Wall clock time and date at job start Tue Mar 31 2020 22:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 H 1.09003 * 110.71847 * 23.25059 * 4 2 1 6 6 N 1.46501 * 110.72340 * 259.97553 * 4 2 1 7 7 C 1.36940 * 120.00109 * 154.99771 * 6 4 2 8 8 H 1.08001 * 119.99911 * 0.02562 * 7 6 4 9 9 C 1.38808 * 119.99748 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00176 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47033 * 90.00309 * 11 9 7 13 13 H 1.48498 * 109.47181 * 210.00334 * 11 9 7 14 14 H 1.48501 * 109.47134 * 330.00288 * 11 9 7 15 15 C 1.55158 * 102.94590 * 141.60808 * 4 2 1 16 16 C 1.54914 * 101.58192 * 324.50345 * 15 4 2 17 17 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 18 18 C 1.34777 * 125.64703 * 61.58893 * 17 2 1 19 19 O 1.21285 * 119.99926 * 0.02562 * 18 17 2 20 20 C 1.50697 * 119.99771 * 180.02562 * 18 17 2 21 21 C 1.50697 * 109.46945 * 180.02562 * 20 18 17 22 22 C 1.36137 * 120.17204 * 265.00335 * 21 20 18 23 23 C 1.39330 * 120.98375 * 180.02562 * 22 21 20 24 24 C 1.36123 * 120.99742 * 359.97438 * 23 22 21 25 25 C 1.40500 * 119.64963 * 0.02562 * 24 23 22 26 26 C 1.40546 * 121.29233 * 179.97438 * 25 24 23 27 27 C 1.36089 * 119.65787 * 180.02562 * 26 25 24 28 28 C 1.39380 * 120.99159 * 0.02562 * 27 26 25 29 29 C 1.36092 * 120.99223 * 0.02562 * 28 27 26 30 30 C 1.40506 * 120.17820 * 84.72665 * 21 20 18 31 31 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 32 32 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 33 33 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 34 34 H 0.96997 * 119.99273 * 334.99826 * 6 4 2 35 35 H 0.97000 * 120.00003 * 180.02562 * 10 9 7 36 36 H 1.09003 * 111.00366 * 82.57268 * 15 4 2 37 37 H 1.08995 * 111.00914 * 206.38778 * 15 4 2 38 38 H 1.08999 * 110.36787 * 155.84172 * 16 15 4 39 39 H 1.08999 * 110.36029 * 278.05870 * 16 15 4 40 40 H 1.09001 * 109.47682 * 300.00397 * 20 18 17 41 41 H 1.09003 * 109.46941 * 60.00441 * 20 18 17 42 42 H 1.07998 * 119.50769 * 359.97406 * 22 21 20 43 43 H 1.08007 * 119.49747 * 179.97438 * 23 22 21 44 44 H 1.07999 * 120.17723 * 179.97438 * 24 23 22 45 45 H 1.08006 * 120.17389 * 359.97438 * 26 25 24 46 46 H 1.08005 * 119.50441 * 179.97438 * 27 26 25 47 47 H 1.07994 * 119.50018 * 179.97438 * 28 27 26 48 48 H 1.07995 * 120.17050 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 1 1.3052 -1.4437 1.6201 6 7 2.4555 0.1992 2.2872 7 6 2.4583 -0.1896 3.6003 8 1 2.1655 -1.1945 3.8665 9 6 2.8384 0.7075 4.5889 10 7 3.1957 1.9320 4.2644 11 14 2.8415 0.1774 6.3801 12 1 4.1710 -0.3856 6.7274 13 1 2.5601 1.3517 7.2444 14 1 1.7958 -0.8554 6.5925 15 6 3.2876 -1.5133 0.6944 16 6 2.8145 -1.8804 -0.7343 17 7 2.0301 -0.7157 -1.1830 18 6 1.8072 -0.3655 -2.4653 19 8 1.1431 0.6172 -2.7189 20 6 2.3831 -1.1950 -3.5838 21 6 1.9908 -0.5934 -4.9086 22 6 0.8935 -1.0526 -5.5706 23 6 0.5157 -0.5091 -6.7966 24 6 1.2325 0.4972 -7.3680 25 6 2.3713 0.9973 -6.7145 26 6 3.1368 2.0351 -7.2733 27 6 4.2341 2.4938 -6.6118 28 6 4.6127 1.9494 -5.3858 29 6 3.8964 0.9430 -4.8148 30 6 2.7524 0.4484 -5.4645 31 1 -0.3633 0.4979 0.8990 32 1 -0.3633 -1.0275 -0.0183 33 1 -0.3634 0.5296 -0.8807 34 1 2.7188 1.1016 2.0480 35 1 3.4616 2.5588 4.9552 36 1 4.1655 -0.8679 0.6615 37 1 3.4857 -2.4089 1.2832 38 1 3.6716 -2.0356 -1.3896 39 1 2.1903 -2.7735 -0.7093 40 1 3.4698 -1.2127 -3.5008 41 1 1.9971 -2.2122 -3.5178 42 1 0.3075 -1.8508 -5.1393 43 1 -0.3591 -0.8921 -7.3012 44 1 0.9279 0.9085 -8.3190 45 1 2.8563 2.4658 -8.2232 46 1 4.8209 3.2911 -7.0437 47 1 5.4881 2.3315 -4.8819 48 1 4.2020 0.5307 -3.8646 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987394896.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:11:03 Heat of formation + Delta-G solvation = 21.647715 kcal Electronic energy + Delta-G solvation = -28764.662449 eV Core-core repulsion = 24977.259304 eV Total energy + Delta-G solvation = -3787.403145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.79097 -39.74126 -37.51289 -36.54636 -34.14201 -33.87266 -31.73666 -30.93069 -30.40956 -30.24873 -29.16596 -27.35848 -25.21892 -23.53689 -23.08858 -23.07835 -22.62241 -21.08113 -20.03806 -18.72357 -17.65484 -17.32350 -17.10126 -16.79454 -16.35574 -15.91517 -15.15916 -14.81050 -14.51458 -14.28619 -14.03118 -13.74925 -13.58167 -13.45177 -13.39957 -13.38339 -12.94446 -12.83108 -12.60594 -12.23677 -12.05333 -11.98583 -11.77836 -11.60131 -11.41674 -11.16902 -11.05692 -11.02885 -10.88553 -10.84654 -10.59909 -10.26082 -10.06153 -10.00049 -9.78297 -9.50194 -8.96588 -8.68820 -8.38649 -7.94576 -7.05570 -5.83553 -3.14144 0.41625 0.94151 1.93150 2.80658 2.86493 3.21655 3.39483 3.44987 3.46739 4.02357 4.35062 4.53014 4.61426 4.67817 4.72467 4.78881 4.89235 5.00538 5.01869 5.08246 5.23013 5.26769 5.29067 5.33061 5.38542 5.39640 5.47661 5.56939 5.63271 5.68332 5.79184 5.85483 5.94045 6.00235 6.08796 6.10515 6.11913 6.13829 6.28365 6.32535 6.42888 6.45295 6.53641 6.57367 6.61364 6.71016 6.75705 6.90000 6.91249 7.63471 7.77705 8.33295 8.37961 9.45177 9.99653 10.34294 11.38565 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.019542 B = 0.002457 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.433435 B =11394.033773 C =12050.396287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.126 3.874 3 H 0.076 0.924 4 C 0.177 3.823 5 H 0.067 0.933 6 N -0.714 5.714 7 C -0.244 4.244 8 H 0.072 0.928 9 C -0.010 4.010 10 N -0.930 5.930 11 Si 0.908 3.092 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.157 4.157 16 C 0.097 3.903 17 N -0.610 5.610 18 C 0.527 3.473 19 O -0.531 6.531 20 C -0.102 4.102 21 C -0.046 4.046 22 C -0.107 4.107 23 C -0.112 4.112 24 C -0.110 4.110 25 C -0.051 4.051 26 C -0.109 4.109 27 C -0.117 4.117 28 C -0.117 4.117 29 C -0.100 4.100 30 C -0.033 4.033 31 H 0.069 0.931 32 H 0.049 0.951 33 H 0.060 0.940 34 H 0.386 0.614 35 H 0.257 0.743 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.121 0.879 47 H 0.122 0.878 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -7.196 -23.964 25.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.023 3.977 3 H 0.094 0.906 4 C 0.065 3.935 5 H 0.085 0.915 6 N -0.354 5.354 7 C -0.375 4.375 8 H 0.090 0.910 9 C -0.206 4.206 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.198 4.198 16 C -0.026 4.026 17 N -0.345 5.345 18 C 0.315 3.685 19 O -0.408 6.408 20 C -0.142 4.142 21 C -0.047 4.047 22 C -0.125 4.125 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.051 4.051 26 C -0.127 4.127 27 C -0.135 4.135 28 C -0.135 4.135 29 C -0.118 4.118 30 C -0.033 4.033 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.220 0.780 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.139 0.861 47 H 0.140 0.860 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.537 -6.692 -23.971 24.893 hybrid contribution 0.205 0.027 1.036 1.056 sum -0.332 -6.665 -22.935 23.887 Atomic orbital electron populations 1.22034 0.94993 1.01465 1.02673 1.21944 0.94400 0.96897 0.84505 0.90593 1.21237 0.93505 0.91571 0.87205 0.91505 1.42352 1.79256 1.11865 1.01929 1.19208 1.38489 0.96920 0.82907 0.90992 1.24769 1.01904 0.95854 0.98118 1.69665 1.51032 1.04607 1.32403 0.86182 0.77676 0.77280 0.84967 1.21659 1.21738 1.20688 1.23576 1.01433 1.01744 0.93033 1.22389 0.94567 0.88401 0.97250 1.48598 1.52310 1.28662 1.04936 1.20006 0.80995 0.85455 0.82091 1.90722 1.39628 1.27357 1.83054 1.20693 1.02924 0.99987 0.90590 1.19131 0.95597 0.95516 0.94419 1.20673 0.96000 1.00562 0.95290 1.20774 0.99710 0.96918 0.95629 1.20976 0.94799 0.97222 0.99834 1.18041 0.96014 0.96794 0.94265 1.20989 0.95415 0.96391 0.99920 1.20843 0.97254 0.99975 0.95419 1.20860 1.00172 0.96736 0.95776 1.21051 0.94326 0.97161 0.99291 1.17848 0.95479 0.95910 0.94109 0.91209 0.93202 0.92061 0.77982 0.93352 0.90689 0.90557 0.91401 0.91674 0.87996 0.87925 0.86092 0.85992 0.85746 0.85735 0.86079 0.85953 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.09 37.16 0.34 -2.27 16 2 C 0.13 2.23 3.21 -66.95 -0.22 2.02 16 3 H 0.08 1.54 7.71 -51.93 -0.40 1.14 16 4 C 0.18 3.32 3.14 -66.10 -0.21 3.12 16 5 H 0.07 1.26 7.80 -51.93 -0.41 0.86 16 6 N -0.71 -17.17 5.22 -51.65 -0.27 -17.44 16 7 C -0.24 -6.49 9.96 -15.06 -0.15 -6.64 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 10 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 11 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C -0.16 -2.46 6.77 -24.58 -0.17 -2.62 16 16 C 0.10 1.20 6.69 -2.53 -0.02 1.18 16 17 N -0.61 -9.14 3.07 -163.01 -0.50 -9.64 16 18 C 0.53 7.97 7.64 -10.99 -0.08 7.89 16 19 O -0.53 -10.12 15.08 5.55 0.08 -10.03 16 20 C -0.10 -1.14 4.24 -29.04 -0.12 -1.26 16 21 C -0.05 -0.57 4.38 -104.52 -0.46 -1.03 16 22 C -0.11 -1.19 9.57 -39.93 -0.38 -1.57 16 23 C -0.11 -1.13 9.95 -39.94 -0.40 -1.53 16 24 C -0.11 -1.14 9.77 -39.49 -0.39 -1.53 16 25 C -0.05 -0.62 5.74 -106.84 -0.61 -1.23 16 26 C -0.11 -1.13 9.77 -39.48 -0.39 -1.51 16 27 C -0.12 -1.18 9.95 -39.93 -0.40 -1.57 16 28 C -0.12 -1.30 9.95 -39.93 -0.40 -1.70 16 29 C -0.10 -1.25 9.28 -39.48 -0.37 -1.62 16 30 C -0.03 -0.44 5.74 -106.83 -0.61 -1.05 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.09 6.90 -51.93 -0.36 0.73 16 34 H 0.39 10.07 7.56 -40.82 -0.31 9.76 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 0.67 7.48 -51.93 -0.39 0.28 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.97 6.40 -51.93 -0.33 0.63 16 41 H 0.10 0.89 8.04 -51.93 -0.42 0.47 16 42 H 0.12 1.12 8.05 -52.49 -0.42 0.69 16 43 H 0.12 0.91 8.06 -52.48 -0.42 0.48 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 46 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 47 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 48 H 0.12 1.45 6.48 -52.49 -0.34 1.11 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -32.68 391.21 -11.35 -44.03 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -7.15 Total: 10.50 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -5.12 Total: -13.30 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.04 Total: -53.88 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.68 -11.35 -44.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987394896.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.681 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds