Wall clock time and date at job start Tue Mar 31 2020 22:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46768 * 2 1 4 4 C 1.52996 * 109.46851 * 239.99838 * 2 1 3 5 5 C 1.53006 * 109.46838 * 174.99815 * 4 2 1 6 6 H 1.08999 * 109.46710 * 55.00521 * 5 4 2 7 7 O 1.42898 * 109.47181 * 294.99861 * 5 4 2 8 8 C 1.50701 * 109.46890 * 175.00241 * 5 4 2 9 9 C 1.38239 * 119.97775 * 84.72870 * 8 5 4 10 10 C 1.38201 * 120.02809 * 179.72231 * 9 8 5 11 11 C 1.38454 * 119.97284 * 0.52778 * 10 9 8 12 12 F 1.35096 * 120.02491 * 179.72426 * 11 10 9 13 13 C 1.38455 * 119.95015 * 359.74683 * 11 10 9 14 14 C 1.38205 * 119.97419 * 359.97438 * 13 11 10 15 15 N 1.46498 * 109.47237 * 120.00160 * 2 1 3 16 16 C 1.34777 * 119.99880 * 274.99933 * 15 2 1 17 17 O 1.21283 * 120.00223 * 0.02562 * 16 15 2 18 18 C 1.50701 * 119.99993 * 179.97438 * 16 15 2 19 19 H 1.08999 * 109.47018 * 319.99583 * 18 16 15 20 20 N 1.46906 * 109.47187 * 200.00134 * 18 16 15 21 21 C 1.52994 * 109.47012 * 80.00326 * 18 16 15 22 22 C 1.53004 * 109.47238 * 184.99957 * 21 18 16 23 23 C 1.50701 * 109.47146 * 179.97438 * 22 21 18 24 24 H 1.08000 * 120.00163 * 0.02562 * 23 22 21 25 25 C 1.37874 * 119.99659 * 179.97438 * 23 22 21 26 26 N 1.31513 * 119.99938 * 180.02562 * 25 23 22 27 27 Si 1.86802 * 120.00185 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.46842 * 89.99970 * 27 25 23 29 29 H 1.48503 * 109.47324 * 209.99799 * 27 25 23 30 30 H 1.48497 * 109.47116 * 330.00021 * 27 25 23 31 31 H 1.09002 * 109.47386 * 59.99872 * 1 2 3 32 32 H 1.09006 * 109.47127 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47266 * 299.99896 * 1 2 3 34 34 H 1.08997 * 109.47591 * 294.99952 * 4 2 1 35 35 H 1.09001 * 109.47215 * 55.00429 * 4 2 1 36 36 H 0.96691 * 114.00377 * 300.00187 * 7 5 4 37 37 H 1.08002 * 119.98413 * 359.97438 * 9 8 5 38 38 H 1.07997 * 120.01288 * 180.25185 * 10 9 8 39 39 H 1.08000 * 120.01803 * 179.97438 * 13 11 10 40 40 H 1.07998 * 119.98914 * 179.97438 * 14 13 11 41 41 H 0.96996 * 120.00036 * 94.99434 * 15 2 1 42 42 H 1.00896 * 111.00309 * 176.04524 * 20 18 16 43 43 H 1.00902 * 110.99923 * 300.00687 * 20 18 16 44 44 H 1.09003 * 109.46995 * 304.99548 * 21 18 16 45 45 H 1.09003 * 109.47429 * 64.99905 * 21 18 16 46 46 H 1.08993 * 109.46824 * 299.99739 * 22 21 18 47 47 H 1.09003 * 109.46953 * 59.99657 * 22 21 18 48 48 H 0.96996 * 120.00577 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 1 3.9954 -0.9923 -0.3868 7 8 3.9385 0.7549 -1.4881 8 6 4.0773 -1.4259 -2.4748 9 6 4.1116 -0.8745 -3.7420 10 6 4.5867 -1.6168 -4.8065 11 6 5.0182 -2.9169 -4.6054 12 9 5.4776 -3.6454 -5.6462 13 6 4.9781 -3.4701 -3.3368 14 6 4.5080 -2.7239 -2.2727 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8583 1.1584 2.4117 18 6 2.6489 -0.7288 3.5877 19 1 2.2139 -1.7272 3.6336 20 7 2.2603 0.0300 4.7840 21 6 4.1737 -0.8391 3.5267 22 6 4.6729 -1.6682 4.7118 23 6 6.1747 -1.7773 4.6514 24 1 6.7188 -1.3025 3.8484 25 6 6.8542 -2.4825 5.6220 26 7 8.1648 -2.5774 5.5696 27 14 5.9131 -3.3032 7.0114 28 1 5.5488 -4.6866 6.6129 29 1 6.7639 -3.3464 8.2278 30 1 4.6786 -2.5293 7.2980 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.7516 -1.7715 -1.2056 35 1 1.6054 -0.2617 -2.1369 36 1 3.5896 1.1582 -2.2947 37 1 3.7708 0.1381 -3.8995 38 1 4.6172 -1.1845 -5.7957 39 1 5.3141 -4.4842 -3.1787 40 1 4.4762 -3.1553 -1.2831 41 1 2.2490 -1.6318 1.1526 42 1 2.5289 -0.4583 5.6251 43 1 2.6514 0.9600 4.7652 44 1 4.4659 -1.3241 2.5953 45 1 4.6122 0.1579 3.5705 46 1 4.3806 -1.1833 5.6432 47 1 4.2344 -2.6652 4.6681 48 1 8.6429 -3.0738 6.2522 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000818160899.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:40 Heat of formation + Delta-G solvation = -154.165495 kcal Electronic energy + Delta-G solvation = -29252.854884 eV Core-core repulsion = 25027.058681 eV Total energy + Delta-G solvation = -4225.796203 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.92806 -41.17829 -40.47326 -38.32104 -37.17751 -36.33914 -34.79132 -32.92964 -32.12622 -32.05661 -31.84972 -29.06286 -28.34656 -25.70323 -24.94648 -24.03048 -22.57260 -22.15770 -21.67560 -21.18178 -19.15015 -18.89862 -18.36891 -17.98964 -17.52256 -17.10431 -16.64110 -16.50563 -16.26827 -16.05544 -15.86153 -15.70087 -15.44738 -15.36384 -14.90790 -14.67611 -14.51702 -14.27188 -14.23481 -14.03814 -13.85249 -13.58132 -13.47619 -13.22276 -13.04219 -12.81713 -12.72315 -12.63248 -12.25985 -12.07331 -11.94497 -11.84468 -11.76290 -11.67106 -11.39330 -11.06567 -10.76286 -10.68687 -10.09650 -10.06039 -9.63155 -9.55267 -8.28730 -6.34248 0.07786 0.24581 1.38363 1.41153 1.52058 1.70574 2.22603 2.37028 2.53375 3.06883 3.24518 3.40722 3.54265 3.74273 3.75711 3.83951 3.88403 3.98295 4.11478 4.13252 4.16243 4.22635 4.30085 4.38303 4.54219 4.55236 4.61612 4.75024 4.83012 4.85460 4.91841 4.96313 4.96725 5.03102 5.13635 5.18231 5.23253 5.34867 5.38466 5.48004 5.49759 5.63078 5.64642 5.87772 6.08945 6.26564 6.49782 6.62689 6.74558 6.82891 7.30586 7.34449 8.88083 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008868 B = 0.003022 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3156.584865 B = 9264.454592 C =11725.296592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 H 0.068 0.932 4 C -0.140 4.140 5 C 0.150 3.850 6 H 0.093 0.907 7 O -0.569 6.569 8 C -0.127 4.127 9 C -0.083 4.083 10 C -0.153 4.153 11 C 0.074 3.926 12 F -0.151 7.151 13 C -0.159 4.159 14 C -0.089 4.089 15 N -0.715 5.715 16 C 0.526 3.474 17 O -0.572 6.572 18 C 0.079 3.921 19 H 0.120 0.880 20 N -0.831 5.831 21 C -0.116 4.116 22 C -0.006 4.006 23 C -0.533 4.533 24 H 0.025 0.975 25 C 0.002 3.998 26 N -0.953 5.953 27 Si 0.954 3.046 28 H -0.264 1.264 29 H -0.291 1.291 30 H -0.238 1.238 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.034 0.966 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.387 0.613 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.411 0.589 42 H 0.353 0.647 43 H 0.344 0.656 44 H 0.065 0.935 45 H 0.037 0.963 46 H 0.023 0.977 47 H 0.032 0.968 48 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.543 -0.388 -20.796 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.087 0.913 4 C -0.178 4.178 5 C 0.090 3.910 6 H 0.111 0.889 7 O -0.377 6.377 8 C -0.127 4.127 9 C -0.100 4.100 10 C -0.171 4.171 11 C 0.055 3.945 12 F -0.130 7.130 13 C -0.177 4.177 14 C -0.107 4.107 15 N -0.368 5.368 16 C 0.313 3.687 17 O -0.451 6.451 18 C -0.037 4.037 19 H 0.138 0.862 20 N -0.362 5.362 21 C -0.156 4.156 22 C -0.043 4.043 23 C -0.571 4.571 24 H 0.043 0.957 25 C -0.195 4.195 26 N -0.594 5.594 27 Si 0.777 3.223 28 H -0.188 1.188 29 H -0.217 1.217 30 H -0.161 1.161 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.237 0.763 37 H 0.177 0.823 38 H 0.171 0.829 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.247 0.753 42 H 0.168 0.832 43 H 0.157 0.843 44 H 0.084 0.916 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.050 0.950 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.058 0.168 -20.436 26.620 hybrid contribution 1.662 -0.861 0.134 1.877 sum -15.395 -0.694 -20.302 25.488 Atomic orbital electron populations 1.22122 0.94336 1.02853 1.02180 1.20937 0.94331 0.97066 0.83656 0.91332 1.22552 0.94085 1.03306 0.97877 1.20781 0.94230 0.80794 0.95146 0.88938 1.86726 1.77859 1.24775 1.48345 1.20724 1.00603 0.95354 0.96051 1.21031 0.97563 1.00804 0.90639 1.21360 1.01336 0.92558 1.01857 1.18052 1.00755 0.91302 0.84427 1.91475 1.86821 1.77538 1.57143 1.21349 1.02830 1.02202 0.91365 1.21119 0.96474 0.93630 0.99490 1.45995 1.67138 1.14503 1.09145 1.20679 0.76115 0.86792 0.85163 1.90628 1.51280 1.17689 1.85477 1.21480 0.93928 0.98654 0.89596 0.86215 1.58762 1.66925 1.06879 1.03675 1.21995 0.93641 0.99725 1.00256 1.19502 0.93801 0.96090 0.94927 1.21439 0.92670 1.32725 1.10294 0.95661 1.26084 0.95635 0.96765 1.00986 1.70084 1.09087 1.43590 1.36634 0.85607 0.79443 0.79603 0.77664 1.18848 1.21731 1.16146 0.89855 0.91057 0.94653 0.88314 0.87345 0.76297 0.82325 0.82901 0.83829 0.83695 0.75267 0.83185 0.84341 0.91644 0.94449 0.95846 0.94996 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.48 71.98 0.68 -1.77 16 2 C 0.14 2.55 2.53 44.99 0.11 2.66 16 3 H 0.07 1.64 7.13 -2.39 -0.02 1.63 16 4 C -0.14 -1.53 4.41 30.60 0.14 -1.40 16 5 C 0.15 2.36 3.15 29.85 0.09 2.46 16 6 H 0.09 1.86 7.53 -2.39 -0.02 1.85 16 7 O -0.57 -10.65 12.59 -148.98 -1.88 -12.53 16 8 C -0.13 -1.90 5.00 -19.86 -0.10 -1.99 16 9 C -0.08 -1.01 9.32 22.26 0.21 -0.80 16 10 C -0.15 -2.16 10.03 22.31 0.22 -1.93 16 11 C 0.07 1.34 7.30 22.37 0.16 1.50 16 12 F -0.15 -3.09 17.27 44.97 0.78 -2.31 16 13 C -0.16 -2.74 10.03 22.31 0.22 -2.52 16 14 C -0.09 -1.45 9.68 22.26 0.22 -1.23 16 15 N -0.71 -14.92 4.45 -442.53 -1.97 -16.89 16 16 C 0.53 15.55 7.04 87.66 0.62 16.17 16 17 O -0.57 -21.24 15.91 -3.04 -0.05 -21.29 16 18 C 0.08 2.31 3.21 44.17 0.14 2.45 16 19 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 20 N -0.83 -25.32 8.94 -171.80 -1.54 -26.86 16 21 C -0.12 -4.21 4.78 30.59 0.15 -4.06 16 22 C -0.01 -0.24 3.81 29.85 0.11 -0.13 16 23 C -0.53 -29.76 9.66 25.60 0.25 -29.52 16 24 H 0.02 1.58 7.99 -2.91 -0.02 1.56 16 25 C 0.00 0.11 5.47 84.65 0.46 0.57 16 26 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 27 Si 0.95 42.29 27.47 68.60 1.88 44.17 16 28 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 30 H -0.24 -9.47 6.54 99.48 0.65 -8.82 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.39 3.65 7.39 -74.06 -0.55 3.11 16 37 H 0.16 0.93 6.62 -2.91 -0.02 0.91 16 38 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 39 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 40 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.41 6.46 8.60 -92.71 -0.80 5.66 16 42 H 0.35 10.19 7.55 -89.70 -0.68 9.52 16 43 H 0.34 11.16 8.58 -89.69 -0.77 10.39 16 44 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.02 0.97 5.92 -2.39 -0.01 0.96 16 47 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 48 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -77.23 398.75 -0.61 -77.84 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: -1.83 Total: 36.34 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 3.69 Total: -19.54 kcal Atomic # 7 Polarization: -99.48 SS G_CDS: -3.20 Total: -102.68 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.92 Total: -33.82 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.78 Total: -2.31 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 1.88 Total: 44.17 kcal Total: -77.23 -0.61 -77.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000818160899.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.322 kcal (2) G-P(sol) polarization free energy of solvation -77.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds