997 * 109.47591 * 294.99952 * 4 2 1 35 35 H 1.09001 * 109.47215 * 55.00429 * 4 2 1 36 36 H 0.96691 * 114.00377 * 300.00187 * 7 5 4 37 37 H 1.08002 * 119.98413 * 359.97438 * 9 8 5 38 38 H 1.07997 * 120.01288 * 180.25185 * 10 9 8 39 39 H 1.08000 * 120.01803 * 179.97438 * 13 11 10 40 40 H 1.07998 * 119.98914 * 179.97438 * 14 13 11 41 41 H 0.96996 * 120.00036 * 94.99434 * 15 2 1 42 42 H 1.00896 * 111.00309 * 176.04524 * 20 18 16 43 43 H 1.00902 * 110.99923 * 300.00687 * 20 18 16 44 44 H 1.09003 * 109.46995 * 304.99548 * 21 18 16 45 45 H 1.09003 * 109.47429 * 64.99905 * 21 18 16 46 46 H 1.08993 * 109.46824 * 299.99739 * 22 21 18 47 47 H 1.09003 * 109.46953 * 59.99657 * 22 21 18 48 48 H 0.96996 * 120.00577 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3868 7 8 3.9385 0.7549 -1.4881 8 6 4.0773 -1.4259 -2.4748 9 6 4.1116 -0.8745 -3.7420 10 6 4.5867 -1.6168 -4.8065 11 6 5.0182 -2.9169 -4.6054 12 9 5.4776 -3.6454 -5.6462 13 6 4.9781 -3.4701 -3.3368 14 6 4.5080 -2.7239 -2.2727 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1584 2.4117 18 6 2.6489 -0.7288 3.5877 19 1 2.2139 -1.7272 3.6336 20 7 2.2603 0.0300 4.7840 21 6 4.1737 -0.8391 3.5267 22 6 4.6729 -1.6682 4.7118 23 6 6.1747 -1.7773 4.6514 24 1 6.7188 -1.3025 3.8484 25 6 6.8542 -2.4825 5.6220 26 7 8.1648 -2.5774 5.5696 27 14 5.9131 -3.3032 7.0114 28 1 5.5488 -4.6866 6.6129 29 1 6.7639 -3.3464 8.2278 30 1 4.6786 -2.5293 7.2980 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.7516 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 3.5896 1.1582 -2.2947 37 1 3.7708 0.1381 -3.8995 38 1 4.6172 -1.1845 -5.7957 39 1 5.3141 -4.4842 -3.1787 40 1 4.4762 -3.1553 -1.2831 41 1 2.2490 -1.6318 1.1526 42 1 2.5289 -0.4583 5.6251 43 1 2.6514 0.9600 4.7652 44 1 4.4659 -1.3241 2.5953 45 1 4.6122 0.1579 3.5705 46 1 4.3806 -1.1833 5.6432 47 1 4.2344 -2.6652 4.6681 48 1 8.6429 -3.0738 6.2522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000818160899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:41 Heat of formation + Delta-G solvation = -128.215803 kcal Electronic energy + Delta-G solvation = -29251.729620 eV Core-core repulsion = 25027.058681 eV Total energy + Delta-G solvation = -4224.670940 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.19820 -40.28674 -39.57462 -37.54135 -35.93850 -35.22227 -32.80762 -32.14223 -31.47493 -31.07003 -30.31331 -28.40009 -26.82194 -24.53427 -23.84807 -23.39462 -21.59855 -21.20568 -20.47850 -19.92397 -18.26531 -17.57086 -17.22237 -16.86275 -16.64457 -16.15593 -15.91724 -15.80316 -15.10471 -14.86697 -14.67240 -14.51649 -14.24364 -14.21244 -13.92128 -13.59303 -13.45742 -13.37357 -13.19513 -12.86807 -12.77896 -12.68913 -12.43582 -12.19734 -12.01297 -11.79619 -11.58574 -11.41367 -11.32324 -11.03901 -10.97930 -10.37775 -10.34594 -10.08285 -9.89722 -9.48660 -9.37633 -9.31643 -9.09293 -8.86370 -8.62696 -8.30861 -6.11981 -4.11586 0.73253 0.85405 2.91351 3.16319 3.21320 3.23938 3.32764 3.33885 3.88920 4.06275 4.14994 4.32419 4.36971 4.48820 4.61003 4.72439 4.79234 4.86967 4.97028 5.03575 5.06978 5.20875 5.22064 5.27924 5.41954 5.46151 5.47679 5.53942 5.59501 5.61112 5.63718 5.75098 5.85758 5.93466 6.07875 6.12190 6.14673 6.33390 6.49999 6.54897 6.65534 7.09198 7.21011 7.32342 7.33714 7.64349 7.66810 7.78514 8.43732 8.45766 8.92388 9.49200 11.01212 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.003022 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.584865 B = 9264.454592 C =11725.296592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.096 0.904 4 C -0.154 4.154 5 C 0.147 3.853 6 H 0.115 0.885 7 O -0.544 6.544 8 C -0.124 4.124 9 C -0.085 4.085 10 C -0.151 4.151 11 C 0.095 3.905 12 F -0.141 7.141 13 C -0.149 4.149 14 C -0.078 4.078 15 N -0.731 5.731 16 C 0.529 3.471 17 O -0.534 6.534 18 C 0.071 3.929 19 H 0.095 0.905 20 N -0.831 5.831 21 C -0.128 4.128 22 C -0.010 4.010 23 C -0.523 4.523 24 H 0.071 0.929 25 C 0.067 3.933 26 N -0.900 5.900 27 Si 0.881 3.119 28 H -0.277 1.277 29 H -0.288 1.288 30 H -0.265 1.265 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.369 0.631 37 H 0.130 0.870 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.398 0.602 42 H 0.350 0.650 43 H 0.348 0.652 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.013 0.987 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.812 0.463 -20.318 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.114 0.886 4 C -0.192 4.192 5 C 0.087 3.913 6 H 0.133 0.867 7 O -0.349 6.349 8 C -0.125 4.125 9 C -0.103 4.103 10 C -0.170 4.170 11 C 0.076 3.924 12 F -0.119 7.119 13 C -0.167 4.167 14 C -0.096 4.096 15 N -0.384 5.384 16 C 0.315 3.685 17 O -0.409 6.409 18 C -0.045 4.045 19 H 0.113 0.887 20 N -0.363 5.363 21 C -0.168 4.168 22 C -0.048 4.048 23 C -0.561 4.561 24 H 0.090 0.910 25 C -0.134 4.134 26 N -0.539 5.539 27 Si 0.708 3.292 28 H -0.203 1.203 29 H -0.214 1.214 30 H -0.190 1.190 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.217 0.783 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.232 0.768 42 H 0.165 0.835 43 H 0.162 0.838 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.034 0.966 47 H 0.031 0.969 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.299 1.041 -19.909 24.534 hybrid contribution 0.727 -1.194 0.090 1.401 sum -13.572 -0.153 -19.819 24.021 Atomic orbital electron populations 1.22182 0.95390 1.02008 1.02549 1.20837 0.93612 0.98164 0.83298 0.88637 1.22629 0.95574 1.02442 0.98589 1.20888 0.93170 0.81275 0.95927 0.86716 1.86763 1.77206 1.24072 1.46898 1.20693 1.00498 0.95564 0.95718 1.20712 0.98452 0.99700 0.91423 1.21097 1.02057 0.93152 1.00701 1.17762 0.99734 0.90480 0.84434 1.91505 1.86528 1.77177 1.56737 1.21207 1.02569 1.01669 0.91286 1.20956 0.96245 0.93219 0.99206 1.46065 1.68663 1.13939 1.09728 1.20734 0.76176 0.87273 0.84295 1.90641 1.49264 1.16166 1.84832 1.21523 0.96310 0.97342 0.89277 0.88708 1.58737 1.67173 1.07013 1.03371 1.22186 0.91379 1.01781 1.01449 1.19574 0.97561 0.94489 0.93166 1.21069 0.89690 1.33658 1.11718 0.91047 1.25045 0.94751 0.95894 0.97756 1.69909 1.06843 1.41977 1.35165 0.86768 0.80266 0.80128 0.82021 1.20301 1.21358 1.18972 0.91970 0.92590 0.91758 0.90036 0.89894 0.78304 0.85176 0.84685 0.84409 0.84376 0.76806 0.83540 0.83832 0.92039 0.92007 0.96625 0.96860 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.11 16 2 C 0.15 1.42 2.53 -67.93 -0.17 1.24 16 3 H 0.10 1.18 7.13 -51.93 -0.37 0.81 16 4 C -0.15 -1.06 4.41 -26.73 -0.12 -1.18 16 5 C 0.15 1.27 3.15 -27.88 -0.09 1.18 16 6 H 0.12 1.19 7.53 -51.93 -0.39 0.80 16 7 O -0.54 -5.43 12.59 -35.23 -0.44 -5.87 16 8 C -0.12 -1.03 5.00 -104.62 -0.52 -1.56 16 9 C -0.08 -0.62 9.32 -39.59 -0.37 -0.99 16 10 C -0.15 -1.20 10.03 -39.52 -0.40 -1.60 16 11 C 0.10 0.89 7.30 -39.42 -0.29 0.61 16 12 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 13 C -0.15 -1.32 10.03 -39.51 -0.40 -1.71 16 14 C -0.08 -0.67 9.68 -39.59 -0.38 -1.05 16 15 N -0.73 -8.20 4.45 -53.81 -0.24 -8.44 16 16 C 0.53 8.05 7.04 -10.98 -0.08 7.97 16 17 O -0.53 -9.90 15.91 5.56 0.09 -9.81 16 18 C 0.07 1.10 3.21 -68.86 -0.22 0.88 16 19 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 20 N -0.83 -13.28 8.94 -5.65 -0.05 -13.33 16 21 C -0.13 -2.35 4.78 -26.73 -0.13 -2.48 16 22 C -0.01 -0.23 3.81 -27.88 -0.11 -0.34 16 23 C -0.52 -14.36 9.66 -34.44 -0.33 -14.69 16 24 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 25 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 26 N -0.90 -27.23 13.96 55.43 0.77 -26.46 16 27 Si 0.88 20.92 27.47 -169.99 -4.67 16.25 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 29 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 30 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.37 2.14 7.39 45.56 0.34 2.48 16 37 H 0.13 0.60 6.62 -52.49 -0.35 0.26 16 38 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.40 3.59 8.60 -40.82 -0.35 3.24 16 42 H 0.35 5.45 7.55 -39.29 -0.30 5.15 16 43 H 0.35 5.74 8.58 -39.29 -0.34 5.40 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.02 0.34 5.92 -51.93 -0.31 0.03 16 47 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 48 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 398.75 15.07 6.01 6.01 Total: -1.00 -34.30 398.75 -8.53 -42.83 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -6.69 Total: 13.24 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.34 Total: -13.01 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 0.48 Total: -48.22 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.36 Total: -15.68 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.67 Total: 16.25 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.30 -8.53 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818160899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.381 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds