Wall clock time and date at job start Tue Mar 31 2020 22:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.60911 * 2 1 4 4 C 1.53372 * 109.60797 * 120.33460 * 2 1 3 5 5 N 1.46965 * 108.63330 * 70.32149 * 4 2 1 6 6 C 1.34781 * 120.59369 * 235.19966 * 5 4 2 7 7 O 1.21278 * 119.99668 * 6.41265 * 6 5 4 8 8 C 1.50700 * 120.00163 * 186.40277 * 6 5 4 9 9 C 1.53351 * 108.37206 * 117.86170 * 8 6 5 10 10 C 1.54741 * 108.82159 * 58.15454 * 9 8 6 11 11 H 1.09011 * 114.19001 * 195.90863 * 10 9 8 12 12 C 1.35216 * 112.99187 * 217.89869 * 7 6 5 13 13 C 1.35192 * 113.07512 * 142.33827 * 7 6 5 14 14 C 1.54965 * 131.60859 * 17.20313 * 13 7 6 15 15 H 1.08998 * 114.36779 * 215.56974 * 14 13 7 16 16 C 1.52455 * 108.79281 * 241.56588 * 8 6 5 17 17 S 1.84393 * 105.57690 * 69.40240 * 10 9 8 18 18 C 1.46963 * 118.81213 * 55.48011 * 5 4 2 19 19 C 1.53814 * 108.39728 * 304.47839 * 18 5 4 20 20 H 1.08994 * 109.74681 * 289.85231 * 19 18 5 21 21 C 1.52999 * 109.53292 * 169.30343 * 19 18 5 22 22 N 1.46962 * 109.61053 * 239.47902 * 2 1 3 23 23 C 1.36939 * 120.59314 * 115.46219 * 22 2 1 24 24 H 1.08008 * 119.99816 * 63.29999 * 23 22 2 25 25 C 1.38810 * 120.00018 * 243.30277 * 23 22 2 26 26 N 1.31625 * 119.99883 * 186.07506 * 25 23 22 27 27 Si 1.86800 * 119.99899 * 6.07394 * 25 23 22 28 28 H 1.48499 * 109.47026 * 94.99066 * 27 25 23 29 29 H 1.48505 * 109.46801 * 214.98791 * 27 25 23 30 30 H 1.48496 * 109.47173 * 334.98978 * 27 25 23 31 31 H 1.08999 * 109.47140 * 299.66798 * 1 2 3 32 32 H 1.09004 * 109.46666 * 59.66549 * 1 2 3 33 33 H 1.08999 * 109.47234 * 179.66381 * 1 2 3 34 34 H 1.09001 * 109.61336 * 310.57654 * 4 2 1 35 35 H 1.09003 * 109.61232 * 190.06196 * 4 2 1 36 36 H 1.09002 * 108.75805 * 359.92461 * 8 6 5 37 37 H 1.09003 * 109.88017 * 298.26565 * 9 8 6 38 38 H 1.09001 * 109.58221 * 177.87104 * 9 8 6 39 39 H 1.09004 * 119.28283 * 159.06014 * 12 7 6 40 40 H 1.08996 * 53.65080 * 66.25766 * 12 7 6 41 41 H 1.09002 * 119.27136 * 200.83589 * 13 7 6 42 42 H 1.08998 * 53.63860 * 293.63601 * 13 7 6 43 43 H 1.09000 * 109.50191 * 182.71148 * 16 8 6 44 44 H 1.08994 * 109.50547 * 62.58882 * 16 8 6 45 45 H 1.08998 * 109.61298 * 64.26735 * 18 5 4 46 46 H 1.09003 * 109.60775 * 184.77613 * 18 5 4 47 47 H 1.09005 * 109.47299 * 295.80283 * 21 19 18 48 48 H 1.08998 * 109.47033 * 55.79739 * 21 19 18 49 49 H 1.09002 * 109.47006 * 175.79982 * 21 19 18 50 50 H 0.96995 * 119.99525 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7297 1.2470 5 7 1.7605 -2.1643 1.1023 6 6 1.0605 -2.8236 2.0468 7 8 0.5598 -2.2129 2.9672 8 6 0.8999 -4.3194 1.9589 9 6 1.5580 -4.9495 3.1923 10 6 0.8912 -4.3722 4.4638 11 1 1.4564 -4.5409 5.3805 12 6 0.6261 -2.8798 4.1416 13 6 -0.6501 -2.6964 3.3279 14 6 -1.3451 -4.0508 3.0381 15 1 -2.4236 -3.9815 2.8960 16 6 -0.5834 -4.6474 1.8303 17 16 -0.8175 -5.0651 4.4848 18 6 2.2587 -2.8686 -0.0875 19 6 1.7391 -2.1377 -1.3372 20 1 0.6640 -2.2898 -1.4325 21 6 2.4499 -2.6793 -2.5791 22 7 2.0233 -0.7031 -1.1926 23 6 2.7346 -0.0333 -2.1521 24 1 3.6910 0.4051 -1.9078 25 6 2.2264 0.0823 -3.4386 26 7 2.9599 0.6200 -4.3901 27 14 0.5015 -0.5252 -3.8196 28 1 -0.4549 0.6064 -3.7209 29 1 0.4663 -1.0847 -5.1948 30 1 0.1221 -1.5804 -2.8460 31 1 -0.3633 0.5087 0.8929 32 1 -0.3633 0.5191 -0.8870 33 1 -0.3633 -1.0276 -0.0060 34 1 1.5384 -0.3439 2.1318 35 1 3.1199 -0.5776 1.3422 36 1 1.4168 -4.6757 1.0678 37 1 2.6232 -4.7181 3.2030 38 1 1.4202 -6.0305 3.1679 39 1 0.5350 -2.3252 5.0755 40 1 1.4688 -2.4830 3.5756 41 1 -1.3362 -2.0561 3.8823 42 1 -0.4026 -2.2142 2.3823 43 1 -0.7169 -5.7290 1.8143 44 1 -0.9723 -4.2184 0.9069 45 1 3.3486 -2.8652 -0.0851 46 1 1.8935 -3.8956 -0.0843 47 1 3.5138 -2.4499 -2.5179 48 1 2.3137 -3.7594 -2.6336 49 1 2.0286 -2.2145 -3.4705 50 1 2.6049 0.7004 -5.2892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898133032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:35 Heat of formation + Delta-G solvation = 494.525343 kcal Electronic energy + Delta-G solvation = -31135.712475 eV Core-core repulsion = 27504.258794 eV Total energy + Delta-G solvation = -3631.453681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -49.01048 -38.53593 -36.85189 -35.00762 -32.86022 -32.72849 -31.98508 -30.90136 -28.22953 -27.11314 -26.79173 -26.01997 -25.24271 -23.67994 -23.22969 -22.36386 -21.06356 -19.14163 -18.69320 -18.32870 -17.14852 -16.89827 -16.70280 -15.95599 -15.15089 -14.81366 -14.53406 -14.17963 -14.08407 -13.85013 -13.72799 -13.40579 -13.23161 -13.10382 -12.91989 -12.64353 -12.57766 -12.21811 -12.12871 -11.71654 -11.47971 -11.39974 -10.95269 -10.91824 -10.75921 -10.65358 -10.58193 -10.46993 -10.33813 -10.03820 -9.95173 -9.75899 -9.53098 -9.31933 -8.87494 -8.45882 -7.77837 -7.29697 -6.34579 -5.97559 -5.14648 -3.76821 1.78003 1.82838 2.82486 3.33144 3.44293 3.49491 3.65755 4.08126 4.14118 4.50172 4.56599 4.67637 4.73066 4.75948 4.80866 4.95904 4.99097 5.12599 5.26222 5.41037 5.42931 5.54783 5.56415 5.71818 5.73373 5.75948 5.80042 5.86737 5.98700 6.00213 6.07133 6.10323 6.11497 6.14853 6.22108 6.25646 6.31269 6.42118 6.47227 6.58699 6.66821 6.80020 6.89558 7.06615 7.12928 7.32482 8.14521 8.32823 8.60543 8.63670 9.07922 9.65985 10.27143 11.11850 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.004007 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.680069 B = 6985.495024 C = 7074.020536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.072 0.928 4 C 0.121 3.879 5 N -0.602 5.602 6 C -0.110 4.110 7 O -0.118 6.118 8 C -0.030 4.030 9 C -0.107 4.107 10 C -0.033 4.033 11 H 0.122 0.878 12 C -0.083 4.083 13 C -0.107 4.107 14 C -0.028 4.028 15 H 0.123 0.877 16 C -0.110 4.110 17 S -0.316 6.316 18 C 0.123 3.877 19 C 0.146 3.854 20 H 0.038 0.962 21 C -0.133 4.133 22 N -0.592 5.592 23 C -0.274 4.274 24 H 0.065 0.935 25 C 0.057 3.943 26 N -0.904 5.904 27 Si 0.875 3.125 28 H -0.296 1.296 29 H -0.300 1.300 30 H -0.245 1.245 31 H 0.036 0.964 32 H 0.047 0.953 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.198 0.802 41 H 0.045 0.955 42 H 0.210 0.790 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.067 0.933 48 H 0.035 0.965 49 H 0.053 0.947 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -10.362 16.188 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.090 0.910 4 C -0.004 4.004 5 N -0.339 5.339 6 C -0.267 4.267 7 O -0.016 6.016 8 C -0.049 4.049 9 C -0.146 4.146 10 C -0.162 4.162 11 H 0.140 0.860 12 C -0.118 4.118 13 C -0.142 4.142 14 C -0.156 4.156 15 H 0.141 0.859 16 C -0.149 4.149 17 S -0.086 6.086 18 C -0.002 4.002 19 C 0.040 3.960 20 H 0.055 0.945 21 C -0.190 4.190 22 N -0.317 5.317 23 C -0.403 4.403 24 H 0.082 0.918 25 C -0.146 4.146 26 N -0.543 5.543 27 Si 0.705 3.295 28 H -0.224 1.224 29 H -0.228 1.228 30 H -0.170 1.170 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.199 0.801 41 H 0.063 0.937 42 H 0.211 0.789 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.054 0.946 49 H 0.071 0.929 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.469 -11.022 17.055 21.312 hybrid contribution -0.350 1.081 -1.349 1.763 sum -6.819 -9.941 15.707 19.800 Atomic orbital electron populations 1.22182 0.99057 1.00677 0.99708 1.21092 0.91374 0.95648 0.87423 0.90950 1.21743 0.98912 0.81981 0.97810 1.45445 1.60142 1.07157 1.21173 1.17719 1.19894 0.92222 0.96851 1.92272 1.15766 1.75257 1.18333 1.19844 0.95189 0.90797 0.99118 1.22084 0.99635 1.00192 0.92709 1.24800 0.93935 0.96102 1.01380 0.85961 1.21869 1.04237 0.95158 0.90535 1.21962 0.88343 0.98613 1.05268 1.24705 1.01978 0.94511 0.94454 0.85879 1.21945 0.94954 1.01163 0.96869 1.87967 1.16051 1.59482 1.45143 1.22051 0.97561 0.94675 0.85913 1.21364 0.96462 0.85721 0.92456 0.94479 1.21820 1.02274 0.97037 0.97893 1.44164 1.63446 1.02703 1.21415 1.18486 1.00688 1.32056 0.89102 0.91788 1.26102 0.96880 0.94729 0.96870 1.69805 1.37233 1.45352 1.01918 0.87136 0.85698 0.79543 0.77098 1.22362 1.22785 1.17019 0.94521 0.93373 0.93340 0.92822 0.93468 0.88687 0.90646 0.90712 0.93945 0.80063 0.93742 0.78878 0.90560 0.90634 0.93534 0.91773 0.91382 0.94620 0.92860 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.14 37.16 0.34 -2.47 16 2 C 0.15 2.92 3.31 -67.48 -0.22 2.70 16 3 H 0.07 1.47 7.94 -51.93 -0.41 1.05 16 4 C 0.12 1.95 5.97 -3.60 -0.02 1.93 16 5 N -0.60 -9.05 2.60 -233.39 -0.61 -9.66 16 6 C -0.11 -1.36 4.08 -10.98 -0.04 -1.40 16 7 O -0.12 -1.34 3.41 41.41 0.14 -1.20 16 8 C -0.03 -0.33 2.64 -91.87 -0.24 -0.57 16 9 C -0.11 -1.04 5.32 -25.63 -0.14 -1.17 16 10 C -0.03 -0.32 4.83 -24.78 -0.12 -0.44 16 11 H 0.12 1.03 8.14 -51.92 -0.42 0.60 16 12 C -0.08 -0.83 4.29 -25.98 -0.11 -0.94 16 13 C -0.11 -1.12 4.29 -25.97 -0.11 -1.23 16 14 C -0.03 -0.28 4.87 -24.77 -0.12 -0.41 16 15 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.11 -1.15 5.25 -26.09 -0.14 -1.28 16 17 S -0.32 -3.51 22.01 -107.50 -2.37 -5.88 16 18 C 0.12 2.02 5.79 -3.37 -0.02 2.00 16 19 C 0.15 2.90 1.98 -67.25 -0.13 2.77 16 20 H 0.04 0.79 5.53 -51.93 -0.29 0.50 16 21 C -0.13 -2.70 7.78 37.16 0.29 -2.41 16 22 N -0.59 -13.11 1.80 -156.76 -0.28 -13.40 16 23 C -0.27 -7.29 8.51 -15.06 -0.13 -7.42 16 24 H 0.06 1.91 8.06 -52.48 -0.42 1.49 16 25 C 0.06 1.57 4.59 -17.43 -0.08 1.49 16 26 N -0.90 -26.86 13.97 55.49 0.78 -26.08 16 27 Si 0.88 21.64 24.66 -169.99 -4.19 17.45 16 28 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 29 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 30 H -0.25 -5.66 4.26 56.52 0.24 -5.42 16 31 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.96 7.81 -51.93 -0.41 0.55 16 33 H 0.05 0.87 7.00 -51.93 -0.36 0.51 16 34 H 0.05 0.77 6.97 -51.93 -0.36 0.41 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.10 1.12 5.11 -51.93 -0.27 0.85 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.20 2.20 4.02 35.78 0.14 2.34 16 41 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.21 2.53 4.03 36.15 0.15 2.68 16 43 H 0.08 0.77 8.03 -51.93 -0.42 0.35 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.05 0.82 8.12 -51.93 -0.42 0.39 16 46 H 0.06 0.92 5.15 -51.93 -0.27 0.66 16 47 H 0.07 1.47 7.70 -51.93 -0.40 1.07 16 48 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.05 1.21 3.52 -51.93 -0.18 1.03 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 348.22 15.07 5.25 5.25 Total: -1.00 -28.32 348.22 -9.72 -38.04 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.44 Total: 4.34 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -1.00 Total: -8.87 kcal Atomic # 7 Polarization: -49.02 SS G_CDS: -0.11 Total: -49.13 kcal Atomic # 8 Polarization: -1.34 SS G_CDS: 0.14 Total: -1.20 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.19 Total: 17.45 kcal Atomic # 16 Polarization: -3.51 SS G_CDS: -2.37 Total: -5.88 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -28.32 -9.72 -38.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898133032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 532.567 kcal (2) G-P(sol) polarization free energy of solvation -28.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 504.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) 494.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds