Wall clock time and date at job start Tue Mar 31 2020 20:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.46830 * 2 1 4 4 C 1.50700 * 109.47465 * 239.99786 * 2 1 3 5 5 H 1.07991 * 119.99829 * 240.00000 * 4 2 1 6 6 C 1.37882 * 119.99551 * 59.99681 * 4 2 1 7 7 N 1.31515 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99567 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47100 * 59.99717 * 8 6 4 10 10 H 1.48501 * 109.46778 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46838 * 299.99800 * 8 6 4 12 12 C 1.53004 * 109.47418 * 119.99518 * 2 1 3 13 13 N 1.46501 * 109.46881 * 300.00672 * 12 2 1 14 14 C 1.34775 * 119.99754 * 180.02562 * 13 12 2 15 15 O 1.21593 * 120.00069 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99982 * 179.97438 * 14 13 12 17 17 C 1.46506 * 119.99766 * 179.97438 * 16 14 13 18 18 C 1.53003 * 109.46741 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.47115 * 304.99999 * 18 17 16 20 20 O 1.42905 * 109.46717 * 65.00352 * 18 17 16 21 21 C 1.50699 * 109.46893 * 184.99870 * 18 17 16 22 22 C 1.38247 * 119.97465 * 29.73093 * 21 18 17 23 23 C 1.38190 * 120.02973 * 180.27547 * 22 21 18 24 24 C 1.38466 * 119.97055 * 359.97438 * 23 22 21 25 25 F 1.35097 * 120.02197 * 179.97438 * 24 23 22 26 26 C 1.38454 * 119.94878 * 0.02562 * 24 23 22 27 27 C 1.38192 * 119.97677 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47334 * 299.99838 * 1 2 3 29 29 H 1.08994 * 109.47537 * 60.00185 * 1 2 3 30 30 H 1.09006 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47128 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.46879 * 299.99683 * 3 2 1 33 33 H 1.08995 * 109.47711 * 60.00130 * 3 2 1 34 34 H 0.97000 * 119.99493 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47177 * 179.97438 * 12 2 1 36 36 H 1.09004 * 109.46377 * 60.00003 * 12 2 1 37 37 H 0.96999 * 120.00298 * 359.97438 * 13 12 2 38 38 H 0.96994 * 119.99955 * 359.97438 * 16 14 13 39 39 H 1.09002 * 109.46827 * 59.99880 * 17 16 14 40 40 H 1.08999 * 109.46992 * 300.00072 * 17 16 14 41 41 H 1.08992 * 109.47504 * 299.99784 * 19 18 17 42 42 H 1.09004 * 109.47083 * 60.00893 * 19 18 17 43 43 H 1.09008 * 109.46814 * 179.97438 * 19 18 17 44 44 H 0.96696 * 113.99932 * 60.00086 * 20 18 17 45 45 H 1.08003 * 119.98380 * 0.24954 * 22 21 18 46 46 H 1.08005 * 120.01789 * 180.02562 * 23 22 21 47 47 H 1.08001 * 120.01228 * 179.97438 * 26 24 23 48 48 H 1.07998 * 119.99239 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8260 -2.5204 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0400 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8776 -0.4906 3.6695 15 8 2.5768 -1.4791 3.7812 16 7 1.4287 0.1451 4.7700 17 6 1.7827 -0.3554 6.1006 18 6 1.1504 0.5409 7.1673 19 6 1.5720 1.9922 6.9293 20 8 -0.2730 0.4397 7.0917 21 6 1.6135 0.1006 8.5322 22 6 2.8570 -0.4840 8.6843 23 6 3.2805 -0.8933 9.9344 24 6 2.4589 -0.7173 11.0350 25 9 2.8716 -1.1176 12.2575 26 6 1.2137 -0.1317 10.8814 27 6 0.7920 0.2759 9.6301 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.7094 1.1617 -3.4844 35 1 3.1300 -0.7215 1.2490 36 1 1.6767 -1.7488 1.2493 37 1 0.9941 0.7583 2.3564 38 1 0.8713 0.9339 4.6809 39 1 2.8666 -0.3470 6.2154 40 1 1.4130 -1.3743 6.2158 41 1 2.6576 2.0694 6.9870 42 1 1.2369 2.3107 5.9422 43 1 1.1211 2.6308 7.6891 44 1 -0.6118 -0.4549 7.2332 45 1 3.4976 -0.6212 7.8257 46 1 4.2522 -1.3496 10.0531 47 1 0.5719 0.0057 11.7391 48 1 -0.1794 0.7323 9.5100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838753788.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:42 Heat of formation + Delta-G solvation = -125.237373 kcal Electronic energy + Delta-G solvation = -29084.868462 eV Core-core repulsion = 24860.326677 eV Total energy + Delta-G solvation = -4224.541785 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.93109 -41.39737 -40.56679 -38.49083 -37.94696 -35.35760 -34.93939 -33.23764 -32.44535 -32.08159 -30.01284 -28.07723 -27.53012 -27.31875 -26.16795 -24.21853 -23.72651 -21.96823 -21.39278 -20.55566 -19.64500 -18.90441 -18.32890 -17.75500 -17.32508 -16.96920 -16.70558 -16.61760 -16.60365 -16.11076 -15.77542 -15.49329 -15.17411 -15.02166 -14.71521 -14.64276 -14.44094 -14.13081 -13.96704 -13.91923 -13.52972 -13.31288 -13.19654 -13.09249 -13.06176 -12.76768 -12.63706 -12.60403 -12.22131 -12.15139 -12.11574 -11.80212 -11.45066 -11.38299 -11.21372 -11.05839 -10.68226 -10.38387 -10.26963 -10.09909 -9.64263 -9.62475 -7.99828 -6.15172 0.04924 0.24366 1.45755 1.46794 1.53231 1.80367 2.23661 2.47969 2.53204 3.16352 3.23647 3.26443 3.37796 3.54382 3.65365 3.84790 3.93274 3.99786 4.28709 4.40604 4.45263 4.56660 4.60673 4.68883 4.75083 4.80303 4.90123 4.96583 5.00788 5.03688 5.09473 5.13815 5.14631 5.21943 5.23550 5.26562 5.41443 5.43580 5.52749 5.66466 5.69758 5.70519 5.86661 6.09037 6.18415 6.25165 6.46485 6.71676 6.88955 7.18530 7.52169 7.66726 8.98795 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.031539 B = 0.001898 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.566627 B =14747.063702 C =15207.616674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.527 4.527 5 H 0.044 0.956 6 C 0.027 3.973 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.696 3.304 15 O -0.642 6.642 16 N -0.727 5.727 17 C 0.114 3.886 18 C 0.181 3.819 19 C -0.139 4.139 20 O -0.553 6.553 21 C -0.125 4.125 22 C -0.088 4.088 23 C -0.158 4.158 24 C 0.081 3.919 25 F -0.150 7.150 26 C -0.155 4.155 27 C -0.067 4.067 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.260 0.740 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.405 0.595 38 H 0.410 0.590 39 H 0.074 0.926 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.392 0.608 45 H 0.143 0.857 46 H 0.146 0.854 47 H 0.152 0.848 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 3.470 26.534 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.566 4.566 5 H 0.063 0.937 6 C -0.173 4.173 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.044 3.956 13 N -0.381 5.381 14 C 0.396 3.604 15 O -0.524 6.524 16 N -0.384 5.384 17 C -0.010 4.010 18 C 0.140 3.860 19 C -0.197 4.197 20 O -0.360 6.360 21 C -0.126 4.126 22 C -0.106 4.106 23 C -0.177 4.177 24 C 0.062 3.938 25 F -0.129 7.129 26 C -0.173 4.173 27 C -0.085 4.085 28 H 0.055 0.945 29 H 0.081 0.919 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.241 0.759 38 H 0.247 0.753 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.242 0.758 45 H 0.160 0.840 46 H 0.164 0.836 47 H 0.170 0.830 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.458 3.317 26.411 26.659 hybrid contribution 0.141 -0.768 -0.791 1.112 sum -1.317 2.549 25.620 25.780 Atomic orbital electron populations 1.21655 0.97118 0.98592 1.00336 1.18365 0.93259 0.93095 0.90250 1.21653 0.97882 0.97799 1.00353 1.21236 1.31679 1.12159 0.91535 0.93731 1.25454 0.95213 0.95643 1.00943 1.69902 1.36969 1.23235 1.23605 0.85830 0.78613 0.78805 0.79621 1.20311 1.20880 1.20289 1.21105 0.96683 0.94616 0.83233 1.45189 1.55788 1.33208 1.03931 1.16181 0.80233 0.82646 0.81326 1.90861 1.45119 1.29714 1.86745 1.44841 1.56555 1.33245 1.03785 1.22003 1.00728 0.97641 0.80668 1.19961 0.81384 0.96190 0.88501 1.21819 1.02247 0.92256 1.03339 1.86551 1.18821 1.36165 1.94512 1.20418 0.95480 1.00863 0.95886 1.21191 0.96003 0.96171 0.97188 1.21332 1.01302 1.03196 0.91834 1.18055 0.95215 1.00404 0.80130 1.91483 1.90670 1.88772 1.41935 1.21381 0.95125 1.00905 0.99915 1.21006 1.00422 0.96936 0.90134 0.94456 0.91945 0.96417 0.96351 0.91955 0.94415 0.93061 0.94616 0.94733 0.75860 0.75294 0.90767 0.91899 0.90229 0.91158 0.90569 0.75807 0.83958 0.83634 0.83005 0.82723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.31 16 3 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 4 C -0.53 -27.78 8.01 25.60 0.21 -27.58 16 5 H 0.04 2.40 7.74 -2.92 -0.02 2.37 16 6 C 0.03 1.43 5.15 84.66 0.44 1.87 16 7 N -0.90 -47.62 9.35 21.45 0.20 -47.42 16 8 Si 0.94 42.49 29.54 68.60 2.03 44.52 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.17 7.16 4.50 86.38 0.39 7.55 16 13 N -0.73 -24.72 4.96 -478.52 -2.37 -27.10 16 14 C 0.70 23.27 8.57 179.05 1.53 24.81 16 15 O -0.64 -27.04 16.34 -4.01 -0.07 -27.10 16 16 N -0.73 -16.56 5.19 -478.50 -2.49 -19.05 16 17 C 0.11 2.15 4.28 86.38 0.37 2.52 16 18 C 0.18 2.40 0.90 -11.54 -0.01 2.39 16 19 C -0.14 -1.74 8.60 71.98 0.62 -1.12 16 20 O -0.55 -7.00 11.91 -148.98 -1.77 -8.77 16 21 C -0.13 -1.61 4.81 -19.86 -0.10 -1.70 16 22 C -0.09 -1.22 9.13 22.26 0.20 -1.01 16 23 C -0.16 -2.30 10.03 22.31 0.22 -2.07 16 24 C 0.08 1.27 7.30 22.38 0.16 1.43 16 25 F -0.15 -2.70 17.27 44.97 0.78 -1.93 16 26 C -0.15 -1.92 10.03 22.31 0.22 -1.70 16 27 C -0.07 -0.76 9.34 22.26 0.21 -0.55 16 28 H 0.04 1.36 6.86 -2.39 -0.02 1.35 16 29 H 0.06 3.06 6.07 -2.39 -0.01 3.04 16 30 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 3.04 6.07 -2.39 -0.01 3.03 16 33 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 34 H 0.26 13.32 8.31 -92.71 -0.77 12.55 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.40 11.89 6.18 -92.71 -0.57 11.32 16 38 H 0.41 7.53 7.00 -92.71 -0.65 6.88 16 39 H 0.07 1.46 6.21 -2.39 -0.01 1.45 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.89 6.58 -2.38 -0.02 0.88 16 43 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 44 H 0.39 3.22 9.04 -74.06 -0.67 2.55 16 45 H 0.14 1.85 6.04 -2.91 -0.02 1.84 16 46 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 47 H 0.15 1.33 8.06 -2.91 -0.02 1.30 16 48 H 0.16 1.30 7.49 -2.91 -0.02 1.28 16 Total: -1.00 -64.55 386.76 1.03 -63.52 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: -0.88 Total: 25.49 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 5.60 Total: -2.16 kcal Atomic # 7 Polarization: -88.91 SS G_CDS: -4.66 Total: -93.57 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -1.84 Total: -35.88 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -64.55 1.03 -63.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838753788.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.714 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds