Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.74808 * 2 1 4 4 C 1.53368 * 109.60894 * 239.57333 * 2 1 3 5 5 N 1.46966 * 108.63329 * 190.83393 * 4 2 1 6 6 C 1.34781 * 120.58925 * 235.20496 * 5 4 2 7 7 O 1.21276 * 120.00141 * 5.76731 * 6 5 4 8 8 C 1.50704 * 119.99358 * 185.76751 * 6 5 4 9 9 C 1.53413 * 108.70231 * 275.70407 * 8 6 5 10 10 C 1.54738 * 108.84394 * 176.19007 * 9 8 6 11 11 H 1.09006 * 114.19415 * 195.91786 * 10 9 8 12 12 C 1.54968 * 105.20394 * 322.12961 * 10 9 8 13 13 C 1.52454 * 111.72083 * 81.66937 * 12 10 9 14 14 C 1.54970 * 111.71973 * 0.02562 * 13 12 10 15 15 H 1.08995 * 114.36951 * 152.81650 * 14 13 12 16 16 C 1.52462 * 108.78747 * 151.84906 * 8 6 5 17 17 S 1.84395 * 101.87120 * 28.29445 * 14 13 12 18 18 C 1.46958 * 118.81238 * 55.47966 * 5 4 2 19 19 C 1.53814 * 108.39605 * 304.48124 * 18 5 4 20 20 H 1.09001 * 109.88507 * 289.76661 * 19 18 5 21 21 C 1.53004 * 109.53126 * 169.30589 * 19 18 5 22 22 N 1.46958 * 108.58089 * 49.63939 * 19 18 5 23 23 C 1.36940 * 120.59345 * 124.62032 * 22 19 18 24 24 H 1.08009 * 120.00044 * 233.98400 * 23 22 19 25 25 C 1.38809 * 120.00072 * 53.98859 * 23 22 19 26 26 N 1.31624 * 119.99647 * 23.51098 * 25 23 22 27 27 Si 1.86794 * 120.00323 * 203.51111 * 25 23 22 28 28 H 1.48498 * 109.47185 * 89.99591 * 27 25 23 29 29 H 1.48502 * 109.47463 * 210.00169 * 27 25 23 30 30 H 1.48507 * 109.46952 * 329.99973 * 27 25 23 31 31 H 1.09002 * 109.47010 * 180.42263 * 1 2 3 32 32 H 1.08998 * 109.47260 * 300.42490 * 1 2 3 33 33 H 1.09007 * 109.46873 * 60.42680 * 1 2 3 34 34 H 1.09000 * 109.61261 * 71.08928 * 4 2 1 35 35 H 1.09001 * 109.75255 * 310.66012 * 4 2 1 36 36 H 1.08995 * 108.66687 * 33.55461 * 8 6 5 37 37 H 1.08998 * 110.36647 * 55.99144 * 9 8 6 38 38 H 1.08997 * 109.10477 * 295.63227 * 9 8 6 39 39 H 1.09002 * 109.03681 * 321.07930 * 12 10 9 40 40 H 1.09003 * 109.04363 * 202.26660 * 12 10 9 41 41 H 1.09001 * 109.03967 * 239.40317 * 13 12 10 42 42 H 1.08997 * 108.94630 * 120.52908 * 13 12 10 43 43 H 1.08996 * 109.50280 * 64.36930 * 16 8 6 44 44 H 1.09002 * 109.50413 * 304.29490 * 16 8 6 45 45 H 1.08992 * 109.61518 * 64.26567 * 18 5 4 46 46 H 1.08997 * 109.61047 * 184.77931 * 18 5 4 47 47 H 1.08999 * 109.47089 * 292.38673 * 21 19 18 48 48 H 1.08996 * 109.47434 * 52.39034 * 21 19 18 49 49 H 1.09001 * 109.47205 * 172.39240 * 21 19 18 50 50 H 0.97005 * 119.99571 * 184.90228 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0448 -0.7317 -1.2458 5 7 3.4908 -0.9489 -1.0988 6 6 4.3492 -0.5133 -2.0422 7 8 3.9432 0.1541 -2.9698 8 6 5.8136 -0.8555 -1.9441 9 6 6.4967 0.1646 -1.0242 10 6 7.9795 -0.2393 -0.8439 11 1 8.4774 0.2505 -0.0070 12 6 7.9728 -1.7870 -0.7669 13 6 7.9164 -2.4207 -2.1524 14 6 7.8813 -1.3496 -3.2718 15 1 8.2972 -1.6801 -4.2236 16 6 6.4043 -0.8926 -3.3492 17 16 8.7764 0.0552 -2.4809 18 6 3.9835 -1.6550 0.0921 19 6 3.4693 -0.9184 1.3406 20 1 3.9753 0.0420 1.4392 21 6 3.7370 -1.7697 2.5834 22 7 2.0233 -0.7011 1.1937 23 6 1.1510 -1.1445 2.1518 24 1 0.3230 -1.7806 1.8754 25 6 1.3309 -0.7765 3.4780 26 7 2.0034 0.3161 3.7723 27 14 0.6187 -1.8315 4.8451 28 1 1.6162 -2.8535 5.2524 29 1 0.2852 -0.9733 6.0102 30 1 -0.6116 -2.5067 4.3593 31 1 -0.3633 -1.0277 0.0076 32 1 -0.3634 0.5204 0.8861 33 1 -0.3633 0.5072 -0.8939 34 1 1.8541 -0.1252 -2.1312 35 1 1.5387 -1.6920 -1.3443 36 1 5.9115 -1.8442 -1.4960 37 1 6.0049 0.1873 -0.0517 38 1 6.4415 1.1517 -1.4829 39 1 7.1048 -2.1106 -0.1923 40 1 8.8774 -2.1218 -0.2593 41 1 7.0222 -3.0399 -2.2240 42 1 8.7959 -3.0496 -2.2900 43 1 6.3541 0.1023 -3.7914 44 1 5.8384 -1.5929 -3.9635 45 1 3.6121 -2.6797 0.0898 46 1 5.0735 -1.6584 0.0906 47 1 3.1162 -2.6650 2.5512 48 1 4.7881 -2.0571 2.6075 49 1 3.4974 -1.1935 3.4771 50 1 2.1903 0.5358 4.6985 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898133030.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = -14.737195 kcal Electronic energy + Delta-G solvation = -29873.033638 eV Core-core repulsion = 26219.496676 eV Total energy + Delta-G solvation = -3653.536962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.83676 -39.72888 -38.66997 -35.82810 -34.73003 -33.09332 -32.90885 -32.70079 -29.56579 -28.32776 -27.35079 -26.70066 -25.41421 -25.21511 -22.19479 -21.92983 -21.16334 -20.95110 -19.86224 -18.86140 -18.22245 -17.75622 -17.23311 -16.67943 -16.32639 -16.01718 -15.92914 -15.43671 -15.36395 -14.85311 -14.70434 -14.67834 -14.35573 -14.10494 -14.00062 -13.64095 -13.45642 -13.36354 -13.23014 -13.07583 -12.97432 -12.67869 -12.63513 -12.48775 -12.31344 -12.22287 -12.12985 -11.97640 -11.80006 -11.68607 -11.65673 -11.51382 -11.46669 -11.26892 -10.75307 -10.54876 -10.19621 -9.64524 -8.66370 -8.39428 -7.67442 -5.59661 0.93073 1.32415 1.46460 1.52319 1.57048 1.57549 2.02975 2.51968 3.22372 3.29286 3.35708 3.50891 3.68064 3.79013 3.82338 3.96739 4.07505 4.11494 4.13336 4.19251 4.29366 4.32760 4.42508 4.51248 4.53111 4.56215 4.63707 4.74700 4.77317 4.81915 4.87003 4.87199 4.90843 4.94989 4.96416 5.04077 5.07478 5.11707 5.20553 5.22770 5.27013 5.37956 5.43147 5.61302 5.66128 5.76710 5.89962 6.50752 6.58824 7.16283 7.25159 7.78227 8.53292 9.12984 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017744 B = 0.003731 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.655318 B = 7502.033217 C = 8411.570179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.152 3.848 3 H -0.007 1.007 4 C 0.109 3.891 5 N -0.601 5.601 6 C 0.510 3.490 7 O -0.589 6.589 8 C -0.102 4.102 9 C -0.106 4.106 10 C -0.014 4.014 11 H 0.138 0.862 12 C -0.128 4.128 13 C -0.125 4.125 14 C -0.014 4.014 15 H 0.146 0.854 16 C -0.094 4.094 17 S -0.358 6.358 18 C 0.098 3.902 19 C 0.179 3.821 20 H 0.000 1.000 21 C -0.135 4.135 22 N -0.588 5.588 23 C -0.265 4.265 24 H 0.048 0.952 25 C 0.008 3.992 26 N -0.903 5.903 27 Si 0.930 3.070 28 H -0.272 1.272 29 H -0.301 1.301 30 H -0.271 1.271 31 H 0.057 0.943 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.126 0.874 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.054 0.946 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.464 -8.821 -9.372 17.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.045 3.955 3 H 0.011 0.989 4 C -0.015 4.015 5 N -0.332 5.332 6 C 0.299 3.701 7 O -0.470 6.470 8 C -0.123 4.123 9 C -0.145 4.145 10 C -0.142 4.142 11 H 0.156 0.844 12 C -0.166 4.166 13 C -0.163 4.163 14 C -0.142 4.142 15 H 0.163 0.837 16 C -0.133 4.133 17 S -0.130 6.130 18 C -0.025 4.025 19 C 0.072 3.928 20 H 0.018 0.982 21 C -0.193 4.193 22 N -0.313 5.313 23 C -0.395 4.395 24 H 0.066 0.934 25 C -0.192 4.192 26 N -0.544 5.544 27 Si 0.757 3.243 28 H -0.198 1.198 29 H -0.228 1.228 30 H -0.195 1.195 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.143 0.857 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.100 0.900 45 H 0.096 0.904 46 H 0.122 0.878 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.073 0.927 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.055 -7.512 -10.112 18.142 hybrid contribution -1.478 -0.297 1.475 2.109 sum 11.578 -7.810 -8.638 16.421 Atomic orbital electron populations 1.21520 0.93907 1.01618 1.00325 1.20920 0.94608 0.92254 0.87680 0.98893 1.22048 0.80273 1.00651 0.98510 1.48147 1.07040 1.56495 1.21476 1.21253 0.89369 0.78434 0.80999 1.90622 1.80052 1.40590 1.35773 1.21607 0.89254 1.02824 0.98592 1.22177 0.94742 0.98315 0.99279 1.24619 0.95055 0.99613 0.94948 0.84409 1.22409 1.04833 0.91282 0.98114 1.22363 1.04801 0.97670 0.91495 1.24699 0.94650 0.92697 1.02146 0.83675 1.21858 0.94355 1.02577 0.94555 1.88354 1.61901 1.47910 1.14850 1.22676 0.99766 0.96093 0.83999 1.20694 0.84659 0.94392 0.93006 0.98175 1.21841 0.99393 0.99584 0.98477 1.44214 1.01726 1.65063 1.20312 1.18758 1.09837 1.23828 0.87108 0.93420 1.25979 0.97930 0.94758 1.00559 1.70343 1.43884 1.22153 1.18035 0.85904 0.79267 0.79357 0.79751 1.19817 1.22839 1.19518 0.92351 0.94217 0.91830 0.90688 0.90882 0.85672 0.90296 0.92400 0.89329 0.89047 0.89095 0.89014 0.92068 0.89990 0.90448 0.87770 0.93109 0.91866 0.92710 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.46 8.18 71.98 0.59 -3.87 16 2 C 0.15 6.43 3.65 45.03 0.16 6.59 16 3 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 4 C 0.11 3.96 5.91 86.41 0.51 4.47 16 5 N -0.60 -20.00 2.94 -817.17 -2.40 -22.41 16 6 C 0.51 16.55 6.70 87.66 0.59 17.14 16 7 O -0.59 -23.47 15.58 -3.02 -0.05 -23.52 16 8 C -0.10 -2.37 1.20 -11.58 -0.01 -2.39 16 9 C -0.11 -2.51 4.40 31.33 0.14 -2.37 16 10 C -0.01 -0.26 4.83 31.86 0.15 -0.11 16 11 H 0.14 2.30 8.14 -2.38 -0.02 2.28 16 12 C -0.13 -1.72 5.21 31.09 0.16 -1.56 16 13 C -0.12 -1.53 5.21 31.09 0.16 -1.37 16 14 C -0.01 -0.23 4.88 31.88 0.16 -0.07 16 15 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.09 -2.04 4.17 31.03 0.13 -1.91 16 17 S -0.36 -7.86 22.01 -56.49 -1.24 -9.11 16 18 C 0.10 2.95 5.33 86.57 0.46 3.41 16 19 C 0.18 7.14 3.31 45.18 0.15 7.29 16 20 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 21 C -0.13 -5.17 7.84 71.98 0.56 -4.61 16 22 N -0.59 -26.72 2.75 -649.87 -1.78 -28.50 16 23 C -0.27 -13.05 6.59 84.03 0.55 -12.50 16 24 H 0.05 2.39 7.19 -2.91 -0.02 2.37 16 25 C 0.01 0.40 3.14 84.86 0.27 0.67 16 26 N -0.90 -49.29 12.01 21.65 0.26 -49.03 16 27 Si 0.93 40.49 29.62 68.60 2.03 42.52 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 29 H -0.30 -13.60 7.11 99.48 0.71 -12.89 16 30 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 31 H 0.06 2.16 7.44 -2.39 -0.02 2.15 16 32 H 0.04 1.72 7.75 -2.39 -0.02 1.70 16 33 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.07 2.78 6.99 -2.39 -0.02 2.77 16 35 H 0.07 2.48 8.12 -2.39 -0.02 2.46 16 36 H 0.13 2.29 2.93 -2.39 -0.01 2.28 16 37 H 0.08 2.00 7.10 -2.39 -0.02 1.98 16 38 H 0.06 1.66 8.05 -2.39 -0.02 1.65 16 39 H 0.09 1.09 5.85 -2.39 -0.01 1.08 16 40 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 0.96 6.77 -2.39 -0.02 0.94 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.06 1.68 7.86 -2.39 -0.02 1.66 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.08 2.21 8.12 -2.39 -0.02 2.19 16 46 H 0.10 2.40 3.88 -2.39 -0.01 2.39 16 47 H 0.05 1.97 7.53 -2.39 -0.02 1.95 16 48 H 0.06 1.88 8.14 -2.39 -0.02 1.87 16 49 H 0.05 2.49 5.10 -2.39 -0.01 2.48 16 50 H 0.25 13.32 8.32 -92.70 -0.77 12.55 16 Total: -1.00 -64.27 369.07 2.48 -61.79 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.93 Total: 19.43 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 4.73 Total: 8.82 kcal Atomic # 7 Polarization: -96.01 SS G_CDS: -3.93 Total: -99.93 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.05 Total: -23.52 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: -7.86 SS G_CDS: -1.24 Total: -9.11 kcal Total: -64.27 2.48 -61.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898133030.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.057 kcal (2) G-P(sol) polarization free energy of solvation -64.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds