Wall clock time and date at job start Tue Mar 31 2020 22:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.74808 * 2 1 4 4 C 1.53368 * 109.60894 * 239.57333 * 2 1 3 5 5 N 1.46966 * 108.63329 * 190.83393 * 4 2 1 6 6 C 1.34781 * 120.58925 * 235.20496 * 5 4 2 7 7 O 1.21276 * 120.00141 * 5.76731 * 6 5 4 8 8 C 1.50704 * 119.99358 * 185.76751 * 6 5 4 9 9 C 1.53413 * 108.70231 * 275.70407 * 8 6 5 10 10 C 1.54738 * 108.84394 * 176.19007 * 9 8 6 11 11 H 1.09006 * 114.19415 * 195.91786 * 10 9 8 12 12 C 1.54968 * 105.20394 * 322.12961 * 10 9 8 13 13 C 1.52454 * 111.72083 * 81.66937 * 12 10 9 14 14 C 1.54970 * 111.71973 * 0.02562 * 13 12 10 15 15 H 1.08995 * 114.36951 * 152.81650 * 14 13 12 16 16 C 1.52462 * 108.78747 * 151.84906 * 8 6 5 17 17 S 1.84395 * 101.87120 * 28.29445 * 14 13 12 18 18 C 1.46958 * 118.81238 * 55.47966 * 5 4 2 19 19 C 1.53814 * 108.39605 * 304.48124 * 18 5 4 20 20 H 1.09001 * 109.88507 * 289.76661 * 19 18 5 21 21 C 1.53004 * 109.53126 * 169.30589 * 19 18 5 22 22 N 1.46958 * 108.58089 * 49.63939 * 19 18 5 23 23 C 1.36940 * 120.59345 * 124.62032 * 22 19 18 24 24 H 1.08009 * 120.00044 * 233.98400 * 23 22 19 25 25 C 1.38809 * 120.00072 * 53.98859 * 23 22 19 26 26 N 1.31624 * 119.99647 * 23.51098 * 25 23 22 27 27 Si 1.86794 * 120.00323 * 203.51111 * 25 23 22 28 28 H 1.48498 * 109.47185 * 89.99591 * 27 25 23 29 29 H 1.48502 * 109.47463 * 210.00169 * 27 25 23 30 30 H 1.48507 * 109.46952 * 329.99973 * 27 25 23 31 31 H 1.09002 * 109.47010 * 180.42263 * 1 2 3 32 32 H 1.08998 * 109.47260 * 300.42490 * 1 2 3 33 33 H 1.09007 * 109.46873 * 60.42680 * 1 2 3 34 34 H 1.09000 * 109.61261 * 71.08928 * 4 2 1 35 35 H 1.09001 * 109.75255 * 310.66012 * 4 2 1 36 36 H 1.08995 * 108.66687 * 33.55461 * 8 6 5 37 37 H 1.08998 * 110.36647 * 55.99144 * 9 8 6 38 38 H 1.08997 * 109.10477 * 295.63227 * 9 8 6 39 39 H 1.09002 * 109.03681 * 321.07930 * 12 10 9 40 40 H 1.09003 * 109.04363 * 202.26660 * 12 10 9 41 41 H 1.09001 * 109.03967 * 239.40317 * 13 12 10 42 42 H 1.08997 * 108.94630 * 120.52908 * 13 12 10 43 43 H 1.08996 * 109.50280 * 64.36930 * 16 8 6 44 44 H 1.09002 * 109.50413 * 304.29490 * 16 8 6 45 45 H 1.08992 * 109.61518 * 64.26567 * 18 5 4 46 46 H 1.08997 * 109.61047 * 184.77931 * 18 5 4 47 47 H 1.08999 * 109.47089 * 292.38673 * 21 19 18 48 48 H 1.08996 * 109.47434 * 52.39034 * 21 19 18 49 49 H 1.09001 * 109.47205 * 172.39240 * 21 19 18 50 50 H 0.97005 * 119.99571 * 184.90228 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0448 -0.7317 -1.2458 5 7 3.4908 -0.9489 -1.0988 6 6 4.3492 -0.5133 -2.0422 7 8 3.9432 0.1541 -2.9698 8 6 5.8136 -0.8555 -1.9441 9 6 6.4967 0.1646 -1.0242 10 6 7.9795 -0.2393 -0.8439 11 1 8.4774 0.2505 -0.0070 12 6 7.9728 -1.7870 -0.7669 13 6 7.9164 -2.4207 -2.1524 14 6 7.8813 -1.3496 -3.2718 15 1 8.2972 -1.6801 -4.2236 16 6 6.4043 -0.8926 -3.3492 17 16 8.7764 0.0552 -2.4809 18 6 3.9835 -1.6550 0.0921 19 6 3.4693 -0.9184 1.3406 20 1 3.9753 0.0420 1.4392 21 6 3.7370 -1.7697 2.5834 22 7 2.0233 -0.7011 1.1937 23 6 1.1510 -1.1445 2.1518 24 1 0.3230 -1.7806 1.8754 25 6 1.3309 -0.7765 3.4780 26 7 2.0034 0.3161 3.7723 27 14 0.6187 -1.8315 4.8451 28 1 1.6162 -2.8535 5.2524 29 1 0.2852 -0.9733 6.0102 30 1 -0.6116 -2.5067 4.3593 31 1 -0.3633 -1.0277 0.0076 32 1 -0.3634 0.5204 0.8861 33 1 -0.3633 0.5072 -0.8939 34 1 1.8541 -0.1252 -2.1312 35 1 1.5387 -1.6920 -1.3443 36 1 5.9115 -1.8442 -1.4960 37 1 6.0049 0.1873 -0.0517 38 1 6.4415 1.1517 -1.4829 39 1 7.1048 -2.1106 -0.1923 40 1 8.8774 -2.1218 -0.2593 41 1 7.0222 -3.0399 -2.2240 42 1 8.7959 -3.0496 -2.2900 43 1 6.3541 0.1023 -3.7914 44 1 5.8384 -1.5929 -3.9635 45 1 3.6121 -2.6797 0.0898 46 1 5.0735 -1.6584 0.0906 47 1 3.1162 -2.6650 2.5512 48 1 4.7881 -2.0571 2.6075 49 1 3.4974 -1.1935 3.4771 50 1 2.1903 0.5358 4.6985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898133030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:25 Heat of formation + Delta-G solvation = -0.269819 kcal Electronic energy + Delta-G solvation = -29872.406285 eV Core-core repulsion = 26219.496676 eV Total energy + Delta-G solvation = -3652.909609 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.63729 -38.51695 -37.20389 -34.22190 -33.16458 -32.04133 -31.76365 -31.27256 -27.88366 -27.06235 -25.85972 -25.35455 -24.51357 -23.66683 -20.85936 -20.41691 -20.24635 -19.61274 -18.58541 -17.76419 -17.09262 -16.13950 -15.80354 -14.97352 -14.80296 -14.76326 -14.50013 -14.43420 -13.85557 -13.79453 -13.67576 -13.17567 -13.10574 -13.04627 -12.85124 -12.37425 -12.17316 -12.15063 -11.79829 -11.66404 -11.60301 -11.41965 -11.20375 -11.04479 -10.89037 -10.70554 -10.60365 -10.58511 -10.54992 -10.49911 -10.39773 -10.11681 -9.99012 -9.81628 -9.76384 -9.27656 -8.41062 -8.04374 -7.74580 -6.50601 -5.81380 -3.65728 1.75230 2.12577 2.90833 3.25516 3.34761 3.35740 3.38261 4.12873 4.35056 4.38571 4.56751 4.63704 4.69684 4.79301 4.87577 5.00124 5.00183 5.11874 5.19434 5.34746 5.44459 5.54974 5.61196 5.66926 5.68735 5.71807 5.80009 5.82340 5.84668 5.93336 5.96775 6.05761 6.08628 6.15223 6.19630 6.32218 6.38580 6.48976 6.51652 6.60365 6.74111 6.93002 7.07336 7.22854 7.28075 7.50476 7.76208 7.88163 8.51694 8.52737 9.08518 9.61551 10.39655 11.05102 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.003731 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.655318 B = 7502.033217 C = 8411.570179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.157 3.843 3 H 0.029 0.971 4 C 0.099 3.901 5 N -0.596 5.596 6 C 0.513 3.487 7 O -0.554 6.554 8 C -0.114 4.114 9 C -0.108 4.108 10 C -0.025 4.025 11 H 0.128 0.872 12 C -0.127 4.127 13 C -0.125 4.125 14 C -0.030 4.030 15 H 0.126 0.874 16 C -0.096 4.096 17 S -0.308 6.308 18 C 0.085 3.915 19 C 0.183 3.817 20 H 0.032 0.968 21 C -0.142 4.142 22 N -0.575 5.575 23 C -0.268 4.268 24 H 0.054 0.946 25 C 0.042 3.958 26 N -0.868 5.868 27 Si 0.877 3.123 28 H -0.281 1.281 29 H -0.290 1.290 30 H -0.274 1.274 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.036 0.964 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.055 0.945 48 H 0.024 0.976 49 H 0.086 0.914 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.101 -5.839 -8.893 15.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 H 0.047 0.953 4 C -0.025 4.025 5 N -0.327 5.327 6 C 0.301 3.699 7 O -0.433 6.433 8 C -0.135 4.135 9 C -0.147 4.147 10 C -0.154 4.154 11 H 0.146 0.854 12 C -0.166 4.166 13 C -0.164 4.164 14 C -0.159 4.159 15 H 0.144 0.856 16 C -0.136 4.136 17 S -0.080 6.080 18 C -0.040 4.040 19 C 0.075 3.925 20 H 0.050 0.950 21 C -0.200 4.200 22 N -0.299 5.299 23 C -0.398 4.398 24 H 0.071 0.929 25 C -0.161 4.161 26 N -0.507 5.507 27 Si 0.705 3.295 28 H -0.208 1.208 29 H -0.217 1.217 30 H -0.199 1.199 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.105 0.895 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.681 -4.507 -9.626 15.793 hybrid contribution -1.016 -1.343 1.373 2.173 sum 10.665 -5.849 -8.253 14.700 Atomic orbital electron populations 1.21636 0.94997 1.01414 1.00382 1.20868 0.93579 0.93782 0.86777 0.95343 1.22305 0.79139 1.00633 1.00417 1.48040 1.07399 1.56339 1.20930 1.20505 0.87898 0.79572 0.81923 1.90638 1.79168 1.39194 1.34325 1.21584 0.92494 1.01822 0.97622 1.22241 0.92936 0.99461 1.00110 1.24584 0.97251 0.97883 0.95660 0.85383 1.22351 1.03620 0.93167 0.97463 1.22322 1.03238 0.98142 0.92664 1.24607 0.97033 0.93541 1.00683 0.85589 1.21903 0.92539 1.03707 0.95405 1.88120 1.61329 1.45703 1.12850 1.22817 0.97892 0.96613 0.86678 1.20677 0.86120 0.95093 0.90567 0.95038 1.21971 0.97068 1.00717 1.00270 1.43943 1.00794 1.64933 1.20237 1.18654 1.09757 1.24720 0.86645 0.92864 1.25495 0.97472 0.94177 0.99002 1.70245 1.41822 1.20486 1.18115 0.86732 0.79653 0.80752 0.82346 1.20767 1.21654 1.19904 0.92891 0.91440 0.94458 0.90245 0.92133 0.88173 0.89549 0.89885 0.90045 0.90680 0.90316 0.90880 0.89381 0.90726 0.91768 0.91170 0.92625 0.95690 0.89501 0.93542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.42 8.18 37.16 0.30 -2.12 16 2 C 0.16 3.26 3.65 -67.48 -0.25 3.01 16 3 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 4 C 0.10 1.82 5.91 -3.60 -0.02 1.80 16 5 N -0.60 -10.30 2.94 -172.22 -0.51 -10.80 16 6 C 0.51 8.58 6.70 -10.98 -0.07 8.51 16 7 O -0.55 -11.01 15.58 5.56 0.09 -10.92 16 8 C -0.11 -1.44 1.20 -91.83 -0.11 -1.55 16 9 C -0.11 -1.34 4.40 -25.60 -0.11 -1.45 16 10 C -0.03 -0.26 4.83 -24.78 -0.12 -0.38 16 11 H 0.13 1.20 8.14 -51.93 -0.42 0.77 16 12 C -0.13 -1.12 5.21 -25.97 -0.14 -1.25 16 13 C -0.12 -1.04 5.21 -25.97 -0.14 -1.18 16 14 C -0.03 -0.29 4.88 -24.74 -0.12 -0.41 16 15 H 0.13 1.03 8.14 -51.93 -0.42 0.60 16 16 C -0.10 -1.13 4.17 -26.06 -0.11 -1.24 16 17 S -0.31 -3.60 22.01 -107.50 -2.37 -5.96 16 18 C 0.08 1.37 5.33 -3.37 -0.02 1.36 16 19 C 0.18 3.70 3.31 -67.25 -0.22 3.47 16 20 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 21 C -0.14 -2.83 7.84 37.16 0.29 -2.54 16 22 N -0.57 -12.98 2.75 -156.76 -0.43 -13.41 16 23 C -0.27 -6.59 6.59 -15.06 -0.10 -6.68 16 24 H 0.05 1.34 7.19 -52.48 -0.38 0.97 16 25 C 0.04 1.04 3.14 -17.43 -0.05 0.99 16 26 N -0.87 -23.11 12.01 55.49 0.67 -22.44 16 27 Si 0.88 19.68 29.62 -169.99 -5.03 14.64 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 30 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 31 H 0.05 1.00 7.44 -51.93 -0.39 0.61 16 32 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 33 H 0.04 0.61 8.14 -51.92 -0.42 0.19 16 34 H 0.08 1.48 6.99 -51.93 -0.36 1.12 16 35 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 36 H 0.10 1.12 2.93 -51.93 -0.15 0.97 16 37 H 0.09 1.14 7.10 -51.93 -0.37 0.77 16 38 H 0.08 1.16 8.05 -51.93 -0.42 0.75 16 39 H 0.08 0.71 5.85 -51.93 -0.30 0.40 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.63 6.77 -51.93 -0.35 0.28 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.21 7.86 -51.93 -0.41 0.80 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 46 H 0.07 0.94 3.88 -51.93 -0.20 0.74 16 47 H 0.05 1.13 7.53 -51.93 -0.39 0.74 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.09 2.00 5.10 -51.93 -0.26 1.73 16 50 H 0.25 6.58 8.32 -40.82 -0.34 6.24 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -28.46 369.07 -11.18 -39.64 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -8.17 Total: 3.37 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -0.98 Total: 0.33 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.27 Total: -46.66 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.09 Total: -10.92 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.64 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.37 Total: -5.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -28.46 -11.18 -39.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898133030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.369 kcal (2) G-P(sol) polarization free energy of solvation -28.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds