Wall clock time and date at job start Tue Mar 31 2020 22:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.60911 * 2 1 4 4 C 1.53372 * 109.60797 * 120.33460 * 2 1 3 5 5 N 1.46965 * 108.63330 * 70.32149 * 4 2 1 6 6 C 1.34781 * 120.59369 * 235.19966 * 5 4 2 7 7 O 1.21278 * 119.99668 * 6.41265 * 6 5 4 8 8 C 1.50700 * 120.00163 * 186.40277 * 6 5 4 9 9 C 1.53351 * 108.37206 * 117.86170 * 8 6 5 10 10 C 1.54741 * 108.82159 * 58.15454 * 9 8 6 11 11 H 1.09011 * 114.19001 * 195.90863 * 10 9 8 12 12 C 1.35216 * 112.99187 * 217.89869 * 7 6 5 13 13 C 1.35192 * 113.07512 * 142.33827 * 7 6 5 14 14 C 1.54965 * 131.60859 * 17.20313 * 13 7 6 15 15 H 1.08998 * 114.36779 * 215.56974 * 14 13 7 16 16 C 1.52455 * 108.79281 * 241.56588 * 8 6 5 17 17 S 1.84393 * 105.57690 * 69.40240 * 10 9 8 18 18 C 1.46963 * 118.81213 * 55.48011 * 5 4 2 19 19 C 1.53814 * 108.39728 * 304.47839 * 18 5 4 20 20 H 1.08994 * 109.74681 * 289.85231 * 19 18 5 21 21 C 1.52999 * 109.53292 * 169.30343 * 19 18 5 22 22 N 1.46962 * 109.61053 * 239.47902 * 2 1 3 23 23 C 1.36939 * 120.59314 * 115.46219 * 22 2 1 24 24 H 1.08008 * 119.99816 * 63.29999 * 23 22 2 25 25 C 1.38810 * 120.00018 * 243.30277 * 23 22 2 26 26 N 1.31625 * 119.99883 * 186.07506 * 25 23 22 27 27 Si 1.86800 * 119.99899 * 6.07394 * 25 23 22 28 28 H 1.48499 * 109.47026 * 94.99066 * 27 25 23 29 29 H 1.48505 * 109.46801 * 214.98791 * 27 25 23 30 30 H 1.48496 * 109.47173 * 334.98978 * 27 25 23 31 31 H 1.08999 * 109.47140 * 299.66798 * 1 2 3 32 32 H 1.09004 * 109.46666 * 59.66549 * 1 2 3 33 33 H 1.08999 * 109.47234 * 179.66381 * 1 2 3 34 34 H 1.09001 * 109.61336 * 310.57654 * 4 2 1 35 35 H 1.09003 * 109.61232 * 190.06196 * 4 2 1 36 36 H 1.09002 * 108.75805 * 359.92461 * 8 6 5 37 37 H 1.09003 * 109.88017 * 298.26565 * 9 8 6 38 38 H 1.09001 * 109.58221 * 177.87104 * 9 8 6 39 39 H 1.09004 * 119.28283 * 159.06014 * 12 7 6 40 40 H 1.08996 * 53.65080 * 66.25766 * 12 7 6 41 41 H 1.09002 * 119.27136 * 200.83589 * 13 7 6 42 42 H 1.08998 * 53.63860 * 293.63601 * 13 7 6 43 43 H 1.09000 * 109.50191 * 182.71148 * 16 8 6 44 44 H 1.08994 * 109.50547 * 62.58882 * 16 8 6 45 45 H 1.08998 * 109.61298 * 64.26735 * 18 5 4 46 46 H 1.09003 * 109.60775 * 184.77613 * 18 5 4 47 47 H 1.09005 * 109.47299 * 295.80283 * 21 19 18 48 48 H 1.08998 * 109.47033 * 55.79739 * 21 19 18 49 49 H 1.09002 * 109.47006 * 175.79982 * 21 19 18 50 50 H 0.96995 * 119.99525 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7297 1.2470 5 7 1.7605 -2.1643 1.1023 6 6 1.0605 -2.8236 2.0468 7 8 0.5598 -2.2129 2.9672 8 6 0.8999 -4.3194 1.9589 9 6 1.5580 -4.9495 3.1923 10 6 0.8912 -4.3722 4.4638 11 1 1.4564 -4.5409 5.3805 12 6 0.6261 -2.8798 4.1416 13 6 -0.6501 -2.6964 3.3279 14 6 -1.3451 -4.0508 3.0381 15 1 -2.4236 -3.9815 2.8960 16 6 -0.5834 -4.6474 1.8303 17 16 -0.8175 -5.0651 4.4848 18 6 2.2587 -2.8686 -0.0875 19 6 1.7391 -2.1377 -1.3372 20 1 0.6640 -2.2898 -1.4325 21 6 2.4499 -2.6793 -2.5791 22 7 2.0233 -0.7031 -1.1926 23 6 2.7346 -0.0333 -2.1521 24 1 3.6910 0.4051 -1.9078 25 6 2.2264 0.0823 -3.4386 26 7 2.9599 0.6200 -4.3901 27 14 0.5015 -0.5252 -3.8196 28 1 -0.4549 0.6064 -3.7209 29 1 0.4663 -1.0847 -5.1948 30 1 0.1221 -1.5804 -2.8460 31 1 -0.3633 0.5087 0.8929 32 1 -0.3633 0.5191 -0.8870 33 1 -0.3633 -1.0276 -0.0060 34 1 1.5384 -0.3439 2.1318 35 1 3.1199 -0.5776 1.3422 36 1 1.4168 -4.6757 1.0678 37 1 2.6232 -4.7181 3.2030 38 1 1.4202 -6.0305 3.1679 39 1 0.5350 -2.3252 5.0755 40 1 1.4688 -2.4830 3.5756 41 1 -1.3362 -2.0561 3.8823 42 1 -0.4026 -2.2142 2.3823 43 1 -0.7169 -5.7290 1.8143 44 1 -0.9723 -4.2184 0.9069 45 1 3.3486 -2.8652 -0.0851 46 1 1.8935 -3.8956 -0.0843 47 1 3.5138 -2.4499 -2.5179 48 1 2.3137 -3.7594 -2.6336 49 1 2.0286 -2.2145 -3.4705 50 1 2.6049 0.7004 -5.2892 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898133032.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:34 Heat of formation + Delta-G solvation = 479.183025 kcal Electronic energy + Delta-G solvation = -31136.377768 eV Core-core repulsion = 27504.258794 eV Total energy + Delta-G solvation = -3632.118974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 338.177 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -49.92468 -39.96945 -37.68423 -36.39381 -34.37913 -33.78098 -33.54176 -32.13256 -29.89474 -28.30050 -27.66078 -27.19227 -26.53469 -25.15841 -24.02460 -23.66350 -22.58758 -20.43219 -20.04232 -19.23399 -18.56941 -17.95386 -17.54458 -17.33692 -16.87989 -16.18993 -15.65185 -15.45569 -15.33109 -15.28166 -14.72980 -14.69112 -14.50872 -14.20433 -14.02793 -13.85683 -13.69398 -13.52961 -13.38137 -13.26663 -12.97061 -12.73813 -12.47758 -12.43154 -12.25446 -11.89490 -11.76392 -11.63190 -11.56909 -11.55427 -11.35305 -11.20422 -10.92257 -10.65090 -10.36812 -9.99892 -8.63600 -8.28453 -8.20229 -7.99829 -6.16461 -5.89478 0.94250 1.01432 1.33014 1.39588 1.51038 1.99745 2.43090 2.66641 3.14508 3.17404 3.20921 3.40446 3.69008 3.81852 3.88190 3.97602 4.01613 4.19663 4.24396 4.30917 4.38061 4.50281 4.56231 4.57310 4.60481 4.64511 4.66999 4.74325 4.75429 4.77363 4.87391 4.92562 4.97961 5.01545 5.07766 5.13979 5.14273 5.21537 5.25866 5.32964 5.33725 5.38967 5.41965 5.50800 5.64614 6.01988 6.04547 6.37696 7.22720 7.28559 7.63521 7.64332 8.26785 8.99976 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023750 B = 0.004007 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.680069 B = 6985.495024 C = 7074.020536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.143 3.857 3 H 0.050 0.950 4 C 0.137 3.863 5 N -0.608 5.608 6 C -0.157 4.157 7 O -0.093 6.093 8 C -0.021 4.021 9 C -0.103 4.103 10 C -0.022 4.022 11 H 0.140 0.860 12 C -0.075 4.075 13 C -0.101 4.101 14 C -0.020 4.020 15 H 0.136 0.864 16 C -0.107 4.107 17 S -0.336 6.336 18 C 0.139 3.861 19 C 0.144 3.856 20 H 0.036 0.964 21 C -0.131 4.131 22 N -0.603 5.603 23 C -0.255 4.255 24 H 0.017 0.983 25 C 0.011 3.989 26 N -0.953 5.953 27 Si 0.931 3.069 28 H -0.307 1.307 29 H -0.306 1.306 30 H -0.218 1.218 31 H 0.066 0.934 32 H 0.022 0.978 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.027 0.973 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.059 0.941 40 H 0.198 0.802 41 H 0.057 0.943 42 H 0.205 0.795 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.091 0.909 47 H 0.043 0.957 48 H 0.074 0.926 49 H 0.026 0.974 50 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 -12.479 19.386 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.036 3.964 3 H 0.068 0.932 4 C 0.011 3.989 5 N -0.346 5.346 6 C -0.310 4.310 7 O 0.008 5.992 8 C -0.040 4.040 9 C -0.142 4.142 10 C -0.151 4.151 11 H 0.158 0.842 12 C -0.110 4.110 13 C -0.136 4.136 14 C -0.148 4.148 15 H 0.153 0.847 16 C -0.146 4.146 17 S -0.107 6.107 18 C 0.013 3.987 19 C 0.039 3.961 20 H 0.053 0.947 21 C -0.189 4.189 22 N -0.329 5.329 23 C -0.385 4.385 24 H 0.035 0.965 25 C -0.187 4.187 26 N -0.596 5.596 27 Si 0.760 3.240 28 H -0.235 1.235 29 H -0.234 1.234 30 H -0.141 1.141 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.199 0.801 41 H 0.075 0.925 42 H 0.205 0.795 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.046 0.954 46 H 0.109 0.891 47 H 0.062 0.938 48 H 0.093 0.907 49 H 0.045 0.955 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.741 -13.180 20.311 25.742 hybrid contribution 0.327 1.742 -2.077 2.730 sum -8.413 -11.439 18.234 23.111 Atomic orbital electron populations 1.22015 0.97366 1.00898 0.99948 1.21234 0.92601 0.94850 0.87694 0.93181 1.21398 0.97830 0.83005 0.96684 1.45217 1.61644 1.06250 1.21448 1.17591 1.23132 0.92557 0.97707 1.92324 1.14033 1.75397 1.17460 1.19726 0.95287 0.89864 0.99134 1.22050 0.99650 1.00280 0.92215 1.24793 0.93136 0.94958 1.02189 0.84227 1.21756 1.02182 0.95973 0.91128 1.21875 0.89095 0.99038 1.03558 1.24672 1.02648 0.93648 0.93857 0.84656 1.21914 0.94704 1.01333 0.96649 1.88164 1.16959 1.60187 1.45372 1.21733 0.96417 0.95630 0.84881 1.21466 0.96142 0.84395 0.94133 0.94702 1.21798 1.00516 0.99463 0.97103 1.44266 1.63305 1.03994 1.21365 1.18203 0.99175 1.31029 0.90135 0.96546 1.26652 1.00042 0.95315 0.96658 1.69939 1.39132 1.48138 1.02358 0.86252 0.81313 0.79319 0.77088 1.23536 1.23447 1.14112 0.91482 0.95891 0.92926 0.90445 0.95441 0.89627 0.90426 0.90379 0.92371 0.80118 0.92499 0.79513 0.90213 0.91144 0.95396 0.89120 0.93784 0.90709 0.95490 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.87 9.14 71.98 0.66 -4.21 16 2 C 0.14 5.47 3.31 45.03 0.15 5.62 16 3 H 0.05 2.09 7.94 -2.39 -0.02 2.07 16 4 C 0.14 4.24 5.97 86.42 0.52 4.76 16 5 N -0.61 -17.05 2.60 ******* -2.63 -19.68 16 6 C -0.16 -3.37 4.08 87.66 0.36 -3.01 16 7 O -0.09 -1.73 3.41 125.24 0.43 -1.30 16 8 C -0.02 -0.38 2.64 -11.60 -0.03 -0.42 16 9 C -0.10 -1.63 5.32 31.31 0.17 -1.46 16 10 C -0.02 -0.33 4.83 31.86 0.15 -0.18 16 11 H 0.14 1.69 8.14 -2.38 -0.02 1.67 16 12 C -0.08 -1.17 4.29 31.08 0.13 -1.04 16 13 C -0.10 -1.66 4.29 31.09 0.13 -1.52 16 14 C -0.02 -0.32 4.87 31.86 0.16 -0.17 16 15 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 16 C -0.11 -1.84 5.25 31.01 0.16 -1.68 16 17 S -0.34 -6.16 22.01 -56.49 -1.24 -7.41 16 18 C 0.14 4.36 5.79 86.57 0.50 4.86 16 19 C 0.14 5.60 1.98 45.18 0.09 5.69 16 20 H 0.04 1.41 5.53 -2.39 -0.01 1.39 16 21 C -0.13 -5.32 7.78 71.98 0.56 -4.76 16 22 N -0.60 -27.15 1.80 -649.88 -1.17 -28.32 16 23 C -0.25 -14.23 8.51 84.03 0.72 -13.51 16 24 H 0.02 1.08 8.06 -2.91 -0.02 1.06 16 25 C 0.01 0.64 4.59 84.86 0.39 1.03 16 26 N -0.95 -59.52 13.97 21.65 0.30 -59.21 16 27 Si 0.93 45.85 24.66 68.60 1.69 47.55 16 28 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 29 H -0.31 -15.28 7.11 99.48 0.71 -14.58 16 30 H -0.22 -9.61 4.26 99.48 0.42 -9.19 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.02 0.87 7.81 -2.38 -0.02 0.85 16 33 H 0.05 1.74 7.00 -2.39 -0.02 1.73 16 34 H 0.08 2.01 6.97 -2.39 -0.02 1.99 16 35 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.09 1.75 5.11 -2.39 -0.01 1.74 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.08 1.21 8.06 -2.39 -0.02 1.19 16 39 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 40 H 0.20 3.57 4.02 28.54 0.11 3.69 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.20 4.04 4.03 28.86 0.12 4.16 16 43 H 0.08 1.33 8.03 -2.39 -0.02 1.31 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.03 0.97 8.12 -2.39 -0.02 0.95 16 46 H 0.09 2.38 5.15 -2.39 -0.01 2.36 16 47 H 0.04 1.96 7.70 -2.38 -0.02 1.94 16 48 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.03 1.22 3.52 -2.39 -0.01 1.21 16 50 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -64.70 348.22 3.10 -61.61 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.91 Total: 16.77 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 4.81 Total: -10.01 kcal Atomic # 7 Polarization: -103.71 SS G_CDS: -3.49 Total: -107.21 kcal Atomic # 8 Polarization: -1.73 SS G_CDS: 0.43 Total: -1.30 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.69 Total: 47.55 kcal Atomic # 16 Polarization: -6.16 SS G_CDS: -1.24 Total: -7.41 kcal Total: -64.70 3.10 -61.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898133032.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 540.789 kcal (2) G-P(sol) polarization free energy of solvation -64.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 476.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 479.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds