Wall clock time and date at job start Tue Mar 31 2020 20:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46830 * 2 1 4 4 C 1.50693 * 109.47304 * 239.99990 * 2 1 3 5 5 H 1.08001 * 119.99812 * 240.00067 * 4 2 1 6 6 C 1.37876 * 120.00352 * 60.00020 * 4 2 1 7 7 N 1.31515 * 119.99820 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00380 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47501 * 59.99693 * 8 6 4 10 10 H 1.48508 * 109.47239 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46821 * 299.99753 * 8 6 4 12 12 C 1.53003 * 109.46976 * 119.99699 * 2 1 3 13 13 N 1.46503 * 109.47227 * 300.00346 * 12 2 1 14 14 C 1.34773 * 119.99832 * 180.02562 * 13 12 2 15 15 O 1.21582 * 119.99930 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99952 * 179.97438 * 14 13 12 17 17 C 1.46495 * 119.99938 * 179.97438 * 16 14 13 18 18 C 1.53009 * 109.47016 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.47203 * 59.99965 * 18 17 16 20 20 O 1.42903 * 109.46781 * 300.00142 * 18 17 16 21 21 C 1.50699 * 109.46938 * 180.02562 * 18 17 16 22 22 C 1.38249 * 119.97548 * 330.23210 * 21 18 17 23 23 C 1.38194 * 120.02368 * 180.28387 * 22 21 18 24 24 C 1.38460 * 119.97497 * 359.45988 * 23 22 21 25 25 F 1.35105 * 120.02800 * 180.30394 * 24 23 22 26 26 C 1.38467 * 119.94896 * 0.28520 * 24 23 22 27 27 C 1.38197 * 119.97188 * 359.97438 * 26 24 23 28 28 H 1.09000 * 109.47740 * 300.00112 * 1 2 3 29 29 H 1.09003 * 109.47385 * 59.99773 * 1 2 3 30 30 H 1.09000 * 109.47459 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46852 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.47215 * 299.99596 * 3 2 1 33 33 H 1.09004 * 109.47341 * 60.00160 * 3 2 1 34 34 H 0.97001 * 120.00533 * 180.02562 * 7 6 4 35 35 H 1.09000 * 109.46805 * 180.02562 * 12 2 1 36 36 H 1.08995 * 109.47037 * 60.00292 * 12 2 1 37 37 H 0.97006 * 119.99611 * 359.97438 * 13 12 2 38 38 H 0.97001 * 119.99660 * 0.02562 * 16 14 13 39 39 H 1.08992 * 109.47356 * 60.00517 * 17 16 14 40 40 H 1.09002 * 109.47385 * 299.99573 * 17 16 14 41 41 H 1.08994 * 109.47397 * 180.02562 * 19 18 17 42 42 H 1.08999 * 109.47273 * 300.00403 * 19 18 17 43 43 H 1.08999 * 109.47070 * 59.99754 * 19 18 17 44 44 H 0.96698 * 114.00047 * 299.99786 * 20 18 17 45 45 H 1.07998 * 119.98587 * 0.04571 * 22 21 18 46 46 H 1.08002 * 120.01531 * 179.74540 * 23 22 21 47 47 H 1.07998 * 120.01314 * 180.02562 * 26 24 23 48 48 H 1.07994 * 119.98607 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1203 -4.0078 9 1 1.8260 -2.5203 -4.0077 10 1 1.8260 -0.4206 -5.2204 11 1 3.8064 -1.1208 -4.0080 12 6 2.0399 -0.7212 1.2493 13 7 1.5515 -0.0306 2.4455 14 6 1.8775 -0.4907 3.6696 15 8 2.5766 -1.4792 3.7811 16 7 1.4286 0.1449 4.7700 17 6 1.7825 -0.3556 6.1006 18 6 1.1492 0.5399 7.1674 19 6 -0.3722 0.5278 7.0059 20 8 1.6336 1.8759 7.0165 21 6 1.5138 0.0254 8.5361 22 6 1.7408 -1.3246 8.7286 23 6 2.0695 -1.7983 9.9846 24 6 2.1823 -0.9188 11.0480 25 9 2.5096 -1.3799 12.2750 26 6 1.9598 0.4339 10.8528 27 6 1.6261 0.9046 9.5971 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1299 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.7081 1.1608 -3.4844 35 1 3.1299 -0.7208 1.2495 36 1 1.6766 -1.7488 1.2493 37 1 0.9941 0.7583 2.3564 38 1 0.8706 0.9333 4.6809 39 1 2.8663 -0.3472 6.2155 40 1 1.4127 -1.3744 6.2158 41 1 -0.8233 1.1660 7.7656 42 1 -0.6355 0.9001 6.0159 43 1 -0.7416 -0.4913 7.1209 44 1 2.5927 1.9591 7.1069 45 1 1.6575 -2.0098 7.8980 46 1 2.2428 -2.8536 10.1357 47 1 2.0480 1.1209 11.6814 48 1 1.4529 1.9596 9.4445 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838753787.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:38 Heat of formation + Delta-G solvation = -126.497757 kcal Electronic energy + Delta-G solvation = -29081.211559 eV Core-core repulsion = 24856.615119 eV Total energy + Delta-G solvation = -4224.596440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.92894 -41.38854 -40.56584 -38.48968 -37.94587 -35.32331 -34.93800 -33.25752 -32.45211 -32.07799 -30.02205 -28.05782 -27.52965 -27.31487 -26.15238 -24.21488 -23.72560 -21.96152 -21.40933 -20.55548 -19.63000 -18.89620 -18.32973 -17.75382 -17.32789 -16.93532 -16.72008 -16.61550 -16.60108 -16.10520 -15.77340 -15.48291 -15.16163 -15.02705 -14.70668 -14.64817 -14.43836 -14.14265 -13.96808 -13.93454 -13.52008 -13.30929 -13.19573 -13.10021 -13.06101 -12.76719 -12.63752 -12.60388 -12.22127 -12.14730 -12.11562 -11.80652 -11.45050 -11.38245 -11.21185 -11.05962 -10.68183 -10.38371 -10.27018 -10.09741 -9.64366 -9.62216 -7.99777 -6.15161 0.05044 0.24454 1.45759 1.46806 1.53226 1.80290 2.23910 2.48004 2.53226 3.16715 3.23675 3.26342 3.38233 3.54653 3.66051 3.85332 3.93601 3.99801 4.29789 4.40705 4.45321 4.56812 4.61437 4.69422 4.75089 4.80652 4.90490 4.96408 5.00647 5.03612 5.09516 5.13883 5.14490 5.22062 5.23599 5.26929 5.41526 5.43742 5.52852 5.66569 5.69746 5.70540 5.86731 6.09534 6.18430 6.25185 6.46502 6.71307 6.88971 7.19028 7.52192 7.67016 8.98854 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031623 B = 0.001897 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.222575 B =14759.922646 C =15217.113959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.527 4.527 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.697 3.303 15 O -0.642 6.642 16 N -0.726 5.726 17 C 0.115 3.885 18 C 0.181 3.819 19 C -0.139 4.139 20 O -0.552 6.552 21 C -0.125 4.125 22 C -0.087 4.087 23 C -0.158 4.158 24 C 0.081 3.919 25 F -0.150 7.150 26 C -0.155 4.155 27 C -0.067 4.067 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.260 0.740 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.405 0.595 38 H 0.410 0.590 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.392 0.608 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.152 0.848 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 3.252 26.523 26.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.173 4.173 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.044 3.956 13 N -0.381 5.381 14 C 0.396 3.604 15 O -0.524 6.524 16 N -0.383 5.383 17 C -0.010 4.010 18 C 0.140 3.860 19 C -0.196 4.196 20 O -0.360 6.360 21 C -0.127 4.127 22 C -0.105 4.105 23 C -0.177 4.177 24 C 0.062 3.938 25 F -0.129 7.129 26 C -0.173 4.173 27 C -0.085 4.085 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.241 0.759 38 H 0.247 0.753 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.242 0.758 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.170 0.830 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.426 2.589 26.428 26.665 hybrid contribution 0.717 -0.333 -0.808 1.131 sum -1.709 2.256 25.620 25.776 Atomic orbital electron populations 1.21653 0.97059 0.98624 1.00349 1.18364 0.93309 0.93042 0.90251 1.21656 0.97852 0.97853 1.00336 1.21235 1.31681 1.12153 0.91538 0.93733 1.25452 0.95218 0.95641 1.00945 1.69899 1.36932 1.23275 1.23612 0.85829 0.78602 0.78813 0.79617 1.20292 1.20883 1.20308 1.21106 0.96633 0.94658 0.83236 1.45192 1.55821 1.33179 1.03931 1.16171 0.80209 0.82666 0.81321 1.90858 1.45055 1.29792 1.86741 1.44790 1.56674 1.33132 1.03751 1.21978 0.99986 0.98341 0.80681 1.19971 0.95651 0.82079 0.88309 1.21816 0.90713 1.03574 1.03515 1.86546 1.29045 1.25794 1.94610 1.20424 1.02088 0.94054 0.96092 1.21178 0.96956 0.95506 0.96867 1.21330 1.03147 1.00970 0.92218 1.18059 1.01946 0.93625 0.80189 1.91485 1.90283 1.89623 1.41477 1.21385 1.02674 0.93602 0.99682 1.21008 0.96006 1.01169 0.90329 0.94424 0.91958 0.96356 0.96411 0.91949 0.94453 0.93059 0.94726 0.94626 0.75858 0.75278 0.91929 0.90839 0.90620 0.91205 0.90245 0.75817 0.83966 0.83627 0.83022 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 4 C -0.53 -27.78 8.01 25.60 0.21 -27.58 16 5 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 6 C 0.03 1.43 5.15 84.65 0.44 1.86 16 7 N -0.90 -47.63 9.35 21.45 0.20 -47.43 16 8 Si 0.94 42.50 29.54 68.60 2.03 44.52 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 12 C 0.17 7.16 4.50 86.38 0.39 7.55 16 13 N -0.73 -24.72 4.96 -478.54 -2.37 -27.09 16 14 C 0.70 23.26 8.57 179.05 1.53 24.79 16 15 O -0.64 -27.02 16.34 -3.97 -0.06 -27.09 16 16 N -0.73 -16.51 5.15 -478.54 -2.47 -18.97 16 17 C 0.11 2.16 4.08 86.38 0.35 2.51 16 18 C 0.18 2.39 0.88 -11.54 -0.01 2.38 16 19 C -0.14 -1.73 8.65 71.98 0.62 -1.11 16 20 O -0.55 -6.93 11.71 -148.98 -1.74 -8.67 16 21 C -0.13 -1.61 4.81 -19.86 -0.10 -1.70 16 22 C -0.09 -1.21 9.14 22.26 0.20 -1.00 16 23 C -0.16 -2.29 10.03 22.31 0.22 -2.07 16 24 C 0.08 1.27 7.30 22.38 0.16 1.43 16 25 F -0.15 -2.71 17.27 44.97 0.78 -1.93 16 26 C -0.15 -1.93 10.03 22.31 0.22 -1.71 16 27 C -0.07 -0.76 9.34 22.26 0.21 -0.55 16 28 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 29 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 33 H 0.04 1.36 6.86 -2.38 -0.02 1.35 16 34 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.40 11.90 6.18 -92.70 -0.57 11.32 16 38 H 0.41 7.54 7.21 -92.71 -0.67 6.87 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.45 6.51 -2.39 -0.02 1.43 16 41 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.07 0.90 6.86 -2.39 -0.02 0.88 16 43 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.39 3.23 9.04 -74.06 -0.67 2.56 16 45 H 0.14 1.83 6.16 -2.91 -0.02 1.82 16 46 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 47 H 0.15 1.34 8.06 -2.91 -0.02 1.31 16 48 H 0.16 1.30 7.48 -2.91 -0.02 1.28 16 Total: -1.00 -64.44 387.25 1.05 -63.39 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.90 Total: 25.46 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 5.59 Total: -2.18 kcal Atomic # 7 Polarization: -88.86 SS G_CDS: -4.64 Total: -93.50 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.81 Total: -35.76 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.52 kcal Total: -64.44 1.05 -63.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753787.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.108 kcal (2) G-P(sol) polarization free energy of solvation -64.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds