Wall clock time and date at job start Tue Mar 31 2020 20:46:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46830 * 2 1 4 4 C 1.50700 * 109.47465 * 239.99786 * 2 1 3 5 5 H 1.07991 * 119.99829 * 240.00000 * 4 2 1 6 6 C 1.37882 * 119.99551 * 59.99681 * 4 2 1 7 7 N 1.31515 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99567 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47100 * 59.99717 * 8 6 4 10 10 H 1.48501 * 109.46778 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46838 * 299.99800 * 8 6 4 12 12 C 1.53004 * 109.47418 * 119.99518 * 2 1 3 13 13 N 1.46501 * 109.46881 * 300.00672 * 12 2 1 14 14 C 1.34775 * 119.99754 * 180.02562 * 13 12 2 15 15 O 1.21593 * 120.00069 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99982 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99766 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46741 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47115 * 304.99999 * 18 17 16 20 20 O 1.42905 * 109.46717 * 65.00352 * 18 17 16 21 21 C 1.50699 * 109.46893 * 184.99870 * 18 17 16 22 22 C 1.38247 * 119.97465 * 29.73093 * 21 18 17 23 23 C 1.38190 * 120.02973 * 180.27547 * 22 21 18 24 24 C 1.38466 * 119.97055 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.02197 * 179.97438 * 24 23 22 26 26 C 1.38454 * 119.94878 * 0.02562 * 24 23 22 27 27 C 1.38192 * 119.97677 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47334 * 299.99838 * 1 2 3 29 29 H 1.08994 * 109.47537 * 60.00185 * 1 2 3 30 30 H 1.09006 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47128 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46879 * 299.99683 * 3 2 1 33 33 H 1.08995 * 109.47711 * 60.00130 * 3 2 1 34 34 H 0.97000 * 119.99493 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47177 * 179.97438 * 12 2 1 36 36 H 1.09004 * 109.46377 * 60.00003 * 12 2 1 37 37 H 0.96999 * 120.00298 * 359.97438 * 13 12 2 38 38 H 0.96994 * 119.99955 * 359.97438 * 16 14 13 39 39 H 1.09002 * 109.46827 * 59.99880 * 17 16 14 40 40 H 1.08999 * 109.46992 * 300.00072 * 17 16 14 41 41 H 1.08992 * 109.47504 * 299.99784 * 19 18 17 42 42 H 1.09004 * 109.47083 * 60.00893 * 19 18 17 43 43 H 1.09008 * 109.46814 * 179.97438 * 19 18 17 44 44 H 0.96696 * 113.99932 * 60.00086 * 20 18 17 45 45 H 1.08003 * 119.98380 * 0.24954 * 22 21 18 46 46 H 1.08005 * 120.01789 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.01228 * 179.97438 * 26 24 23 48 48 H 1.07998 * 119.99239 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8260 -2.5204 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8776 -0.4906 3.6695 15 8 2.5768 -1.4791 3.7812 16 7 1.4287 0.1451 4.7700 17 6 1.7827 -0.3554 6.1006 18 6 1.1504 0.5409 7.1673 19 6 1.5720 1.9922 6.9293 20 8 -0.2730 0.4397 7.0917 21 6 1.6135 0.1006 8.5322 22 6 2.8570 -0.4840 8.6843 23 6 3.2805 -0.8933 9.9344 24 6 2.4589 -0.7173 11.0350 25 9 2.8716 -1.1176 12.2575 26 6 1.2137 -0.1317 10.8814 27 6 0.7920 0.2759 9.6301 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.7094 1.1617 -3.4844 35 1 3.1300 -0.7215 1.2490 36 1 1.6767 -1.7488 1.2493 37 1 0.9941 0.7583 2.3564 38 1 0.8713 0.9339 4.6809 39 1 2.8666 -0.3470 6.2154 40 1 1.4130 -1.3743 6.2158 41 1 2.6576 2.0694 6.9870 42 1 1.2369 2.3107 5.9422 43 1 1.1211 2.6308 7.6891 44 1 -0.6118 -0.4549 7.2332 45 1 3.4976 -0.6212 7.8257 46 1 4.2522 -1.3496 10.0531 47 1 0.5719 0.0057 11.7391 48 1 -0.1794 0.7323 9.5100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838753788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:43 Heat of formation + Delta-G solvation = -105.580113 kcal Electronic energy + Delta-G solvation = -29084.016059 eV Core-core repulsion = 24860.326677 eV Total energy + Delta-G solvation = -4223.689382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.27900 -40.55867 -39.40949 -37.63309 -36.39270 -34.32310 -33.25719 -32.34351 -31.53002 -30.75476 -29.37485 -27.05222 -25.70760 -25.47006 -24.60706 -23.61167 -23.02287 -20.75419 -20.61700 -18.78469 -18.37304 -18.22547 -17.63831 -16.66424 -16.02279 -15.84422 -15.82095 -15.61161 -15.27075 -14.85772 -14.71674 -14.60466 -14.15727 -13.85730 -13.61417 -13.44852 -13.35119 -13.04608 -12.83861 -12.76612 -12.67344 -12.38894 -12.16455 -12.12240 -11.56632 -11.35305 -11.20531 -11.17639 -10.83474 -10.72116 -10.51697 -10.36662 -10.20186 -9.80894 -9.61349 -9.55130 -9.29894 -9.04317 -9.00856 -8.78431 -8.39979 -8.18395 -6.00799 -4.10690 0.63901 0.79143 2.99469 3.10999 3.30997 3.35184 3.39181 3.61955 3.78384 3.84566 4.12250 4.23638 4.40020 4.43638 4.47448 4.66076 4.75854 4.84783 4.96773 5.25834 5.31506 5.32518 5.46467 5.48906 5.56493 5.61397 5.70905 5.78793 5.83737 6.00530 6.22063 6.37753 6.42655 6.51801 6.58967 6.80989 6.84659 6.92087 7.04681 7.10668 7.21080 7.31120 7.42430 7.57594 7.71081 8.02747 8.13963 8.39493 8.48405 8.88839 9.03823 9.54842 11.00542 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.001898 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.566627 B =14747.063702 C =15207.616674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.697 3.303 15 O -0.602 6.602 16 N -0.748 5.748 17 C 0.118 3.882 18 C 0.166 3.834 19 C -0.136 4.136 20 O -0.548 6.548 21 C -0.125 4.125 22 C -0.081 4.081 23 C -0.152 4.152 24 C 0.099 3.901 25 F -0.141 7.141 26 C -0.156 4.156 27 C -0.071 4.071 28 H 0.006 0.994 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.006 0.994 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.394 0.606 38 H 0.397 0.603 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.381 0.619 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.136 0.864 48 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.263 2.599 25.340 25.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.397 3.603 15 O -0.481 6.481 16 N -0.406 5.406 17 C -0.008 4.008 18 C 0.125 3.875 19 C -0.193 4.193 20 O -0.354 6.354 21 C -0.127 4.127 22 C -0.099 4.099 23 C -0.171 4.171 24 C 0.080 3.920 25 F -0.119 7.119 26 C -0.174 4.174 27 C -0.089 4.089 28 H 0.025 0.975 29 H 0.103 0.897 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.103 0.897 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.232 0.768 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.230 0.770 45 H 0.158 0.842 46 H 0.156 0.844 47 H 0.154 0.846 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.622 2.411 25.180 25.303 hybrid contribution -0.095 -0.492 -0.485 0.697 sum -0.716 1.919 24.696 24.780 Atomic orbital electron populations 1.21816 0.97765 0.99144 1.00008 1.18364 0.92809 0.92780 0.90546 1.21817 0.98545 0.98360 1.00000 1.20942 1.31470 1.12090 0.89866 0.92481 1.24884 0.94893 0.94949 0.98837 1.69797 1.36665 1.22722 1.23287 0.86630 0.79222 0.79791 0.82180 1.20292 1.21365 1.20301 1.21583 0.97850 0.95411 0.82410 1.45494 1.55522 1.33031 1.04556 1.16066 0.80549 0.82960 0.80716 1.90883 1.43281 1.27786 1.86158 1.45014 1.57654 1.33655 1.04297 1.21816 1.00413 0.97262 0.81286 1.20172 0.81423 0.96613 0.89336 1.21768 1.01865 0.92546 1.03147 1.86563 1.19189 1.35100 1.94564 1.20434 0.95466 1.00812 0.95939 1.21116 0.95689 0.95915 0.97141 1.21188 1.00842 1.03205 0.91859 1.17815 0.94397 0.99478 0.80304 1.91508 1.90488 1.88526 1.41389 1.21167 0.95445 1.01681 0.99136 1.20870 1.00054 0.97348 0.90599 0.97528 0.89663 0.95479 0.95480 0.89655 0.97552 0.92981 0.92973 0.92991 0.77161 0.76778 0.90667 0.91303 0.90571 0.91047 0.91329 0.77033 0.84211 0.84447 0.84611 0.84175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.19 8.01 -34.44 -0.28 -13.46 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.51 9.35 55.43 0.52 -22.99 16 8 Si 0.89 20.70 29.54 -169.99 -5.02 15.67 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 12 C 0.15 3.21 4.50 -4.04 -0.02 3.19 16 13 N -0.73 -12.98 4.96 -65.22 -0.32 -13.31 16 14 C 0.70 12.08 8.57 -86.92 -0.74 11.34 16 15 O -0.60 -12.76 16.34 5.28 0.09 -12.68 16 16 N -0.75 -9.27 5.19 -65.22 -0.34 -9.61 16 17 C 0.12 1.21 4.28 -4.04 -0.02 1.19 16 18 C 0.17 1.29 0.90 -91.77 -0.08 1.20 16 19 C -0.14 -1.02 8.60 37.16 0.32 -0.70 16 20 O -0.55 -4.23 11.91 -35.23 -0.42 -4.65 16 21 C -0.13 -0.93 4.81 -104.62 -0.50 -1.43 16 22 C -0.08 -0.61 9.13 -39.60 -0.36 -0.97 16 23 C -0.15 -1.17 10.03 -39.52 -0.40 -1.57 16 24 C 0.10 0.83 7.30 -39.42 -0.29 0.54 16 25 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 26 C -0.16 -1.11 10.03 -39.52 -0.40 -1.50 16 27 C -0.07 -0.48 9.34 -39.60 -0.37 -0.85 16 28 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 29 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 33 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 34 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.39 6.29 6.18 -40.82 -0.25 6.04 16 38 H 0.40 4.20 7.00 -40.82 -0.29 3.92 16 39 H 0.08 0.79 6.21 -51.93 -0.32 0.47 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.55 6.58 -51.93 -0.34 0.21 16 43 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 44 H 0.38 2.07 9.04 45.56 0.41 2.48 16 45 H 0.14 0.98 6.04 -52.48 -0.32 0.66 16 46 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 47 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 48 H 0.14 0.80 7.49 -52.49 -0.39 0.41 16 LS Contribution 386.76 15.07 5.83 5.83 Total: -1.00 -30.28 386.76 -8.52 -38.80 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -6.19 Total: 9.59 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -2.70 Total: -5.40 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: -0.14 Total: -45.90 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.33 Total: -17.33 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.28 -8.52 -38.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.778 kcal (2) G-P(sol) polarization free energy of solvation -30.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds